Wall clock time and date at job start Fri Apr 10 2020 14:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47113 * 77.15235 * 3 2 1 5 5 C 1.37099 * 120.00320 * 269.90800 * 4 3 2 6 6 H 1.07994 * 120.00354 * 189.36016 * 5 4 3 7 7 C 1.38953 * 119.99644 * 9.35920 * 5 4 3 8 8 N 1.31411 * 119.99704 * 24.96429 * 7 5 4 9 9 Si 1.86797 * 120.00024 * 204.96323 * 7 5 4 10 10 H 1.48496 * 109.46985 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47194 * 120.00389 * 9 7 5 12 12 H 1.48503 * 109.46909 * 239.99929 * 9 7 5 13 13 C 1.34785 * 120.00104 * 89.91013 * 4 3 2 14 14 O 1.21285 * 119.99884 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99734 * 359.97438 * 13 4 3 16 16 H 1.09001 * 110.85610 * 56.21094 * 15 13 4 17 17 C 1.54627 * 110.96899 * 292.38202 * 15 13 4 18 18 C 1.51288 * 104.13192 * 216.86951 * 17 15 13 19 19 O 1.21276 * 124.94198 * 196.51259 * 18 17 15 20 20 N 1.34416 * 110.11502 * 16.64413 * 18 17 15 21 21 C 1.46498 * 124.34765 * 180.25248 * 20 18 17 22 22 C 1.50700 * 109.47300 * 269.70192 * 21 20 18 23 23 C 1.34516 * 125.78651 * 89.99997 * 22 21 20 24 24 C 1.41383 * 106.83750 * 180.23079 * 23 22 21 25 25 C 1.34510 * 106.84516 * 359.56965 * 24 23 22 26 26 O 1.34300 * 125.79546 * 269.96106 * 22 21 20 27 27 C 1.46765 * 111.30161 * 359.97438 * 20 18 17 28 28 H 1.08999 * 109.47549 * 317.15308 * 3 2 1 29 29 H 1.09005 * 109.46842 * 197.14879 * 3 2 1 30 30 H 0.97007 * 119.99973 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.48632 * 335.75717 * 17 15 13 32 32 H 1.08995 * 110.49191 * 98.40721 * 17 15 13 33 33 H 1.09000 * 109.47094 * 149.70703 * 21 20 18 34 34 H 1.08995 * 109.47114 * 29.70163 * 21 20 18 35 35 H 1.08003 * 126.58349 * 359.96668 * 23 22 21 36 36 H 1.08003 * 126.57480 * 179.73917 * 24 23 22 37 37 H 1.07999 * 125.79374 * 180.12082 * 25 24 23 38 38 H 1.09008 * 110.24409 * 102.24607 * 27 20 18 39 39 H 1.09002 * 110.24840 * 224.15429 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3063 -1.3466 5 6 3.3274 -1.6073 -1.7122 6 1 3.8273 -1.8258 -2.6442 7 6 2.9182 -2.6448 -0.8834 8 7 1.9243 -2.4617 -0.0434 9 14 3.7808 -4.2998 -0.9634 10 1 4.8591 -4.2471 -1.9829 11 1 4.3692 -4.6159 0.3630 12 1 2.8000 -5.3518 -1.3332 13 6 3.3190 0.6905 -2.2263 14 8 3.7238 0.4364 -3.3410 15 6 3.0647 2.1205 -1.8247 16 1 3.6340 2.3801 -0.9322 17 6 1.5544 2.3754 -1.6122 18 6 1.3393 3.7784 -2.1357 19 8 0.3685 4.4662 -1.9009 20 7 2.3795 4.1506 -2.9014 21 6 2.4957 5.4533 -3.5614 22 6 1.8850 5.3759 -4.9370 23 6 0.6000 5.6305 -5.2426 24 6 0.4635 5.4323 -6.6358 25 6 1.6752 5.0778 -7.0997 26 8 2.5315 5.0416 -6.0657 27 6 3.3870 3.0867 -2.9859 28 1 2.9718 -0.7526 0.6988 29 1 2.9709 0.9829 0.3030 30 1 1.6384 -3.1861 0.5349 31 1 0.9628 1.6574 -2.1800 32 1 1.3042 2.3241 -0.5526 33 1 3.5478 5.7253 -3.6459 34 1 1.9717 6.2066 -2.9732 35 1 -0.1790 5.9251 -4.5550 36 1 -0.4399 5.5467 -7.2166 37 1 1.9173 4.8548 -8.1283 38 1 3.3079 2.5674 -3.9411 39 1 4.3869 3.5036 -2.8655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162021004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:52 Heat of formation + Delta-G solvation = 2.532102 kcal Electronic energy + Delta-G solvation = -26537.767864 eV Core-core repulsion = 22641.584506 eV Total energy + Delta-G solvation = -3896.183358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57599 -40.54851 -38.72980 -36.30303 -35.77003 -34.44692 -33.64016 -32.83131 -31.88890 -29.84487 -27.60327 -27.47725 -26.25615 -25.02344 -22.53212 -21.71917 -20.82858 -19.64448 -18.94819 -18.07109 -17.61551 -17.14066 -16.70409 -16.31618 -15.78724 -15.62566 -15.19302 -14.77577 -14.34923 -14.23016 -13.93489 -13.54959 -13.32486 -13.10631 -12.96858 -12.84620 -12.76453 -12.57790 -12.45204 -12.04766 -11.80303 -11.70880 -11.42158 -11.24028 -11.16294 -11.01876 -10.62724 -10.43188 -10.35788 -9.96198 -9.79427 -9.35980 -8.90443 -8.67896 -8.52723 -8.22659 -6.63576 -4.06294 1.58724 2.50556 2.63484 2.98552 3.00405 3.16596 3.19783 3.24447 3.39796 3.67702 3.93626 4.02944 4.37238 4.56705 4.59486 4.73332 4.76361 4.93670 5.00527 5.09599 5.14020 5.18711 5.26841 5.34753 5.53462 5.64007 5.75101 5.79372 5.90632 5.95125 6.02953 6.07180 6.21935 6.44815 6.45156 6.47517 7.02446 7.16018 7.37152 7.73193 8.15103 8.22652 8.71053 8.87339 9.07534 9.57967 10.41655 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.003667 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.551132 B = 7633.365629 C = 8297.813018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.244 3.756 3 C 0.217 3.783 4 N -0.434 5.434 5 C -0.317 4.317 6 H 0.114 0.886 7 C 0.034 3.966 8 N -0.871 5.871 9 Si 0.925 3.075 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.458 3.542 14 O -0.569 6.569 15 C -0.116 4.116 16 H 0.108 0.892 17 C -0.143 4.143 18 C 0.527 3.473 19 O -0.530 6.530 20 N -0.618 5.618 21 C 0.210 3.790 22 C -0.039 4.039 23 C -0.187 4.187 24 C -0.219 4.219 25 C -0.036 4.036 26 O -0.171 6.171 27 C 0.120 3.880 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.275 0.725 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.202 0.798 38 H 0.093 0.907 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 13.489 -3.673 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.074 4.074 3 C 0.089 3.911 4 N -0.153 5.153 5 C -0.444 4.444 6 H 0.131 0.869 7 C -0.170 4.170 8 N -0.509 5.509 9 Si 0.752 3.248 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.209 1.209 13 C 0.246 3.754 14 O -0.452 6.452 15 C -0.138 4.138 16 H 0.126 0.874 17 C -0.184 4.184 18 C 0.315 3.685 19 O -0.407 6.407 20 N -0.352 5.352 21 C 0.088 3.912 22 C -0.090 4.090 23 C -0.207 4.207 24 C -0.238 4.238 25 C -0.105 4.105 26 O -0.067 6.067 27 C -0.003 4.003 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.219 0.781 38 H 0.111 0.889 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.224 13.565 -3.987 14.502 hybrid contribution 0.276 -1.119 -0.061 1.154 sum 3.500 12.447 -4.048 13.548 Atomic orbital electron populations 1.80955 1.13427 1.12301 1.07965 1.29129 0.95248 0.90041 0.92974 1.18896 0.81952 1.01746 0.88459 1.43669 1.55893 1.06536 1.09250 1.19811 1.36885 0.79579 1.08089 0.86876 1.25254 0.94948 1.00183 0.96596 1.69891 1.21844 1.34635 1.24542 0.85877 0.79595 0.80905 0.78467 1.18991 1.20326 1.20876 1.19445 0.85091 0.85429 0.85415 1.90560 1.50552 1.83646 1.20471 1.22158 0.96304 0.95546 0.99838 0.87360 1.22467 0.96661 0.95011 1.04239 1.20933 0.81504 0.88549 0.77501 1.90691 1.30416 1.59058 1.60510 1.48428 1.22253 1.15450 1.49092 1.19628 1.01948 0.85264 0.84385 1.22943 0.92695 1.05349 0.88059 1.21722 0.96502 1.06373 0.96105 1.21863 0.98886 1.07777 0.95269 1.24052 0.88837 1.05207 0.92364 1.84024 1.39278 1.67981 1.15417 1.22036 0.91168 0.86750 1.00299 0.85265 0.89806 0.91434 0.87357 0.87702 0.88436 0.86889 0.83358 0.83536 0.78135 0.88884 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.69 18.54 42.15 0.78 -9.91 16 2 C 0.24 5.09 10.43 -20.76 -0.22 4.88 16 3 C 0.22 3.96 4.76 -6.83 -0.03 3.93 16 4 N -0.43 -9.30 2.59 -117.93 -0.30 -9.60 16 5 C -0.32 -7.68 9.42 -14.93 -0.14 -7.82 16 6 H 0.11 2.93 7.31 -52.49 -0.38 2.55 16 7 C 0.03 0.80 4.89 -17.47 -0.09 0.72 16 8 N -0.87 -20.79 9.18 55.50 0.51 -20.28 16 9 Si 0.93 18.72 29.62 -169.99 -5.04 13.68 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.46 9.30 6.90 -10.98 -0.08 9.22 16 14 O -0.57 -13.52 15.10 5.55 0.08 -13.43 16 15 C -0.12 -1.76 2.54 -90.15 -0.23 -1.99 16 16 H 0.11 1.27 7.25 -51.93 -0.38 0.90 16 17 C -0.14 -2.36 4.47 -26.74 -0.12 -2.48 16 18 C 0.53 8.70 8.02 -10.86 -0.09 8.62 16 19 O -0.53 -10.17 17.59 5.56 0.10 -10.07 16 20 N -0.62 -8.58 2.92 -173.79 -0.51 -9.08 16 21 C 0.21 2.40 6.46 -5.19 -0.03 2.37 16 22 C -0.04 -0.52 6.90 -35.62 -0.25 -0.77 16 23 C -0.19 -2.53 10.81 -39.70 -0.43 -2.96 16 24 C -0.22 -2.62 10.91 -39.70 -0.43 -3.06 16 25 C -0.04 -0.41 12.09 29.41 0.36 -0.05 16 26 O -0.17 -2.29 10.65 5.72 0.06 -2.23 16 27 C 0.12 1.68 6.71 -3.13 -0.02 1.66 16 28 H 0.13 2.44 6.36 -51.93 -0.33 2.11 16 29 H 0.08 1.13 6.12 -51.93 -0.32 0.81 16 30 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 31 H 0.11 2.10 7.71 -51.93 -0.40 1.70 16 32 H 0.10 1.66 6.40 -51.93 -0.33 1.32 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.11 1.19 7.92 -51.93 -0.41 0.78 16 35 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.09 1.56 6.96 -51.92 -0.36 1.20 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -32.06 337.61 -5.18 -37.24 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.16 Total: 6.35 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -1.79 Total: 12.25 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.48 Total: -48.88 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.24 Total: -25.74 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.04 Total: 13.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.06 -5.18 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162021004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.776 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds