Wall clock time and date at job start Fri Apr 10 2020 14:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46683 * 299.99874 * 3 2 1 6 6 H 1.48497 * 109.47098 * 59.99776 * 3 2 1 7 7 C 1.38815 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.47746 * 125.82137 * 346.93823 * 9 7 2 11 11 C 1.54907 * 104.84222 * 204.25131 * 10 9 7 12 12 C 1.55161 * 101.58195 * 322.90857 * 11 10 9 13 13 C 1.47015 * 125.64815 * 166.94231 * 9 7 2 14 14 H 1.09002 * 109.88400 * 59.32656 * 13 9 7 15 15 C 1.52998 * 109.88456 * 298.31045 * 13 9 7 16 16 N 1.46503 * 109.47139 * 176.58356 * 15 13 9 17 17 C 1.34778 * 119.99973 * 174.91258 * 16 15 13 18 18 O 1.21283 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99903 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.30038 * 318.23129 * 19 17 16 21 21 C 1.54321 * 109.34295 * 78.09361 * 19 17 16 22 22 C 1.55604 * 104.19005 * 165.59107 * 21 19 17 23 23 S 1.83453 * 100.72576 * 321.92229 * 22 21 19 24 24 O 1.42108 * 111.24650 * 270.72795 * 23 22 21 25 25 O 1.42096 * 111.35786 * 131.51085 * 23 22 21 26 26 N 1.47066 * 109.35477 * 198.54829 * 19 17 16 27 27 H 0.96997 * 119.99558 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.43389 * 85.37471 * 10 9 7 29 29 H 1.09001 * 110.38625 * 323.11187 * 10 9 7 30 30 H 1.09000 * 111.00418 * 204.83284 * 11 10 9 31 31 H 1.09001 * 111.03332 * 80.99879 * 11 10 9 32 32 H 1.08996 * 110.72000 * 277.13853 * 12 11 10 33 33 H 1.08998 * 110.86915 * 153.93518 * 12 11 10 34 34 H 1.09004 * 109.46988 * 56.59123 * 15 13 9 35 35 H 1.09001 * 109.47156 * 296.58618 * 15 13 9 36 36 H 0.97001 * 120.00313 * 354.91882 * 16 15 13 37 37 H 1.08999 * 110.65097 * 46.85337 * 21 19 17 38 38 H 1.09004 * 110.38210 * 284.19125 * 21 19 17 39 39 H 1.09010 * 111.16560 * 204.05835 * 22 21 19 40 40 H 1.09000 * 111.20686 * 79.80943 * 22 21 19 41 41 H 0.96998 * 126.30433 * 30.83519 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1175 -2.5534 0.2708 11 6 -0.2642 -4.0150 0.7623 12 6 0.7710 -4.7493 -0.1303 13 6 1.9052 -3.7120 -0.2689 14 1 2.6931 -3.9257 0.4534 15 6 2.4757 -3.7514 -1.6879 16 7 3.1226 -5.0455 -1.9185 17 6 3.6090 -5.3479 -3.1385 18 8 3.5116 -4.5485 -4.0454 19 6 4.2738 -6.6792 -3.3758 20 1 4.9133 -6.9191 -2.5264 21 6 3.1931 -7.7698 -3.5313 22 6 3.9594 -8.9834 -4.1321 23 16 5.1065 -8.1284 -5.2804 24 8 4.5214 -7.9636 -6.5649 25 8 6.4398 -8.5934 -5.1216 26 7 5.0916 -6.6051 -4.5959 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6953 -2.3998 -0.6406 29 1 -0.4408 -1.8582 1.0456 30 1 -1.2718 -4.3890 0.5806 31 1 -0.0020 -4.1014 1.8167 32 1 0.3423 -4.9844 -1.1045 33 1 1.1330 -5.6537 0.3586 34 1 3.2080 -2.9528 -1.8074 35 1 1.6688 -3.6151 -2.4079 36 1 3.2008 -5.6848 -1.1931 37 1 2.4087 -7.4393 -4.2122 38 1 2.7718 -8.0281 -2.5597 39 1 3.2841 -9.6472 -4.6722 40 1 4.5063 -9.5255 -3.3606 41 1 5.5428 -5.8175 -4.9379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028326216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:49 Heat of formation + Delta-G solvation = -73.572337 kcal Electronic energy + Delta-G solvation = -24955.148900 eV Core-core repulsion = 21191.109357 eV Total energy + Delta-G solvation = -3764.039543 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.124 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.08344 -37.87808 -37.32894 -36.65011 -36.13187 -34.45243 -32.56053 -32.10603 -29.91102 -29.04259 -27.11392 -24.90004 -23.95315 -22.90626 -20.68267 -20.22897 -19.90989 -19.57853 -18.26525 -17.59944 -16.95983 -16.48672 -16.04107 -15.88550 -15.26425 -15.13345 -14.81794 -14.51959 -14.09557 -13.86574 -13.83805 -13.63393 -13.16130 -12.70071 -12.41847 -12.29683 -12.24901 -12.14789 -11.97766 -11.91878 -11.81032 -11.41062 -11.00961 -10.98430 -10.85778 -10.35093 -10.24813 -10.12480 -9.99651 -9.91302 -9.78134 -9.56121 -8.84262 -8.66233 -6.92755 -5.82743 -3.19662 -0.11900 2.17919 2.54440 3.13229 3.25049 3.35849 3.42467 3.44094 3.58316 3.88774 4.04451 4.36746 4.43031 4.53176 4.79651 4.90237 4.99728 5.21333 5.26056 5.30109 5.30777 5.41988 5.54003 5.71424 5.94540 6.03022 6.13646 6.36344 6.43314 6.48331 6.58785 6.69563 6.79919 6.94589 7.44937 7.52334 7.57297 7.73002 8.17538 8.24195 9.10180 9.71162 10.37393 11.28871 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.002959 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.760919 B = 9459.109241 C =10302.856095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.718 5.718 17 C 0.507 3.493 18 O -0.523 6.523 19 C 0.094 3.906 20 H 0.107 0.893 21 C -0.119 4.119 22 C -0.596 4.596 23 S 2.579 3.421 24 O -0.954 6.954 25 O -0.957 6.957 26 N -1.082 6.082 27 H 0.254 0.746 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -20.217 -2.392 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.018 4.018 16 N -0.369 5.369 17 C 0.289 3.711 18 O -0.398 6.398 19 C -0.019 4.019 20 H 0.125 0.875 21 C -0.159 4.159 22 C -0.726 4.726 23 S 2.673 3.327 24 O -0.943 6.943 25 O -0.947 6.947 26 N -0.850 5.850 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.529 -19.716 -3.842 20.834 hybrid contribution 0.216 1.024 0.712 1.266 sum 5.745 -18.692 -3.130 19.804 Atomic orbital electron populations 1.69935 1.05032 1.25271 1.55860 1.24898 0.95689 0.97904 1.01340 0.86066 0.78904 0.83608 0.77304 1.20370 1.21565 1.21664 1.19027 0.90420 0.82143 1.44730 0.90523 1.44572 1.05461 1.00622 1.80664 1.21546 0.84543 0.90429 0.98946 1.23000 0.97433 0.99535 0.98745 1.22612 0.97061 0.96927 0.99823 1.21128 0.94404 0.88146 0.92026 0.94468 1.22337 0.97135 0.82524 0.99803 1.46159 1.59335 1.20325 1.11119 1.20239 0.79515 0.88014 0.83368 1.90763 1.56434 1.49809 1.42773 1.21717 0.93540 0.95843 0.90753 0.87508 1.22691 0.97373 0.89795 1.05996 1.30850 1.16096 1.08607 1.17089 1.06131 0.76017 0.75374 0.75193 1.93646 1.78986 1.84105 1.37597 1.93637 1.34219 1.80276 1.86540 1.54971 1.64325 1.29286 1.36417 0.93592 0.95691 0.90601 0.92313 0.92262 0.91830 0.92361 0.91324 0.91400 0.76962 0.87819 0.86164 0.83609 0.83635 0.71861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.00 10.54 55.49 0.58 -25.41 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.22 9.75 -15.06 -0.15 -6.36 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -13.90 3.14 -162.32 -0.51 -14.41 16 10 C 0.17 3.86 5.46 -2.35 -0.01 3.85 16 11 C -0.15 -2.51 7.09 -24.58 -0.17 -2.69 16 12 C -0.13 -1.86 6.14 -24.89 -0.15 -2.01 16 13 C 0.15 2.72 3.20 -66.96 -0.21 2.51 16 14 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 15 C 0.11 1.86 5.08 -4.04 -0.02 1.84 16 16 N -0.72 -8.74 5.34 -60.29 -0.32 -9.06 16 17 C 0.51 6.50 7.07 -10.99 -0.08 6.42 16 18 O -0.52 -9.34 16.37 5.55 0.09 -9.25 16 19 C 0.09 0.77 3.42 -68.09 -0.23 0.53 16 20 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 21 C -0.12 -0.64 6.10 -24.65 -0.15 -0.80 16 22 C -0.60 -2.47 7.51 38.54 0.29 -2.18 16 23 S 2.58 22.80 6.49 -107.50 -0.70 22.10 16 24 O -0.95 -12.42 18.14 -57.43 -1.04 -13.46 16 25 O -0.96 -11.32 18.13 -57.43 -1.04 -12.36 16 26 N -1.08 -10.45 6.31 -4.97 -0.03 -10.48 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.08 1.94 6.82 -51.93 -0.35 1.59 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.92 7.80 -51.93 -0.40 0.51 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.39 7.89 -51.93 -0.41 0.98 16 35 H 0.07 1.34 8.06 -51.93 -0.42 0.93 16 36 H 0.40 3.34 8.36 -40.82 -0.34 3.00 16 37 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.15 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.15 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.44 4.50 8.72 -40.34 -0.35 4.15 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -37.66 346.76 -9.80 -47.46 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.05 Total: 2.01 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -0.99 Total: 0.99 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.28 Total: -59.36 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.99 Total: -35.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 22.80 SS G_CDS: -0.70 Total: 22.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.66 -9.80 -47.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028326216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.111 kcal (2) G-P(sol) polarization free energy of solvation -37.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds