Wall clock time and date at job start Fri Apr 10 2020 14:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48498 * 109.47054 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.46896 * 150.00171 * 3 2 1 7 7 C 1.38809 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99602 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64466 * 14.73237 * 9 7 2 11 11 C 1.54906 * 104.83182 * 155.89425 * 10 9 7 12 12 C 1.55159 * 101.58246 * 37.00786 * 11 10 9 13 13 C 1.47012 * 125.64991 * 194.75846 * 9 7 2 14 14 H 1.09001 * 110.00975 * 300.52483 * 13 9 7 15 15 C 1.53000 * 109.88463 * 61.62054 * 13 9 7 16 16 N 1.46497 * 109.47603 * 182.40016 * 15 13 9 17 17 C 1.34773 * 120.00320 * 185.13467 * 16 15 13 18 18 O 1.21281 * 120.00104 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00102 * 179.72199 * 17 16 15 20 20 H 1.09002 * 109.34837 * 39.71411 * 19 17 16 21 21 C 1.54065 * 109.35651 * 280.00237 * 19 17 16 22 22 C 1.55610 * 104.29293 * 194.61868 * 21 19 17 23 23 S 1.83445 * 100.72571 * 37.91805 * 22 21 19 24 24 O 1.42102 * 111.25171 * 89.27108 * 23 22 21 25 25 O 1.42092 * 111.24867 * 228.37516 * 23 22 21 26 26 N 1.47067 * 109.35627 * 159.36124 * 19 17 16 27 27 H 0.96997 * 120.00510 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.37241 * 37.05898 * 10 9 7 29 29 H 1.08999 * 110.36713 * 274.73347 * 10 9 7 30 30 H 1.09006 * 111.00540 * 278.93541 * 11 10 9 31 31 H 1.09003 * 111.00754 * 155.07805 * 11 10 9 32 32 H 1.08997 * 110.72495 * 206.13350 * 12 11 10 33 33 H 1.08999 * 110.87348 * 82.93203 * 12 11 10 34 34 H 1.08997 * 109.47247 * 62.39815 * 15 13 9 35 35 H 1.09004 * 109.46837 * 302.39691 * 15 13 9 36 36 H 0.97002 * 119.99729 * 5.13312 * 16 15 13 37 37 H 1.08995 * 110.46500 * 313.31946 * 21 19 17 38 38 H 1.08997 * 110.46744 * 75.91784 * 21 19 17 39 39 H 1.09001 * 111.16261 * 155.78250 * 22 21 19 40 40 H 1.08997 * 111.16861 * 280.04852 * 22 21 19 41 41 H 0.96998 * 126.30151 * 329.17013 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 -0.1071 -2.5527 -0.3069 11 6 -0.2458 -4.0216 -0.7788 12 6 0.7643 -4.7443 0.1512 13 6 1.8977 -3.7079 0.3021 14 1 2.7031 -3.9350 -0.3965 15 6 2.4320 -3.7261 1.7356 16 7 3.0509 -5.0254 2.0097 17 6 3.5006 -5.3098 3.2479 18 8 3.3935 -4.4900 4.1352 19 6 4.1315 -6.6487 3.5314 20 1 4.7583 -6.9384 2.6879 21 6 3.0254 -7.7024 3.7311 22 6 3.7596 -8.9122 4.3781 23 16 4.9352 -8.0447 5.4873 24 8 4.3606 -7.8117 6.7659 25 8 6.2527 -8.5571 5.3434 26 7 4.9607 -6.5504 4.7420 27 1 -0.4851 0.8400 0.0004 28 1 -0.4067 -1.8692 -1.1014 29 1 -0.7074 -2.3831 0.5869 30 1 0.0433 -4.1249 -1.8248 31 1 -1.2587 -4.3901 -0.6168 32 1 1.1352 -5.6561 -0.3167 33 1 0.3124 -4.9650 1.1183 34 1 1.6099 -3.5612 2.4319 35 1 3.1746 -2.9373 1.8567 36 1 3.1369 -5.6810 1.3000 37 1 2.2536 -7.3225 4.4004 38 1 2.5930 -7.9875 2.7720 39 1 3.0680 -9.5341 4.9465 40 1 4.2877 -9.4997 3.6270 41 1 5.4355 -5.7628 5.0505 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028326219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:54 Heat of formation + Delta-G solvation = -73.968865 kcal Electronic energy + Delta-G solvation = -24960.565867 eV Core-core repulsion = 21196.509130 eV Total energy + Delta-G solvation = -3764.056737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.124 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.08700 -37.89286 -37.32751 -36.65582 -36.13101 -34.45094 -32.55885 -32.11287 -29.90348 -29.05428 -27.12359 -24.89981 -23.95664 -22.89020 -20.68985 -20.22467 -19.90659 -19.57712 -18.26274 -17.60050 -16.96041 -16.49156 -16.03512 -15.88132 -15.26176 -15.12604 -14.81268 -14.52587 -14.09144 -13.87177 -13.83489 -13.63308 -13.16603 -12.69547 -12.41594 -12.29452 -12.24685 -12.16681 -11.96681 -11.92013 -11.81269 -11.40309 -11.00770 -10.98105 -10.83446 -10.34766 -10.25087 -10.14408 -10.00745 -9.91453 -9.79570 -9.55844 -8.83714 -8.64532 -6.91464 -5.83230 -3.20513 -0.11527 2.17510 2.55251 3.13438 3.25243 3.36006 3.42366 3.43693 3.58564 3.89269 4.05512 4.36939 4.43236 4.53574 4.79836 4.90340 5.00293 5.21612 5.26285 5.30515 5.31333 5.41972 5.54153 5.71699 5.94951 6.03440 6.13881 6.36518 6.43856 6.48439 6.58872 6.70144 6.79337 6.94934 7.44202 7.53374 7.57814 7.72655 8.18040 8.24626 9.10625 9.71249 10.37753 11.28636 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.022372 B = 0.002966 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.265925 B = 9438.533785 C =10282.594002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.718 5.718 17 C 0.507 3.493 18 O -0.522 6.522 19 C 0.094 3.906 20 H 0.106 0.894 21 C -0.119 4.119 22 C -0.596 4.596 23 S 2.579 3.421 24 O -0.954 6.954 25 O -0.957 6.957 26 N -1.082 6.082 27 H 0.254 0.746 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -20.157 2.867 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.018 4.018 16 N -0.369 5.369 17 C 0.288 3.712 18 O -0.397 6.397 19 C -0.018 4.018 20 H 0.124 0.876 21 C -0.159 4.159 22 C -0.726 4.726 23 S 2.673 3.327 24 O -0.943 6.943 25 O -0.947 6.947 26 N -0.850 5.850 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.190 -19.622 4.320 20.751 hybrid contribution 0.234 1.009 -0.736 1.271 sum 5.424 -18.613 3.583 19.716 Atomic orbital electron populations 1.69931 1.05048 1.25437 1.55594 1.24924 0.95680 0.97930 1.01174 0.86145 0.78833 0.83338 0.77597 1.21482 1.21538 1.20496 1.18971 0.90387 0.82155 1.45027 0.90642 1.44482 1.06465 1.01002 1.79296 1.21461 0.84778 0.90182 0.98871 1.23006 0.97572 0.99614 0.98551 1.22611 0.97158 0.96950 0.99717 1.21135 0.94550 0.88207 0.91793 0.94466 1.22331 0.97631 0.82367 0.99441 1.46163 1.60845 1.19414 1.10507 1.20238 0.79365 0.88260 0.83293 1.90765 1.55378 1.48804 1.44804 1.21661 0.93357 0.95893 0.90909 0.87591 1.22642 0.97327 0.90308 1.05593 1.30850 1.16524 1.08702 1.16567 1.06116 0.76112 0.75427 0.75023 1.93646 1.79296 1.83255 1.38135 1.93636 1.35351 1.79114 1.86575 1.54969 1.62901 1.30660 1.36452 0.93524 0.90968 0.95553 0.92273 0.92313 0.92390 0.91804 0.91367 0.91342 0.76964 0.87842 0.86143 0.83608 0.83638 0.71879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.99 10.58 55.49 0.59 -25.41 16 2 C 0.00 0.01 5.47 -17.43 -0.10 -0.08 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -6.28 9.76 -15.06 -0.15 -6.42 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.59 -13.89 3.13 -162.58 -0.51 -14.40 16 10 C 0.17 3.91 5.41 -2.53 -0.01 3.89 16 11 C -0.15 -2.52 7.08 -24.58 -0.17 -2.69 16 12 C -0.13 -1.86 6.10 -24.89 -0.15 -2.01 16 13 C 0.15 2.73 3.22 -66.96 -0.22 2.51 16 14 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 15 C 0.11 1.87 5.07 -4.04 -0.02 1.85 16 16 N -0.72 -8.77 5.33 -60.30 -0.32 -9.09 16 17 C 0.51 6.51 7.05 -10.99 -0.08 6.44 16 18 O -0.52 -9.36 16.42 5.56 0.09 -9.27 16 19 C 0.09 0.77 3.41 -68.22 -0.23 0.54 16 20 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 21 C -0.12 -0.66 6.09 -24.79 -0.15 -0.81 16 22 C -0.60 -2.51 7.51 38.55 0.29 -2.22 16 23 S 2.58 22.88 6.49 -107.50 -0.70 22.19 16 24 O -0.95 -12.46 18.13 -57.43 -1.04 -13.50 16 25 O -0.96 -11.33 18.14 -57.43 -1.04 -12.37 16 26 N -1.08 -10.44 6.31 -5.08 -0.03 -10.47 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.07 1.85 6.94 -51.93 -0.36 1.49 16 29 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.92 7.81 -51.93 -0.41 0.52 16 34 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.07 1.39 7.92 -51.93 -0.41 0.98 16 36 H 0.40 3.36 8.34 -40.82 -0.34 3.02 16 37 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.15 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.15 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.44 4.48 8.77 -40.34 -0.35 4.13 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -37.64 346.86 -9.81 -47.45 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.06 Total: 2.02 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.99 Total: 1.00 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.27 Total: -59.37 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.99 Total: -35.14 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 22.88 SS G_CDS: -0.70 Total: 22.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.64 -9.81 -47.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028326219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.519 kcal (2) G-P(sol) polarization free energy of solvation -37.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds