Wall clock time and date at job start Fri Apr 10 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99990 * 2 1 4 4 O 1.20819 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99855 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.42508 * 341.74169 * 5 3 2 7 7 C 1.55702 * 109.44624 * 101.92128 * 5 3 2 8 8 S 1.84240 * 99.66507 * 160.59366 * 7 5 3 9 9 C 1.83562 * 94.86381 * 326.67952 * 8 7 5 10 10 H 1.08998 * 110.42775 * 137.42900 * 9 8 7 11 11 C 1.50699 * 110.33814 * 259.63409 * 9 8 7 12 12 O 1.20832 * 119.99979 * 225.55578 * 11 9 8 13 13 O 1.34231 * 120.00108 * 45.55349 * 11 9 8 14 14 C 1.45194 * 116.99702 * 179.97438 * 13 11 9 15 15 N 1.46137 * 109.47091 * 221.76740 * 5 3 2 16 16 C 1.34776 * 122.49549 * 29.23203 * 15 5 3 17 17 O 1.21284 * 120.00064 * 355.39444 * 16 15 5 18 18 C 1.50700 * 119.99800 * 175.40145 * 16 15 5 19 19 C 1.50695 * 109.47028 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00426 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00173 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99784 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47207 * 179.97438 * 23 21 19 25 25 H 1.48507 * 109.47187 * 299.99414 * 23 21 19 26 26 H 1.48502 * 109.47524 * 59.99466 * 23 21 19 27 27 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46886 * 300.00008 * 1 2 3 29 29 H 1.09000 * 109.46904 * 59.99966 * 1 2 3 30 30 H 1.09002 * 111.54363 * 42.93380 * 7 5 3 31 31 H 1.08997 * 111.24029 * 278.13612 * 7 5 3 32 32 H 1.09007 * 109.46598 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.47918 * 300.00066 * 14 13 11 34 34 H 1.08997 * 109.47143 * 60.00874 * 14 13 11 35 35 H 1.08998 * 109.46994 * 59.99786 * 18 16 15 36 36 H 1.08995 * 109.46995 * 300.00013 * 18 16 15 37 37 H 0.97003 * 120.00334 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9794 0.3189 0.3230 7 6 4.0688 1.6045 -1.4358 8 16 5.7567 2.2266 -1.0380 9 6 5.2734 2.9712 0.5688 10 1 6.0260 2.7589 1.3281 11 6 5.0849 4.4590 0.4210 12 8 5.5578 5.2122 1.2390 13 8 4.3916 4.9477 -0.6195 14 6 4.2496 6.3905 -0.6976 15 7 3.9987 2.3267 0.9183 16 6 3.2852 2.6761 2.0070 17 8 2.2019 2.1698 2.2102 18 6 3.8332 3.6959 2.9716 19 6 2.8487 3.9066 4.0930 20 1 1.9189 3.3572 4.1056 21 6 3.1344 4.8014 5.1023 22 7 4.2664 5.4707 5.0867 23 14 1.9144 5.0619 6.4926 24 1 2.4544 6.0670 7.4431 25 1 0.6263 5.5483 5.9362 26 1 1.6928 3.7774 7.2040 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.4609 2.3784 -1.9046 31 1 4.1118 0.7082 -2.0545 32 1 3.6692 6.6510 -1.5827 33 1 3.7365 6.7540 0.1928 34 1 5.2360 6.8498 -0.7614 35 1 3.9961 4.6389 2.4498 36 1 4.7785 3.3386 3.3799 37 1 4.4676 6.1000 5.7969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:39 Heat of formation + Delta-G solvation = -170.383998 kcal Electronic energy + Delta-G solvation = -26130.319833 eV Core-core repulsion = 22193.956376 eV Total energy + Delta-G solvation = -3936.363457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96822 -40.16194 -38.80693 -36.36397 -36.30564 -35.80846 -33.01564 -31.87932 -29.10518 -28.57590 -27.85251 -26.79837 -24.68302 -23.52926 -21.66059 -20.88684 -19.32702 -17.98548 -17.80529 -17.07436 -16.74148 -16.56776 -16.23724 -16.08116 -15.94457 -15.47189 -15.03732 -14.57195 -14.38720 -13.88129 -13.40762 -13.33159 -13.16657 -12.97885 -12.83478 -12.62262 -12.37246 -12.00815 -11.94599 -11.81002 -11.28437 -11.03382 -10.83261 -10.73484 -10.64096 -10.57796 -10.39640 -10.09155 -9.99690 -9.28096 -8.98510 -8.87970 -8.42450 -8.12055 -6.03431 -4.06266 1.03653 1.55749 1.99166 2.46462 2.68437 2.75699 3.18896 3.34611 3.36697 3.38726 3.44658 4.03426 4.46318 4.58113 4.71178 4.79455 5.04133 5.06242 5.20202 5.30199 5.31940 5.32461 5.39421 5.42526 5.52046 5.65397 5.73840 6.18689 6.50692 6.54199 7.07678 7.23907 7.36831 7.86308 7.93037 7.97154 8.20428 8.75352 9.01973 9.57601 11.07161 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.006460 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.798459 B = 4333.247846 C = 5935.517001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.473 6.473 5 C 0.141 3.859 6 H 0.118 0.882 7 C -0.073 4.073 8 S -0.205 6.205 9 C 0.198 3.802 10 H 0.158 0.842 11 C 0.455 3.545 12 O -0.455 6.455 13 O -0.346 6.346 14 C 0.037 3.963 15 N -0.614 5.614 16 C 0.528 3.472 17 O -0.503 6.503 18 C 0.006 3.994 19 C -0.516 4.516 20 H 0.073 0.927 21 C 0.059 3.941 22 N -0.888 5.888 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.275 1.275 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 -8.026 -16.280 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.356 6.356 5 C 0.035 3.965 6 H 0.136 0.864 7 C -0.222 4.222 8 S 0.023 5.977 9 C -0.018 4.018 10 H 0.175 0.825 11 C 0.291 3.709 12 O -0.338 6.338 13 O -0.262 6.262 14 C -0.057 4.057 15 N -0.358 5.358 16 C 0.320 3.680 17 O -0.375 6.375 18 C -0.033 4.033 19 C -0.554 4.554 20 H 0.091 0.909 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.729 3.271 24 H -0.212 1.212 25 H -0.202 1.202 26 H -0.201 1.201 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.832 -7.625 -16.361 18.143 hybrid contribution -1.731 0.574 1.401 2.300 sum 0.102 -7.051 -14.960 16.538 Atomic orbital electron populations 1.23204 0.76101 1.03171 1.02763 1.86392 1.23572 1.33009 1.84702 1.22738 0.90527 0.82076 0.73513 1.90708 1.66155 1.36044 1.42735 1.21420 0.89892 0.94887 0.90317 0.86447 1.24824 0.94627 1.06006 0.96736 1.88164 1.14152 1.72707 1.22638 1.23573 0.90924 0.88390 0.98915 0.82497 1.23279 0.76659 0.91334 0.79599 1.90848 1.44344 1.58930 1.39698 1.86470 1.67560 1.26217 1.45910 1.23295 1.02386 0.76494 1.03525 1.48932 1.22234 1.38197 1.26433 1.22530 0.83814 0.82718 0.78936 1.90572 1.20205 1.53981 1.72709 1.19556 0.98525 0.92375 0.92874 1.21007 1.04313 1.24177 1.05950 0.90859 1.24995 0.95606 0.95498 0.98208 1.69996 1.22902 1.26248 1.33523 0.86502 0.81231 0.77926 0.81456 1.21219 1.20162 1.20086 0.88386 0.91424 0.92270 0.86739 0.84630 0.88256 0.91348 0.91830 0.91948 0.92878 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.36 -5.35 10.57 -39.25 -0.41 -5.77 16 3 C 0.47 8.09 5.04 36.01 0.18 8.27 16 4 O -0.47 -9.87 14.62 -26.58 -0.39 -10.26 16 5 C 0.14 2.06 3.37 -67.84 -0.23 1.83 16 6 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 7 C -0.07 -0.79 7.05 38.60 0.27 -0.52 16 8 S -0.21 -2.48 22.47 -107.50 -2.42 -4.89 16 9 C 0.20 3.17 3.49 -4.89 -0.02 3.15 16 10 H 0.16 2.35 8.14 -51.93 -0.42 1.93 16 11 C 0.46 8.34 5.47 36.01 0.20 8.54 16 12 O -0.46 -9.77 14.87 -18.75 -0.28 -10.05 16 13 O -0.35 -5.74 10.21 -39.26 -0.40 -6.14 16 14 C 0.04 0.51 10.55 101.05 1.07 1.57 16 15 N -0.61 -11.15 2.93 -162.42 -0.48 -11.63 16 16 C 0.53 12.39 6.99 -10.99 -0.08 12.31 16 17 O -0.50 -13.03 12.22 -18.12 -0.22 -13.25 16 18 C 0.01 0.15 4.06 -29.04 -0.12 0.03 16 19 C -0.52 -15.35 8.92 -34.44 -0.31 -15.65 16 20 H 0.07 2.26 6.75 -52.48 -0.35 1.90 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 23 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 31 H 0.14 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 34 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.06 1.74 5.02 -51.93 -0.26 1.48 16 36 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -37.06 332.57 -6.33 -43.38 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.40 Total: -0.70 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 1.94 Total: 22.75 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.26 Total: -37.62 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.70 Total: -45.46 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.42 Total: -4.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.06 -6.33 -43.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.002 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds