Wall clock time and date at job start Fri Apr 10 2020 14:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99639 * 2 1 4 4 H 1.48501 * 109.47154 * 270.00223 * 3 2 1 5 5 H 1.48497 * 109.46925 * 29.99992 * 3 2 1 6 6 H 1.48496 * 109.47060 * 149.99972 * 3 2 1 7 7 C 1.37876 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99646 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00361 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00031 * 269.99667 * 10 9 7 12 12 C 1.50696 * 109.47523 * 270.00123 * 11 10 9 13 13 C 1.34518 * 125.79099 * 89.99365 * 12 11 10 14 14 C 1.41380 * 106.83797 * 180.02562 * 13 12 11 15 15 C 1.34511 * 106.84169 * 0.02562 * 14 13 12 16 16 O 1.34299 * 108.42230 * 359.73382 * 15 14 13 17 17 C 1.34776 * 119.99711 * 89.99744 * 10 9 7 18 18 O 1.21279 * 119.99712 * 180.02562 * 17 10 9 19 19 C 1.50698 * 120.00176 * 0.02562 * 17 10 9 20 20 N 1.46497 * 109.46853 * 180.02562 * 19 17 10 21 21 C 1.35864 * 119.93895 * 89.99759 * 20 19 17 22 22 C 1.36025 * 119.19223 * 179.71750 * 21 20 19 23 23 C 1.39806 * 119.08149 * 0.28293 * 22 21 20 24 24 N 1.31762 * 119.83247 * 359.97438 * 23 22 21 25 25 C 1.33525 * 120.81256 * 0.02562 * 24 23 22 26 26 O 1.21950 * 119.52244 * 179.97438 * 25 24 23 27 27 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47426 * 59.99523 * 9 7 2 29 29 H 1.09002 * 109.47181 * 299.99834 * 9 7 2 30 30 H 1.08998 * 109.46659 * 30.00344 * 11 10 9 31 31 H 1.08997 * 109.46840 * 149.99853 * 11 10 9 32 32 H 1.08002 * 126.57530 * 359.97438 * 13 12 11 33 33 H 1.08006 * 126.57381 * 179.97438 * 14 13 12 34 34 H 1.08000 * 125.78596 * 179.97438 * 15 14 13 35 35 H 1.08994 * 109.47180 * 59.99549 * 19 17 10 36 36 H 1.09000 * 109.46577 * 299.99465 * 19 17 10 37 37 H 1.08002 * 120.40671 * 359.97438 * 21 20 19 38 38 H 1.08003 * 120.46378 * 180.25418 * 22 21 20 39 39 H 1.08000 * 120.08595 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 -0.0001 11 6 4.2438 -3.2660 1.2686 12 6 5.6669 -3.0292 1.7042 13 6 6.0945 -2.0147 2.4772 14 6 7.4900 -2.1792 2.6337 15 6 7.8317 -3.2839 1.9465 16 8 6.7226 -3.7977 1.3902 17 6 4.2251 -3.2101 -1.1674 18 8 4.6290 -4.3537 -1.1675 19 6 3.9749 -2.4993 -2.4724 20 7 4.2920 -3.3968 -3.5859 21 6 3.3285 -4.2039 -4.1017 22 6 3.6381 -5.0272 -5.1394 23 6 4.9422 -5.0244 -5.6432 24 7 5.8488 -4.2300 -5.1111 25 6 5.5389 -3.4241 -4.0927 26 8 6.3965 -2.6987 -3.6178 27 1 -0.4851 0.8400 0.0004 28 1 3.8746 -0.6806 0.8905 29 1 3.8753 -0.6795 -0.8895 30 1 3.5627 -2.8820 2.0280 31 1 4.0769 -4.3351 1.1379 32 1 5.4883 -1.2256 2.8969 33 1 8.1543 -1.5399 3.1963 34 1 8.8283 -3.6910 1.8604 35 1 4.6053 -1.6120 -2.5295 36 1 2.9270 -2.2049 -2.5305 37 1 2.3278 -4.1891 -3.6956 38 1 2.8871 -5.6743 -5.5679 39 1 5.2059 -5.6718 -6.4665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343868129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:00 Heat of formation + Delta-G solvation = 12.334096 kcal Electronic energy + Delta-G solvation = -26676.996989 eV Core-core repulsion = 22781.238678 eV Total energy + Delta-G solvation = -3895.758312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27784 -41.64085 -39.26901 -36.90988 -35.74565 -35.18113 -32.93309 -32.62407 -31.25149 -30.72772 -28.47102 -28.08030 -25.60891 -24.56349 -23.30395 -22.71240 -21.43115 -20.51502 -19.14754 -18.26792 -17.49609 -17.39333 -17.10354 -16.86541 -16.59437 -15.95620 -15.46620 -15.13044 -14.96211 -14.56594 -14.30131 -14.02914 -13.81172 -13.33996 -12.91532 -12.79061 -12.61828 -12.54070 -12.45760 -12.15350 -11.95274 -11.86985 -11.58767 -11.23348 -11.06422 -10.86984 -10.73985 -10.46929 -9.86425 -9.68068 -9.55409 -9.51036 -8.91151 -8.43805 -8.28371 -8.12013 -6.40784 -4.45561 0.68262 1.76004 1.91052 2.44621 2.79502 2.90993 3.06694 3.15971 3.18971 3.33823 3.62507 3.98582 4.11442 4.33109 4.45562 4.73292 4.82776 4.90342 4.96621 5.04217 5.24473 5.25739 5.27192 5.48457 5.52981 5.59052 5.79390 5.87342 6.00842 6.12525 6.18742 6.24223 6.33122 6.47127 6.51177 6.72747 6.95958 7.21398 7.41391 7.76705 7.89740 8.14616 8.26948 8.48310 8.63215 9.17671 10.70712 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.006113 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.652065 B = 4579.549592 C = 6822.033924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.082 3.918 3 Si 0.866 3.134 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.204 3.796 10 N -0.580 5.580 11 C 0.198 3.802 12 C -0.021 4.021 13 C -0.202 4.202 14 C -0.218 4.218 15 C -0.045 4.045 16 O -0.165 6.165 17 C 0.513 3.487 18 O -0.548 6.548 19 C 0.073 3.927 20 N -0.493 5.493 21 C 0.204 3.796 22 C -0.306 4.306 23 C 0.246 3.754 24 N -0.552 5.552 25 C 0.631 3.369 26 O -0.532 6.532 27 H 0.269 0.731 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.197 0.803 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.157 0.843 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -6.874 -3.791 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.083 3.917 10 N -0.311 5.311 11 C 0.075 3.925 12 C -0.072 4.072 13 C -0.222 4.222 14 C -0.237 4.237 15 C -0.114 4.114 16 O -0.060 6.060 17 C 0.299 3.701 18 O -0.427 6.427 19 C -0.053 4.053 20 N -0.206 5.206 21 C 0.065 3.935 22 C -0.332 4.332 23 C 0.063 3.937 24 N -0.285 5.285 25 C 0.334 3.666 26 O -0.407 6.407 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.214 0.786 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.175 0.825 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.649 -6.804 -3.699 10.207 hybrid contribution -0.475 1.236 0.544 1.431 sum 6.175 -5.568 -3.155 8.893 Atomic orbital electron populations 1.69865 1.06205 1.27565 1.48447 1.24836 0.94709 0.98901 0.93831 0.86993 0.80626 0.83912 0.79254 1.19655 1.20621 1.18651 1.21315 0.88569 0.95206 1.53898 0.90013 1.19970 0.96040 0.77340 0.98364 1.47881 1.63350 1.16162 1.03705 1.19738 0.86210 0.99660 0.86870 1.23147 0.90179 0.93261 1.00663 1.21658 0.95278 1.00949 1.04299 1.21783 0.95998 1.00194 1.05766 1.24002 0.90594 0.97171 0.99623 1.84115 1.15378 1.47186 1.59350 1.20367 0.77463 0.86609 0.85659 1.90688 1.46653 1.17980 1.87381 1.22038 1.06383 0.93401 0.83439 1.46191 1.11713 1.33709 1.28944 1.22706 0.94740 0.85673 0.90373 1.21535 0.99993 1.08070 1.03589 1.23623 0.88427 0.88808 0.92836 1.69901 1.34358 1.11554 1.12646 1.18164 0.80703 0.84621 0.83153 1.90984 1.45605 1.42802 1.61306 0.92074 0.94067 0.95143 0.86416 0.88854 0.83383 0.83758 0.78601 0.85327 0.84114 0.80786 0.82534 0.81195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.62 13.96 55.43 0.77 -22.85 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 18.58 27.47 -169.99 -4.67 13.91 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 7 C -0.55 -12.95 9.83 -34.44 -0.34 -13.29 16 8 H 0.08 2.11 8.06 -52.48 -0.42 1.69 16 9 C 0.20 4.16 4.03 -5.20 -0.02 4.14 16 10 N -0.58 -11.28 2.44 -176.44 -0.43 -11.71 16 11 C 0.20 3.50 5.94 -5.20 -0.03 3.47 16 12 C -0.02 -0.37 6.90 -35.63 -0.25 -0.61 16 13 C -0.20 -3.28 10.81 -39.70 -0.43 -3.71 16 14 C -0.22 -3.19 10.91 -39.70 -0.43 -3.62 16 15 C -0.05 -0.68 12.09 29.41 0.36 -0.32 16 16 O -0.17 -3.06 10.65 5.73 0.06 -3.00 16 17 C 0.51 10.17 7.74 -10.99 -0.09 10.08 16 18 O -0.55 -12.13 16.01 5.56 0.09 -12.04 16 19 C 0.07 1.26 4.38 -5.20 -0.02 1.24 16 20 N -0.49 -8.11 2.08 -123.03 -0.26 -8.36 16 21 C 0.20 2.44 10.41 -16.56 -0.17 2.27 16 22 C -0.31 -2.92 10.07 -39.79 -0.40 -3.32 16 23 C 0.25 2.74 11.30 -17.00 -0.19 2.54 16 24 N -0.55 -9.36 10.48 -16.60 -0.17 -9.54 16 25 C 0.63 12.35 8.34 -88.17 -0.74 11.61 16 26 O -0.53 -12.54 16.74 4.96 0.08 -12.45 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.04 0.84 7.13 -51.93 -0.37 0.47 16 29 H 0.03 0.61 5.87 -51.93 -0.30 0.30 16 30 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 31 H 0.09 1.64 7.42 -51.93 -0.39 1.26 16 32 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.13 2.31 6.66 -51.93 -0.35 1.97 16 36 H 0.14 2.16 7.89 -51.93 -0.41 1.75 16 37 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.16 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -35.62 346.57 -6.51 -42.13 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.36 Total: 6.28 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -2.85 Total: 12.42 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.09 Total: -52.46 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: 0.23 Total: -27.50 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.67 Total: 13.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.62 -6.51 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343868129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.468 kcal (2) G-P(sol) polarization free energy of solvation -35.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds