Wall clock time and date at job start Fri Apr 10 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99769 * 2 1 4 4 H 1.48494 * 109.47100 * 269.99899 * 3 2 1 5 5 H 1.48507 * 109.46900 * 29.99882 * 3 2 1 6 6 H 1.48496 * 109.47353 * 149.99336 * 3 2 1 7 7 C 1.38808 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99996 * 197.36365 * 7 2 1 9 9 N 1.36935 * 119.99952 * 17.36522 * 7 2 1 10 10 C 1.46930 * 120.63083 * 207.66557 * 9 7 2 11 11 C 1.53185 * 108.77718 * 233.63073 * 10 9 7 12 12 C 1.53044 * 109.31245 * 305.36298 * 11 10 9 13 13 C 1.53043 * 109.53709 * 61.36495 * 12 11 10 14 14 H 1.09002 * 109.52226 * 58.60068 * 13 12 11 15 15 N 1.46497 * 109.49962 * 178.68378 * 13 12 11 16 16 C 1.34774 * 120.00183 * 204.83751 * 15 13 12 17 17 O 1.21281 * 119.99819 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00110 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.35032 * 320.28972 * 18 16 15 20 20 C 1.54063 * 109.34922 * 80.00214 * 18 16 15 21 21 C 1.55610 * 104.29299 * 165.37973 * 20 18 16 22 22 S 1.83454 * 100.72420 * 322.08309 * 21 20 18 23 23 O 1.42097 * 111.24929 * 131.47271 * 22 21 20 24 24 O 1.42105 * 111.24274 * 270.72596 * 22 21 20 25 25 N 1.47059 * 109.35752 * 200.63949 * 18 16 15 26 26 C 1.46922 * 120.63051 * 27.68743 * 9 7 2 27 27 H 0.97002 * 120.00484 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.58256 * 353.41849 * 10 9 7 29 29 H 1.08996 * 109.58611 * 113.83734 * 10 9 7 30 30 H 1.09002 * 109.49927 * 65.31647 * 11 10 9 31 31 H 1.09002 * 109.50172 * 185.38292 * 11 10 9 32 32 H 1.08996 * 109.46078 * 301.34545 * 12 11 10 33 33 H 1.08999 * 109.45800 * 181.38418 * 12 11 10 34 34 H 0.97007 * 119.99764 * 24.83604 * 15 13 12 35 35 H 1.08999 * 110.46904 * 46.67834 * 20 18 16 36 36 H 1.09002 * 110.58297 * 284.13707 * 20 18 16 37 37 H 1.08997 * 111.16616 * 79.94838 * 21 20 18 38 38 H 1.08998 * 111.16829 * 204.21572 * 21 20 18 39 39 H 0.97005 * 126.30415 * 30.75860 * 25 18 16 40 40 H 1.08993 * 109.58760 * 6.58425 * 26 9 7 41 41 H 1.09006 * 109.58653 * 246.15324 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0535 -1.2232 0.2797 9 7 1.3725 -2.3611 -0.3529 10 6 1.8198 -3.6546 0.1816 11 6 2.0756 -4.6097 -0.9885 12 6 0.8201 -4.6900 -1.8601 13 6 0.5018 -3.3049 -2.4279 14 1 1.3501 -2.9465 -3.0110 15 7 -0.6817 -3.3888 -3.2872 16 6 -0.8697 -2.4814 -4.2658 17 8 -0.0588 -1.5957 -4.4353 18 6 -2.0869 -2.5681 -5.1501 19 1 -2.2887 -3.6131 -5.3854 20 6 -3.2983 -1.9679 -4.4114 21 6 -4.3655 -1.7644 -5.5255 22 16 -3.3036 -1.2247 -6.9208 23 8 -3.6016 -1.9507 -8.1055 24 8 -3.1419 0.1871 -6.9287 25 7 -1.8375 -1.8286 -6.3965 26 6 0.2283 -2.3350 -1.2741 27 1 -0.4851 0.8400 -0.0004 28 1 2.7403 -3.5169 0.7489 29 1 1.0474 -4.0690 0.8295 30 1 2.9094 -4.2394 -1.5849 31 1 2.3156 -5.6008 -0.6034 32 1 -0.0190 -5.0369 -1.2571 33 1 0.9911 -5.3879 -2.6797 34 1 -1.3301 -4.0976 -3.1518 35 1 -3.0334 -1.0126 -3.9583 36 1 -3.6660 -2.6594 -3.6532 37 1 -4.8752 -2.6994 -5.7577 38 1 -5.0786 -0.9874 -5.2503 39 1 -0.9793 -1.7124 -6.8335 40 1 0.0987 -1.3267 -1.6673 41 1 -0.6740 -2.6419 -0.7449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009564343.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:04 Heat of formation + Delta-G solvation = -111.018643 kcal Electronic energy + Delta-G solvation = -25614.891463 eV Core-core repulsion = 21849.228126 eV Total energy + Delta-G solvation = -3765.663336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19933 -39.15866 -38.14094 -37.41866 -36.93196 -35.82254 -34.43936 -32.70168 -31.91365 -30.76169 -27.76614 -27.21067 -24.18466 -23.90323 -23.10545 -21.45878 -20.93487 -20.54119 -19.05676 -18.75307 -18.25740 -17.57534 -17.09137 -16.82196 -16.52664 -16.03300 -15.85422 -15.70519 -15.29700 -15.13932 -14.83115 -14.35653 -14.24752 -14.12760 -14.01296 -13.51611 -13.45561 -13.26855 -13.09294 -12.97621 -12.93904 -12.71524 -12.50039 -12.47410 -12.23080 -12.04700 -11.68325 -11.58997 -11.54289 -11.24512 -11.02528 -10.56693 -10.43441 -10.06862 -8.68582 -7.90853 -5.35066 -0.75234 1.38726 1.44754 1.45480 1.49403 1.63786 2.18420 2.47515 2.62379 2.96535 3.25330 3.37122 3.47965 3.68009 3.84375 3.92935 4.00593 4.17672 4.24147 4.33340 4.37781 4.51303 4.65043 4.66344 4.80127 4.85015 4.92197 4.95173 5.11603 5.22756 5.26088 5.36668 5.47669 5.54612 5.62646 5.80874 5.99637 6.36240 6.65169 7.12407 7.34662 7.86069 8.33162 9.13385 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.004102 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.100285 B = 6825.102901 C = 8058.974691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.045 4.045 3 Si 0.954 3.046 4 H -0.298 1.298 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.124 4.124 12 C -0.105 4.105 13 C 0.129 3.871 14 H 0.046 0.954 15 N -0.699 5.699 16 C 0.502 3.498 17 O -0.578 6.578 18 C 0.099 3.901 19 H 0.159 0.841 20 C -0.127 4.127 21 C -0.547 4.547 22 S 2.569 3.431 23 O -0.989 6.989 24 O -1.012 7.012 25 N -1.093 6.093 26 C 0.176 3.824 27 H 0.247 0.753 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.420 0.580 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.192 0.808 38 H 0.170 0.830 39 H 0.433 0.567 40 H 0.043 0.957 41 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 -14.619 -8.579 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.783 3.217 4 H -0.226 1.226 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.163 4.163 12 C -0.143 4.143 13 C 0.022 3.978 14 H 0.064 0.936 15 N -0.352 5.352 16 C 0.287 3.713 17 O -0.456 6.456 18 C -0.012 4.012 19 H 0.176 0.824 20 C -0.166 4.166 21 C -0.682 4.682 22 S 2.668 3.332 23 O -0.978 6.978 24 O -1.002 7.002 25 N -0.858 5.858 26 C 0.049 3.951 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.258 0.742 35 H 0.094 0.906 36 H 0.180 0.820 37 H 0.209 0.791 38 H 0.187 0.813 39 H 0.273 0.727 40 H 0.061 0.939 41 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -10.562 -13.346 -9.535 19.509 hybrid contribution 0.845 1.199 0.550 1.566 sum -9.717 -12.148 -8.986 17.965 Atomic orbital electron populations 1.70128 1.06387 1.25528 1.55155 1.25661 0.96040 1.01133 1.01277 0.85457 0.78760 0.80428 0.77034 1.22582 1.21640 1.18708 1.19480 0.92999 0.86372 1.40656 0.91731 1.44254 1.36182 1.02547 1.50509 1.21177 0.97489 0.85605 0.94689 1.21909 0.97239 1.00041 0.97101 1.21635 0.99005 0.93856 0.99833 1.21503 0.87207 0.97988 0.91058 0.93578 1.45824 1.25885 1.31193 1.32321 1.21123 0.87724 0.81164 0.81278 1.90775 1.47461 1.35902 1.71479 1.22014 0.93284 1.01325 0.84612 0.82352 1.22830 0.89722 1.05390 0.98705 1.30660 1.09759 1.16363 1.11372 1.06238 0.76512 0.73448 0.76996 1.93583 1.84043 1.73468 1.46739 1.93583 1.85078 1.33618 1.87893 1.55036 1.26046 1.70939 1.33826 1.20844 0.88179 0.97620 0.88429 0.94359 0.93094 0.95700 0.93458 0.88504 0.90099 0.89455 0.74211 0.90580 0.82017 0.79082 0.81265 0.72715 0.93865 0.97405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 11.19 21.65 0.24 -55.76 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.95 47.51 29.59 68.60 2.03 49.54 16 4 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.98 9.58 84.03 0.81 -14.17 16 8 H 0.06 3.58 7.89 -2.91 -0.02 3.55 16 9 N -0.61 -30.45 2.99 -699.11 -2.09 -32.54 16 10 C 0.14 5.22 6.52 86.36 0.56 5.78 16 11 C -0.12 -3.56 6.08 30.67 0.19 -3.38 16 12 C -0.11 -2.69 5.35 30.62 0.16 -2.52 16 13 C 0.13 4.51 2.60 45.07 0.12 4.63 16 14 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 15 N -0.70 -17.79 5.08 -442.16 -2.25 -20.04 16 16 C 0.50 14.75 7.01 87.66 0.61 15.36 16 17 O -0.58 -24.86 16.09 -3.03 -0.05 -24.91 16 18 C 0.10 1.75 3.41 44.50 0.15 1.90 16 19 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 20 C -0.13 -1.67 6.09 31.85 0.19 -1.48 16 21 C -0.55 -4.51 7.51 72.88 0.55 -3.96 16 22 S 2.57 53.11 6.50 -56.49 -0.37 52.74 16 23 O -0.99 -25.09 18.13 -127.77 -2.32 -27.41 16 24 O -1.01 -32.22 18.14 -127.77 -2.32 -34.54 16 25 N -1.09 -24.43 6.31 -170.00 -1.07 -25.50 16 26 C 0.18 8.26 4.89 86.36 0.42 8.69 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.05 1.97 7.93 -2.38 -0.02 1.95 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.42 6.17 8.60 -92.70 -0.80 5.37 16 35 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.16 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.19 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.43 10.61 8.76 -93.01 -0.81 9.80 16 40 H 0.04 2.48 6.03 -2.39 -0.01 2.47 16 41 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -93.41 343.92 -4.56 -97.97 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.55 Total: 11.80 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 4.18 Total: 8.64 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.17 Total: -133.84 kcal Atomic # 8 Polarization: -82.17 SS G_CDS: -4.68 Total: -86.85 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.37 Total: 52.74 kcal Total: -93.41 -4.56 -97.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009564343.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.051 kcal (2) G-P(sol) polarization free energy of solvation -93.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds