Wall clock time and date at job start Fri Apr 10 2020 14:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.45847 * 2 1 4 4 C 1.53035 * 109.46479 * 240.03928 * 2 1 3 5 5 C 1.53193 * 109.31535 * 178.61246 * 4 2 1 6 6 N 1.46924 * 108.77363 * 54.63599 * 5 4 2 7 7 S 1.65598 * 120.63296 * 126.41341 * 6 5 4 8 8 O 1.42101 * 106.40340 * 203.53560 * 7 6 5 9 9 O 1.42096 * 106.40217 * 336.46188 * 7 6 5 10 10 C 1.76201 * 107.21627 * 89.99918 * 7 6 5 11 11 H 1.07994 * 120.00374 * 359.97438 * 10 7 6 12 12 C 1.37884 * 120.00029 * 180.02562 * 10 7 6 13 13 N 1.31511 * 119.99552 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00315 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46773 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47209 * 119.99629 * 14 12 10 17 17 H 1.48504 * 109.47041 * 240.00106 * 14 12 10 18 18 C 1.46930 * 118.73582 * 306.38978 * 6 5 4 19 19 C 1.53041 * 109.45853 * 119.96501 * 2 1 3 20 20 O 1.42902 * 109.49627 * 61.44230 * 19 2 1 21 21 C 1.52993 * 109.50163 * 301.37471 * 19 2 1 22 22 F 1.39902 * 109.47339 * 186.29508 * 21 19 2 23 23 F 1.39904 * 109.47011 * 306.29357 * 21 19 2 24 24 F 1.39894 * 109.47242 * 66.29650 * 21 19 2 25 25 H 1.08995 * 109.47233 * 307.98973 * 1 2 3 26 26 H 1.08998 * 109.46909 * 67.99088 * 1 2 3 27 27 H 1.08998 * 109.46761 * 187.98825 * 1 2 3 28 28 H 1.09004 * 109.49237 * 298.56451 * 4 2 1 29 29 H 1.09001 * 109.49851 * 58.62514 * 4 2 1 30 30 H 1.09002 * 109.58566 * 174.42040 * 5 4 2 31 31 H 1.09000 * 109.58628 * 294.84965 * 5 4 2 32 32 H 0.97002 * 119.99768 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.58576 * 293.82075 * 18 6 5 34 34 H 1.09001 * 109.58626 * 173.39837 * 18 6 5 35 35 H 0.96698 * 114.00359 * 179.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 -1.2501 5 6 3.5715 -0.6883 -1.2642 6 7 4.0680 -1.2487 0.0000 7 16 5.1667 -2.4876 0.0000 8 8 5.0254 -3.1493 1.2496 9 8 5.0259 -3.1488 -1.2499 10 6 6.7720 -1.7611 0.0005 11 1 6.8783 -0.6864 0.0003 12 6 7.8924 -2.5647 0.0000 13 7 7.7629 -3.8734 -0.0003 14 14 9.5942 -1.7946 -0.0002 15 1 9.4679 -0.3149 -0.0005 16 1 10.3341 -2.2284 1.2120 17 1 10.3335 -2.2280 -1.2130 18 6 3.5714 -0.6885 1.2643 19 6 2.0399 -0.7207 1.2501 20 8 1.5915 -2.0775 1.2346 21 6 1.5020 -0.0195 2.4990 22 9 2.0811 -0.5878 3.6388 23 9 1.8208 1.3416 2.4433 24 9 0.1125 -0.1710 2.5570 25 1 -0.3633 0.6325 0.8099 26 1 -0.3633 0.3851 -0.9528 27 1 -0.3633 -1.0177 0.1428 28 1 1.6979 -1.7555 -1.2383 29 1 1.6569 -0.2209 -2.1398 30 1 3.9419 -1.2842 -2.0984 31 1 3.9144 0.3412 -1.3672 32 1 8.5511 -4.4388 -0.0002 33 1 3.9143 0.3410 1.3674 34 1 3.9417 -1.2844 2.0984 35 1 1.8787 -2.5955 1.9990 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:31 Heat of formation + Delta-G solvation = -293.187938 kcal Electronic energy + Delta-G solvation = -27228.918297 eV Core-core repulsion = 22745.372921 eV Total energy + Delta-G solvation = -4483.545376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.074 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.19897 -47.67463 -47.64455 -39.43829 -35.63649 -35.26719 -34.04188 -33.49673 -33.06797 -30.82754 -27.85474 -26.18471 -25.72452 -22.79010 -22.42474 -20.24360 -19.13167 -18.49100 -18.39925 -18.31466 -17.09357 -16.42697 -15.99600 -15.29257 -15.10802 -14.76988 -14.58135 -14.37159 -14.19265 -14.11862 -13.99235 -13.75184 -13.60792 -13.55034 -13.38065 -13.24459 -12.73989 -12.24248 -12.02998 -11.91515 -11.59262 -11.32173 -11.27283 -11.01582 -10.75206 -10.69483 -10.62195 -10.48914 -10.36513 -10.12361 -9.99547 -9.30891 -8.99506 -8.33695 -6.75419 -5.38310 2.09455 2.65325 3.02080 3.10594 3.17559 3.63945 3.69380 3.89305 4.00735 4.24947 4.37327 4.58577 4.61515 4.76895 4.96140 5.14736 5.37993 5.57934 5.59866 5.63180 5.71507 5.77825 5.88562 5.93031 5.95600 6.11700 6.26227 6.30721 6.52788 6.63176 7.26935 7.35917 7.43061 7.91878 8.83666 10.18211 Molecular weight = 317.07amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.005096 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.254765 B = 5492.862572 C = 5830.001240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 H 0.093 0.907 4 C -0.120 4.120 5 C 0.118 3.882 6 N -0.999 5.999 7 S 2.716 3.284 8 O -1.002 7.002 9 O -0.998 6.998 10 C -1.021 5.021 11 H 0.103 0.897 12 C 0.132 3.868 13 N -0.845 5.845 14 Si 0.921 3.079 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.270 1.270 18 C 0.100 3.900 19 C 0.092 3.908 20 O -0.520 6.520 21 C 0.425 3.575 22 F -0.181 7.181 23 F -0.179 7.179 24 F -0.174 7.174 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.291 0.709 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.344 9.541 1.672 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.094 4.094 3 H 0.111 0.889 4 C -0.159 4.159 5 C -0.008 4.008 6 N -0.832 5.832 7 S 2.817 3.183 8 O -0.992 6.992 9 O -0.989 6.989 10 C -1.155 5.155 11 H 0.121 0.879 12 C -0.086 4.086 13 N -0.475 5.475 14 Si 0.744 3.256 15 H -0.186 1.186 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.028 4.028 19 C 0.046 3.954 20 O -0.326 6.326 21 C 0.369 3.631 22 F -0.162 7.162 23 F -0.161 7.161 24 F -0.155 7.155 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.792 8.620 1.126 14.650 hybrid contribution 1.450 0.863 0.923 1.923 sum -10.342 9.483 2.049 14.180 Atomic orbital electron populations 1.22102 0.93811 1.03434 1.02174 1.21160 0.96942 0.98859 0.92487 0.88921 1.21895 0.96099 1.02164 0.95746 1.21360 0.93359 0.99371 0.86691 1.58129 1.60369 1.56135 1.08601 1.00565 0.73626 0.71205 0.72894 1.93338 1.87678 1.72434 1.45786 1.93354 1.87609 1.72263 1.45637 1.30646 1.13423 1.04518 1.66904 0.87870 1.24764 1.01377 0.93969 0.88452 1.69899 1.33649 1.03876 1.40034 0.86129 0.80578 0.80222 0.78641 1.18580 1.19545 1.19537 1.21800 0.89961 1.01598 0.89408 1.22840 0.96389 0.84752 0.91392 1.86610 1.77117 1.19084 1.49782 1.21674 0.76382 0.78008 0.86995 1.93201 1.84228 1.84542 1.54271 1.93167 1.92548 1.33779 1.96577 1.93153 1.30429 1.95333 1.96613 0.92010 0.92157 0.91122 0.90040 0.90471 0.88220 0.92049 0.89858 0.90231 0.87300 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.99 37.16 0.30 -1.45 16 2 C -0.08 -0.94 1.85 -90.58 -0.17 -1.11 16 3 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 4 C -0.12 -1.60 5.21 -26.61 -0.14 -1.74 16 5 C 0.12 1.88 6.48 -3.71 -0.02 1.86 16 6 N -1.00 -19.12 3.23 -113.52 -0.37 -19.48 16 7 S 2.72 69.38 5.01 -107.50 -0.54 68.85 16 8 O -1.00 -27.67 16.61 -57.17 -0.95 -28.62 16 9 O -1.00 -28.18 16.61 -57.17 -0.95 -29.13 16 10 C -1.02 -27.38 9.75 30.60 0.30 -27.08 16 11 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 12 C 0.13 3.62 5.46 -17.82 -0.10 3.53 16 13 N -0.84 -24.41 13.19 55.43 0.73 -23.68 16 14 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 16 15 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 18 C 0.10 1.63 5.10 -3.71 -0.02 1.61 16 19 C 0.09 1.29 0.31 -90.50 -0.03 1.26 16 20 O -0.52 -7.69 11.28 -35.23 -0.40 -8.09 16 21 C 0.42 5.56 2.25 37.15 0.08 5.65 16 22 F -0.18 -2.48 16.50 2.25 0.04 -2.44 16 23 F -0.18 -2.27 16.24 2.25 0.04 -2.23 16 24 F -0.17 -2.23 14.05 2.25 0.03 -2.20 16 25 H 0.06 0.67 6.08 -51.93 -0.32 0.35 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 27 H 0.07 0.86 7.50 -51.93 -0.39 0.47 16 28 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.73 6.92 -51.93 -0.36 1.37 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.29 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 34 H 0.11 1.89 6.63 -51.93 -0.34 1.54 16 35 H 0.39 5.05 8.88 45.56 0.40 5.46 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -33.28 307.69 -5.57 -38.84 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.02 Total: 5.85 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 0.20 Total: -17.47 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.36 Total: -43.17 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -2.30 Total: -65.84 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.11 Total: -6.87 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 69.38 SS G_CDS: -0.54 Total: 68.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.28 -5.57 -38.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.343 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds