Wall clock time and date at job start Fri Apr 10 2020 14:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99769 * 2 1 4 4 H 1.48494 * 109.47100 * 269.99899 * 3 2 1 5 5 H 1.48507 * 109.46900 * 29.99882 * 3 2 1 6 6 H 1.48496 * 109.47353 * 149.99336 * 3 2 1 7 7 C 1.38808 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99996 * 197.36365 * 7 2 1 9 9 N 1.36935 * 119.99952 * 17.36522 * 7 2 1 10 10 C 1.46930 * 120.63083 * 207.66557 * 9 7 2 11 11 C 1.53185 * 108.77718 * 233.63073 * 10 9 7 12 12 C 1.53044 * 109.31245 * 305.36298 * 11 10 9 13 13 C 1.53043 * 109.53709 * 61.36495 * 12 11 10 14 14 H 1.09002 * 109.52226 * 58.60068 * 13 12 11 15 15 N 1.46497 * 109.49962 * 178.68378 * 13 12 11 16 16 C 1.34774 * 120.00183 * 204.83751 * 15 13 12 17 17 O 1.21281 * 119.99819 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00110 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.35032 * 320.28972 * 18 16 15 20 20 C 1.54063 * 109.34922 * 80.00214 * 18 16 15 21 21 C 1.55610 * 104.29299 * 165.37973 * 20 18 16 22 22 S 1.83454 * 100.72420 * 322.08309 * 21 20 18 23 23 O 1.42097 * 111.24929 * 131.47271 * 22 21 20 24 24 O 1.42105 * 111.24274 * 270.72596 * 22 21 20 25 25 N 1.47059 * 109.35752 * 200.63949 * 18 16 15 26 26 C 1.46922 * 120.63051 * 27.68743 * 9 7 2 27 27 H 0.97002 * 120.00484 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.58256 * 353.41849 * 10 9 7 29 29 H 1.08996 * 109.58611 * 113.83734 * 10 9 7 30 30 H 1.09002 * 109.49927 * 65.31647 * 11 10 9 31 31 H 1.09002 * 109.50172 * 185.38292 * 11 10 9 32 32 H 1.08996 * 109.46078 * 301.34545 * 12 11 10 33 33 H 1.08999 * 109.45800 * 181.38418 * 12 11 10 34 34 H 0.97007 * 119.99764 * 24.83604 * 15 13 12 35 35 H 1.08999 * 110.46904 * 46.67834 * 20 18 16 36 36 H 1.09002 * 110.58297 * 284.13707 * 20 18 16 37 37 H 1.08997 * 111.16616 * 79.94838 * 21 20 18 38 38 H 1.08998 * 111.16829 * 204.21572 * 21 20 18 39 39 H 0.97005 * 126.30415 * 30.75860 * 25 18 16 40 40 H 1.08993 * 109.58760 * 6.58425 * 26 9 7 41 41 H 1.09006 * 109.58653 * 246.15324 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0535 -1.2232 0.2797 9 7 1.3725 -2.3611 -0.3529 10 6 1.8198 -3.6546 0.1816 11 6 2.0756 -4.6097 -0.9885 12 6 0.8201 -4.6900 -1.8601 13 6 0.5018 -3.3049 -2.4279 14 1 1.3501 -2.9465 -3.0110 15 7 -0.6817 -3.3888 -3.2872 16 6 -0.8697 -2.4814 -4.2658 17 8 -0.0588 -1.5957 -4.4353 18 6 -2.0869 -2.5681 -5.1501 19 1 -2.2887 -3.6131 -5.3854 20 6 -3.2983 -1.9679 -4.4114 21 6 -4.3655 -1.7644 -5.5255 22 16 -3.3036 -1.2247 -6.9208 23 8 -3.6016 -1.9507 -8.1055 24 8 -3.1419 0.1871 -6.9287 25 7 -1.8375 -1.8286 -6.3965 26 6 0.2283 -2.3350 -1.2741 27 1 -0.4851 0.8400 -0.0004 28 1 2.7403 -3.5169 0.7489 29 1 1.0474 -4.0690 0.8295 30 1 2.9094 -4.2394 -1.5849 31 1 2.3156 -5.6008 -0.6034 32 1 -0.0190 -5.0369 -1.2571 33 1 0.9911 -5.3879 -2.6797 34 1 -1.3301 -4.0976 -3.1518 35 1 -3.0334 -1.0126 -3.9583 36 1 -3.6660 -2.6594 -3.6532 37 1 -4.8752 -2.6994 -5.7577 38 1 -5.0786 -0.9874 -5.2503 39 1 -0.9793 -1.7124 -6.8335 40 1 0.0987 -1.3267 -1.6673 41 1 -0.6740 -2.6419 -0.7449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009564343.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:05 Heat of formation + Delta-G solvation = -76.729421 kcal Electronic energy + Delta-G solvation = -25613.404570 eV Core-core repulsion = 21849.228126 eV Total energy + Delta-G solvation = -3764.176444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.99808 -37.73792 -37.19632 -36.37657 -35.98543 -34.26254 -32.75541 -31.95062 -30.12848 -29.31184 -26.79494 -25.31770 -23.22702 -22.27681 -21.79593 -20.24076 -19.74476 -19.39362 -18.05597 -17.45654 -16.79800 -16.51539 -15.85201 -15.68434 -15.01289 -14.93136 -14.62569 -14.20854 -14.05974 -13.72652 -13.60692 -13.37956 -13.09100 -12.70422 -12.40562 -12.34348 -12.27040 -12.17021 -12.11033 -11.96033 -11.70955 -11.05771 -10.84753 -10.81149 -10.75087 -10.54760 -10.28687 -10.12893 -9.98617 -9.91262 -9.59260 -9.34695 -8.67704 -8.46813 -6.70911 -5.80030 -3.23024 0.02687 2.32016 2.73934 3.27196 3.39399 3.42229 3.48566 3.50209 3.75301 4.04796 4.22100 4.50171 4.54792 4.67827 4.93954 5.04301 5.17485 5.28051 5.34207 5.40333 5.48549 5.55867 5.57471 5.62693 6.00632 6.07177 6.26099 6.36016 6.40599 6.61943 6.70422 6.81088 6.89969 6.92595 7.21662 7.65068 7.73728 7.81234 8.41726 8.45958 9.19055 9.82791 10.36953 11.28135 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.004102 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.100285 B = 6825.102901 C = 8058.974691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.115 3.885 14 H 0.083 0.917 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.512 6.512 18 C 0.097 3.903 19 H 0.104 0.896 20 C -0.120 4.120 21 C -0.595 4.595 22 S 2.578 3.422 23 O -0.960 6.960 24 O -0.953 6.953 25 N -1.082 6.082 26 C 0.166 3.834 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.393 0.607 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.439 0.561 40 H 0.095 0.905 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -11.094 -8.912 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.010 3.990 14 H 0.101 0.899 15 N -0.367 5.367 16 C 0.291 3.709 17 O -0.386 6.386 18 C -0.016 4.016 19 H 0.122 0.878 20 C -0.160 4.160 21 C -0.725 4.725 22 S 2.672 3.328 23 O -0.949 6.949 24 O -0.942 6.942 25 N -0.849 5.849 26 C 0.039 3.961 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.227 0.773 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.280 0.720 40 H 0.113 0.887 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.954 -9.763 -9.846 16.505 hybrid contribution 0.340 0.170 0.565 0.681 sum -8.613 -9.593 -9.281 15.886 Atomic orbital electron populations 1.70003 1.05348 1.25599 1.53437 1.25009 0.95278 0.98482 1.00346 0.86304 0.79090 0.83562 0.77896 1.21197 1.21730 1.20401 1.19165 0.92800 0.84808 1.41949 0.91548 1.43961 1.36033 1.01657 1.49460 1.20961 0.97769 0.86828 0.92872 1.22006 0.96960 0.99392 0.98770 1.21672 0.98991 0.95908 0.98783 1.22048 0.86894 0.97080 0.92982 0.89920 1.46086 1.26478 1.30682 1.33501 1.20157 0.87031 0.82514 0.81208 1.90795 1.44741 1.33327 1.69707 1.21631 0.95432 0.98324 0.86220 0.87844 1.22657 0.89947 1.05827 0.97548 1.30839 1.11317 1.13590 1.16789 1.06130 0.76088 0.74778 0.75770 1.93625 1.83728 1.73674 1.43922 1.93654 1.83971 1.30013 1.86554 1.54951 1.26023 1.70636 1.33324 1.21103 0.88826 0.98954 0.87224 0.93631 0.92596 0.96368 0.92116 0.92576 0.92186 0.93064 0.77340 0.87465 0.86157 0.83790 0.83591 0.71986 0.88652 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 3 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.26 -7.10 9.58 -15.06 -0.14 -7.24 16 8 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 10 C 0.14 2.82 6.52 -3.71 -0.02 2.80 16 11 C -0.13 -2.09 6.08 -26.61 -0.16 -2.26 16 12 C -0.12 -1.69 5.35 -26.69 -0.14 -1.83 16 13 C 0.12 2.06 2.60 -67.81 -0.18 1.88 16 14 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 15 N -0.72 -9.84 5.08 -53.69 -0.27 -10.11 16 16 C 0.51 7.61 7.01 -10.99 -0.08 7.54 16 17 O -0.51 -10.45 16.09 5.56 0.09 -10.36 16 18 C 0.10 0.97 3.41 -68.22 -0.23 0.74 16 19 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.12 -1.00 6.09 -24.79 -0.15 -1.15 16 21 C -0.59 -3.75 7.51 38.55 0.29 -3.46 16 22 S 2.58 27.43 6.50 -107.50 -0.70 26.73 16 23 O -0.96 -12.54 18.13 -57.41 -1.04 -13.58 16 24 O -0.95 -14.41 18.14 -57.41 -1.04 -15.46 16 25 N -1.08 -12.23 6.31 -5.09 -0.03 -12.27 16 26 C 0.17 3.81 4.89 -3.71 -0.02 3.80 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.39 3.76 8.60 -40.82 -0.35 3.41 16 35 H 0.11 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.15 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.44 5.08 8.76 -40.34 -0.35 4.73 16 40 H 0.10 2.61 6.03 -51.93 -0.31 2.30 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -38.61 343.92 -9.68 -48.30 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.02 Total: 3.78 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.92 Total: 0.95 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.20 Total: -62.86 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.99 Total: -39.39 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Atomic # 16 Polarization: 27.43 SS G_CDS: -0.70 Total: 26.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.61 -9.68 -48.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009564343.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.432 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds