Wall clock time and date at job start Fri Apr 10 2020 14:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47113 * 77.15235 * 3 2 1 5 5 C 1.37099 * 120.00320 * 269.90800 * 4 3 2 6 6 H 1.07994 * 120.00354 * 189.36016 * 5 4 3 7 7 C 1.38953 * 119.99644 * 9.35920 * 5 4 3 8 8 N 1.31411 * 119.99704 * 24.96429 * 7 5 4 9 9 Si 1.86797 * 120.00024 * 204.96323 * 7 5 4 10 10 H 1.48496 * 109.46985 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47194 * 120.00389 * 9 7 5 12 12 H 1.48503 * 109.46909 * 239.99929 * 9 7 5 13 13 C 1.34785 * 120.00104 * 89.91013 * 4 3 2 14 14 O 1.21285 * 119.99884 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99734 * 359.97438 * 13 4 3 16 16 H 1.09001 * 110.85610 * 56.21094 * 15 13 4 17 17 C 1.54627 * 110.96899 * 292.38202 * 15 13 4 18 18 C 1.51288 * 104.13192 * 216.86951 * 17 15 13 19 19 O 1.21276 * 124.94198 * 196.51259 * 18 17 15 20 20 N 1.34416 * 110.11502 * 16.64413 * 18 17 15 21 21 C 1.46498 * 124.34765 * 180.25248 * 20 18 17 22 22 C 1.50700 * 109.47300 * 269.70192 * 21 20 18 23 23 C 1.34516 * 125.78651 * 89.99997 * 22 21 20 24 24 C 1.41383 * 106.83750 * 180.23079 * 23 22 21 25 25 C 1.34510 * 106.84516 * 359.56965 * 24 23 22 26 26 O 1.34300 * 125.79546 * 269.96106 * 22 21 20 27 27 C 1.46765 * 111.30161 * 359.97438 * 20 18 17 28 28 H 1.08999 * 109.47549 * 317.15308 * 3 2 1 29 29 H 1.09005 * 109.46842 * 197.14879 * 3 2 1 30 30 H 0.97007 * 119.99973 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.48632 * 335.75717 * 17 15 13 32 32 H 1.08995 * 110.49191 * 98.40721 * 17 15 13 33 33 H 1.09000 * 109.47094 * 149.70703 * 21 20 18 34 34 H 1.08995 * 109.47114 * 29.70163 * 21 20 18 35 35 H 1.08003 * 126.58349 * 359.96668 * 23 22 21 36 36 H 1.08003 * 126.57480 * 179.73917 * 24 23 22 37 37 H 1.07999 * 125.79374 * 180.12082 * 25 24 23 38 38 H 1.09008 * 110.24409 * 102.24607 * 27 20 18 39 39 H 1.09002 * 110.24840 * 224.15429 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3063 -1.3466 5 6 3.3274 -1.6073 -1.7122 6 1 3.8273 -1.8258 -2.6442 7 6 2.9182 -2.6448 -0.8834 8 7 1.9243 -2.4617 -0.0434 9 14 3.7808 -4.2998 -0.9634 10 1 4.8591 -4.2471 -1.9829 11 1 4.3692 -4.6159 0.3630 12 1 2.8000 -5.3518 -1.3332 13 6 3.3190 0.6905 -2.2263 14 8 3.7238 0.4364 -3.3410 15 6 3.0647 2.1205 -1.8247 16 1 3.6340 2.3801 -0.9322 17 6 1.5544 2.3754 -1.6122 18 6 1.3393 3.7784 -2.1357 19 8 0.3685 4.4662 -1.9009 20 7 2.3795 4.1506 -2.9014 21 6 2.4957 5.4533 -3.5614 22 6 1.8850 5.3759 -4.9370 23 6 0.6000 5.6305 -5.2426 24 6 0.4635 5.4323 -6.6358 25 6 1.6752 5.0778 -7.0997 26 8 2.5315 5.0416 -6.0657 27 6 3.3870 3.0867 -2.9859 28 1 2.9718 -0.7526 0.6988 29 1 2.9709 0.9829 0.3030 30 1 1.6384 -3.1861 0.5349 31 1 0.9628 1.6574 -2.1800 32 1 1.3042 2.3241 -0.5526 33 1 3.5478 5.7253 -3.6459 34 1 1.9717 6.2066 -2.9732 35 1 -0.1790 5.9251 -4.5550 36 1 -0.4399 5.5467 -7.2166 37 1 1.9173 4.8548 -8.1283 38 1 3.3079 2.5674 -3.9411 39 1 4.3869 3.5036 -2.8655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162021004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:51 Heat of formation + Delta-G solvation = -18.028722 kcal Electronic energy + Delta-G solvation = -26538.659449 eV Core-core repulsion = 22641.584506 eV Total energy + Delta-G solvation = -3897.074942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.52947 -41.87302 -40.26486 -37.79438 -37.29936 -36.14498 -34.82612 -33.90860 -33.51292 -30.94853 -29.17400 -28.78056 -27.42826 -26.51269 -23.90250 -22.69165 -21.85592 -20.93219 -20.32955 -19.78708 -18.68431 -18.50015 -18.02699 -17.67946 -17.12085 -16.80243 -16.46175 -16.16860 -15.88583 -15.55352 -15.36654 -14.85376 -14.76740 -14.50915 -14.21934 -14.09514 -13.82154 -13.77618 -13.68675 -13.56145 -13.36322 -13.09213 -12.91665 -12.79414 -12.45234 -12.36252 -12.26986 -12.05368 -11.99958 -11.18181 -11.09232 -10.91169 -10.42178 -9.98431 -9.96747 -9.50216 -8.42259 -5.90762 0.61252 1.34013 1.37863 1.51200 1.56520 1.63013 1.78886 1.97730 2.08932 2.17279 2.31270 2.37799 2.92053 3.00016 3.29645 3.44051 3.65229 3.72308 3.85322 3.91118 4.07186 4.08260 4.16020 4.29749 4.43081 4.53306 4.53684 4.58983 4.79397 4.84782 4.94721 4.96202 5.01733 5.14315 5.37971 5.51139 5.51340 5.86946 6.00269 6.16281 6.38532 6.96971 7.07110 7.12205 7.36050 7.89942 8.60837 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.003667 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.551132 B = 7633.365629 C = 8297.813018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.259 3.741 3 C 0.216 3.784 4 N -0.447 5.447 5 C -0.342 4.342 6 H 0.087 0.913 7 C 0.010 3.990 8 N -0.887 5.887 9 Si 0.982 3.018 10 H -0.271 1.271 11 H -0.263 1.263 12 H -0.292 1.292 13 C 0.459 3.541 14 O -0.609 6.609 15 C -0.104 4.104 16 H 0.159 0.841 17 C -0.139 4.139 18 C 0.526 3.474 19 O -0.562 6.562 20 N -0.606 5.606 21 C 0.206 3.794 22 C -0.053 4.053 23 C -0.209 4.209 24 C -0.236 4.236 25 C -0.033 4.033 26 O -0.183 6.183 27 C 0.124 3.876 28 H 0.127 0.873 29 H 0.142 0.858 30 H 0.275 0.725 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.165 0.835 37 H 0.239 0.761 38 H 0.063 0.937 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.811 14.673 -3.220 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.059 4.059 3 C 0.090 3.910 4 N -0.166 5.166 5 C -0.469 4.469 6 H 0.104 0.896 7 C -0.193 4.193 8 N -0.525 5.525 9 Si 0.807 3.193 10 H -0.195 1.195 11 H -0.187 1.187 12 H -0.219 1.219 13 C 0.248 3.752 14 O -0.494 6.494 15 C -0.125 4.125 16 H 0.177 0.823 17 C -0.179 4.179 18 C 0.314 3.686 19 O -0.441 6.441 20 N -0.338 5.338 21 C 0.085 3.915 22 C -0.104 4.104 23 C -0.229 4.229 24 C -0.255 4.255 25 C -0.101 4.101 26 O -0.079 6.079 27 C 0.002 3.998 28 H 0.144 0.856 29 H 0.159 0.841 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.078 14.766 -3.529 16.009 hybrid contribution -0.327 -1.475 -0.337 1.548 sum 4.751 13.292 -3.866 14.635 Atomic orbital electron populations 1.80960 1.14877 1.13892 1.09315 1.29675 0.95798 0.88704 0.91674 1.19257 0.80178 1.04756 0.86848 1.43796 1.56171 1.05939 1.10689 1.19664 1.37891 0.81536 1.07842 0.89556 1.25792 0.94983 1.02423 0.96124 1.69966 1.22259 1.35352 1.24947 0.85051 0.78182 0.77307 0.78794 1.19506 1.18727 1.21912 1.20270 0.83133 0.87209 0.84593 1.90541 1.51848 1.84789 1.22230 1.22177 0.95885 0.92123 1.02339 0.82319 1.22342 0.97040 0.94377 1.04182 1.20873 0.81607 0.88203 0.77887 1.90676 1.31666 1.59781 1.61953 1.48427 1.21218 1.16184 1.48001 1.19975 1.04298 0.83966 0.83283 1.23223 0.92754 1.05612 0.88836 1.21914 0.96840 1.07114 0.97069 1.22185 1.00176 1.08266 0.94892 1.24821 0.88293 1.03587 0.93362 1.84023 1.39903 1.68123 1.15868 1.22047 0.93060 0.86484 0.98231 0.85566 0.84088 0.91434 0.90930 0.86880 0.84761 0.86048 0.84108 0.81784 0.74505 0.91891 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.46 18.54 20.01 0.37 -23.09 16 2 C 0.26 10.63 10.43 89.44 0.93 11.56 16 3 C 0.22 7.48 4.76 84.57 0.40 7.89 16 4 N -0.45 -18.82 2.59 -645.41 -1.67 -20.49 16 5 C -0.34 -16.73 9.42 84.04 0.79 -15.94 16 6 H 0.09 4.62 7.31 -2.91 -0.02 4.59 16 7 C 0.01 0.44 4.89 84.93 0.41 0.86 16 8 N -0.89 -42.07 9.18 21.66 0.20 -41.87 16 9 Si 0.98 38.30 29.62 68.60 2.03 40.34 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.46 18.17 6.90 87.66 0.61 18.77 16 14 O -0.61 -29.09 15.10 -3.04 -0.05 -29.13 16 15 C -0.10 -2.86 2.54 -10.49 -0.03 -2.89 16 16 H 0.16 2.85 7.25 -2.39 -0.02 2.84 16 17 C -0.14 -4.41 4.47 30.59 0.14 -4.27 16 18 C 0.53 16.76 8.02 87.90 0.70 17.47 16 19 O -0.56 -21.34 17.59 -3.02 -0.05 -21.39 16 20 N -0.61 -15.47 2.92 -822.35 -2.40 -17.87 16 21 C 0.21 4.21 6.46 85.63 0.55 4.77 16 22 C -0.05 -1.35 6.90 24.83 0.17 -1.18 16 23 C -0.21 -5.63 10.81 22.19 0.24 -5.39 16 24 C -0.24 -5.46 10.91 22.19 0.24 -5.22 16 25 C -0.03 -0.69 12.09 66.97 0.81 0.12 16 26 O -0.18 -4.62 10.65 -2.46 -0.03 -4.65 16 27 C 0.12 3.13 6.71 86.83 0.58 3.71 16 28 H 0.13 4.54 6.36 -2.39 -0.02 4.53 16 29 H 0.14 3.20 6.12 -2.38 -0.01 3.19 16 30 H 0.28 12.64 8.31 -92.70 -0.77 11.87 16 31 H 0.07 2.87 7.71 -2.39 -0.02 2.85 16 32 H 0.11 3.37 6.40 -2.39 -0.02 3.36 16 33 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.12 2.31 7.92 -2.39 -0.02 2.29 16 35 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.06 2.04 6.96 -2.38 -0.02 2.02 16 39 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -72.80 337.61 6.07 -66.73 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.10 Total: 21.17 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 6.56 Total: 30.26 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.50 Total: -103.32 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.13 Total: -55.17 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.34 kcal Total: -72.80 6.07 -66.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162021004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.698 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds