Wall clock time and date at job start Fri Apr 10 2020 14:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46683 * 299.99874 * 3 2 1 6 6 H 1.48497 * 109.47098 * 59.99776 * 3 2 1 7 7 C 1.38815 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.47746 * 125.82137 * 346.93823 * 9 7 2 11 11 C 1.54907 * 104.84222 * 204.25131 * 10 9 7 12 12 C 1.55161 * 101.58195 * 322.90857 * 11 10 9 13 13 C 1.47015 * 125.64815 * 166.94231 * 9 7 2 14 14 H 1.09002 * 109.88400 * 59.32656 * 13 9 7 15 15 C 1.52998 * 109.88456 * 298.31045 * 13 9 7 16 16 N 1.46503 * 109.47139 * 176.58356 * 15 13 9 17 17 C 1.34778 * 119.99973 * 174.91258 * 16 15 13 18 18 O 1.21283 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99903 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.30038 * 318.23129 * 19 17 16 21 21 C 1.54321 * 109.34295 * 78.09361 * 19 17 16 22 22 C 1.55604 * 104.19005 * 165.59107 * 21 19 17 23 23 S 1.83453 * 100.72576 * 321.92229 * 22 21 19 24 24 O 1.42108 * 111.24650 * 270.72795 * 23 22 21 25 25 O 1.42096 * 111.35786 * 131.51085 * 23 22 21 26 26 N 1.47066 * 109.35477 * 198.54829 * 19 17 16 27 27 H 0.96997 * 119.99558 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.43389 * 85.37471 * 10 9 7 29 29 H 1.09001 * 110.38625 * 323.11187 * 10 9 7 30 30 H 1.09000 * 111.00418 * 204.83284 * 11 10 9 31 31 H 1.09001 * 111.03332 * 80.99879 * 11 10 9 32 32 H 1.08996 * 110.72000 * 277.13853 * 12 11 10 33 33 H 1.08998 * 110.86915 * 153.93518 * 12 11 10 34 34 H 1.09004 * 109.46988 * 56.59123 * 15 13 9 35 35 H 1.09001 * 109.47156 * 296.58618 * 15 13 9 36 36 H 0.97001 * 120.00313 * 354.91882 * 16 15 13 37 37 H 1.08999 * 110.65097 * 46.85337 * 21 19 17 38 38 H 1.09004 * 110.38210 * 284.19125 * 21 19 17 39 39 H 1.09010 * 111.16560 * 204.05835 * 22 21 19 40 40 H 1.09000 * 111.20686 * 79.80943 * 22 21 19 41 41 H 0.96998 * 126.30433 * 30.83519 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1175 -2.5534 0.2708 11 6 -0.2642 -4.0150 0.7623 12 6 0.7710 -4.7493 -0.1303 13 6 1.9052 -3.7120 -0.2689 14 1 2.6931 -3.9257 0.4534 15 6 2.4757 -3.7514 -1.6879 16 7 3.1226 -5.0455 -1.9185 17 6 3.6090 -5.3479 -3.1385 18 8 3.5116 -4.5485 -4.0454 19 6 4.2738 -6.6792 -3.3758 20 1 4.9133 -6.9191 -2.5264 21 6 3.1931 -7.7698 -3.5313 22 6 3.9594 -8.9834 -4.1321 23 16 5.1065 -8.1284 -5.2804 24 8 4.5214 -7.9636 -6.5649 25 8 6.4398 -8.5934 -5.1216 26 7 5.0916 -6.6051 -4.5959 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6953 -2.3998 -0.6406 29 1 -0.4408 -1.8582 1.0456 30 1 -1.2718 -4.3890 0.5806 31 1 -0.0020 -4.1014 1.8167 32 1 0.3423 -4.9844 -1.1045 33 1 1.1330 -5.6537 0.3586 34 1 3.2080 -2.9528 -1.8074 35 1 1.6688 -3.6151 -2.4079 36 1 3.2008 -5.6848 -1.1931 37 1 2.4087 -7.4393 -4.2122 38 1 2.7718 -8.0281 -2.5597 39 1 3.2841 -9.6472 -4.6722 40 1 4.5063 -9.5255 -3.3606 41 1 5.5428 -5.8175 -4.9379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028326216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:49 Heat of formation + Delta-G solvation = -107.152424 kcal Electronic energy + Delta-G solvation = -24956.605042 eV Core-core repulsion = 21191.109357 eV Total energy + Delta-G solvation = -3765.495684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11816 -39.33440 -38.10942 -37.45961 -36.90648 -35.78010 -34.39351 -32.66065 -31.46994 -30.58675 -28.01470 -26.61728 -25.30586 -23.60617 -22.03360 -21.48900 -21.09547 -20.53993 -19.22002 -18.60276 -18.24127 -17.51719 -17.24885 -16.72752 -16.60659 -16.20264 -16.06123 -15.64420 -15.61287 -14.92833 -14.82404 -14.27175 -14.17127 -13.94595 -13.63944 -13.52501 -13.31341 -13.23077 -13.06352 -12.96622 -12.95632 -12.85561 -12.68344 -12.45676 -11.99101 -11.85296 -11.68600 -11.50464 -11.44769 -11.34638 -11.11416 -10.69797 -10.44776 -10.06757 -8.85936 -7.88529 -5.25162 -0.72268 1.42828 1.44565 1.45433 1.53988 1.64299 2.14649 2.48836 2.67391 2.98496 3.31426 3.40031 3.49482 3.69125 3.84486 3.96012 4.00127 4.03541 4.28899 4.34163 4.41412 4.49994 4.58691 4.69299 4.77846 4.85891 4.95162 5.01166 5.05508 5.19874 5.26085 5.38806 5.49484 5.60898 5.69624 5.80740 5.99417 6.23760 6.60648 7.09079 7.27722 7.77292 8.42280 9.22104 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.002959 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.760919 B = 9459.109241 C =10302.856095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.289 1.289 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.613 5.613 10 C 0.170 3.830 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.146 3.854 14 H 0.056 0.944 15 C 0.127 3.873 16 N -0.698 5.698 17 C 0.504 3.496 18 O -0.583 6.583 19 C 0.095 3.905 20 H 0.152 0.848 21 C -0.122 4.122 22 C -0.545 4.545 23 S 2.565 3.435 24 O -1.010 7.010 25 O -0.996 6.996 26 N -1.096 6.096 27 H 0.246 0.754 28 H -0.011 1.011 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.422 0.578 37 H 0.090 0.910 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.187 0.813 41 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -24.287 -0.273 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.338 5.338 10 C 0.045 3.955 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.039 3.961 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.351 5.351 17 C 0.289 3.711 18 O -0.462 6.462 19 C -0.016 4.016 20 H 0.170 0.830 21 C -0.162 4.162 22 C -0.680 4.680 23 S 2.665 3.335 24 O -1.000 7.000 25 O -0.985 6.985 26 N -0.861 5.861 27 H 0.056 0.944 28 H 0.007 0.993 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.260 0.740 37 H 0.109 0.891 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.205 0.795 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 6.001 -23.845 -1.722 24.649 hybrid contribution 0.083 2.238 0.089 2.241 sum 6.084 -21.607 -1.633 22.507 Atomic orbital electron populations 1.70139 1.06233 1.25177 1.57878 1.25630 0.96477 1.00897 1.02484 0.85157 0.78365 0.80108 0.76625 1.19141 1.22491 1.21584 1.19336 0.90751 0.83671 1.42701 0.90436 1.44847 1.05949 1.01958 1.81012 1.21361 0.83931 0.93950 0.96271 1.22860 0.99724 0.95067 0.99594 1.22624 0.94657 0.97380 1.00175 1.21389 0.96145 0.86509 0.92030 0.92677 1.21694 0.95327 0.84177 0.98764 1.45784 1.58501 1.18747 1.12108 1.21140 0.78362 0.89271 0.82313 1.90750 1.58526 1.52199 1.44677 1.22120 0.94513 0.93397 0.91612 0.83034 1.22933 0.96122 0.88775 1.08369 1.30650 1.13959 1.07893 1.15542 1.06359 0.76262 0.75398 0.75507 1.93577 1.79619 1.84968 1.41821 1.93584 1.37285 1.80536 1.87132 1.55080 1.64459 1.29297 1.37253 0.94425 0.99341 0.94558 0.90007 0.91144 0.91396 0.86817 0.95213 0.94584 0.73976 0.89136 0.81439 0.80811 0.79513 0.72858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.37 10.54 21.65 0.23 -56.14 16 2 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 3 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.24 -12.74 9.75 84.03 0.82 -11.92 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.61 -29.24 3.14 -667.46 -2.09 -31.33 16 10 C 0.17 7.88 5.46 86.79 0.47 8.36 16 11 C -0.13 -4.16 7.09 31.99 0.23 -3.93 16 12 C -0.11 -2.76 6.14 31.79 0.20 -2.56 16 13 C 0.15 4.96 3.20 45.34 0.15 5.10 16 14 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 15 C 0.13 4.36 5.08 86.38 0.44 4.80 16 16 N -0.70 -14.93 5.34 -463.06 -2.47 -17.40 16 17 C 0.50 12.02 7.07 87.65 0.62 12.63 16 18 O -0.58 -21.29 16.37 -3.04 -0.05 -21.34 16 19 C 0.10 1.20 3.42 44.58 0.15 1.35 16 20 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 21 C -0.12 -0.64 6.10 31.94 0.19 -0.45 16 22 C -0.55 -1.38 7.51 72.88 0.55 -0.83 16 23 S 2.56 42.06 6.49 -56.49 -0.37 41.69 16 24 O -1.01 -26.94 18.14 -127.76 -2.32 -29.26 16 25 O -1.00 -22.82 18.13 -127.76 -2.32 -25.14 16 26 N -1.10 -20.12 6.31 -169.64 -1.07 -21.19 16 27 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 28 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 29 H 0.04 1.94 6.82 -2.39 -0.02 1.92 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.68 7.80 -2.39 -0.02 1.66 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.03 1.24 7.89 -2.39 -0.02 1.22 16 35 H 0.04 1.46 8.06 -2.39 -0.02 1.44 16 36 H 0.42 4.74 8.36 -92.71 -0.78 3.97 16 37 H 0.09 0.82 8.11 -2.39 -0.02 0.80 16 38 H 0.17 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.17 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.19 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.43 9.25 8.72 -93.01 -0.81 8.43 16 Total: -1.00 -92.73 346.76 -4.68 -97.41 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -0.53 Total: 5.19 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 4.28 Total: 9.56 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -5.41 Total: -126.06 kcal Atomic # 8 Polarization: -71.05 SS G_CDS: -4.68 Total: -75.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 42.06 SS G_CDS: -0.37 Total: 41.69 kcal Total: -92.73 -4.68 -97.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028326216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.744 kcal (2) G-P(sol) polarization free energy of solvation -92.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds