Wall clock time and date at job start Fri Apr 10 2020 14:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47312 * 126.68853 * 2 1 4 4 C 1.51579 * 103.59194 * 180.02562 * 3 2 1 5 5 O 1.21230 * 127.16014 * 180.02562 * 4 3 2 6 6 N 1.34774 * 105.68693 * 0.02562 * 4 3 2 7 7 C 1.46494 * 124.17813 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47142 * 90.02712 * 7 6 4 9 9 O 1.21290 * 119.99846 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00426 * 180.27443 * 8 7 6 11 11 C 1.39239 * 120.00570 * 175.43070 * 10 8 7 12 12 C 1.39477 * 119.83614 * 215.01610 * 11 10 8 13 13 C 1.36373 * 120.17006 * 179.71638 * 12 11 10 14 14 C 1.40880 * 119.82631 * 0.57915 * 13 12 11 15 15 C 1.41150 * 120.16389 * 179.67723 * 14 13 12 16 16 H 1.07996 * 119.99589 * 214.80171 * 15 14 13 17 17 C 1.39908 * 119.99877 * 34.79882 * 15 14 13 18 18 N 1.30865 * 120.00091 * 355.55844 * 17 15 14 19 19 Si 1.86804 * 119.99594 * 175.56112 * 17 15 14 20 20 H 1.48499 * 109.47026 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47132 * 120.00182 * 19 17 15 22 22 H 1.48502 * 109.46965 * 239.99837 * 19 17 15 23 23 C 1.40870 * 119.66740 * 359.69618 * 14 13 12 24 24 C 1.36368 * 119.83276 * 359.97438 * 23 14 13 25 25 C 1.33793 * 111.64166 * 0.23263 * 6 4 3 26 26 O 1.21535 * 123.76865 * 179.77094 * 25 6 4 27 27 H 1.08999 * 109.47257 * 89.99915 * 1 2 3 28 28 H 1.09009 * 109.46725 * 209.99341 * 1 2 3 29 29 H 1.08998 * 109.47279 * 329.99147 * 1 2 3 30 30 H 1.09002 * 110.59325 * 61.51279 * 3 2 1 31 31 H 1.09000 * 110.60184 * 298.57011 * 3 2 1 32 32 H 1.08997 * 109.47675 * 330.02423 * 7 6 4 33 33 H 1.09000 * 109.47374 * 210.02695 * 7 6 4 34 34 H 0.97006 * 119.99556 * 355.43441 * 10 8 7 35 35 H 1.07997 * 119.91354 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.08964 * 180.24990 * 13 12 11 37 37 H 0.97003 * 119.99530 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.08156 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.91596 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3452 1.1813 0.0000 4 6 3.7394 0.5867 -0.0007 5 8 4.7920 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0015 7 6 4.6613 -1.7222 -0.0029 8 6 5.0375 -2.0572 1.4174 9 8 4.4486 -1.5346 2.3400 10 7 6.0323 -2.9328 1.6625 11 6 6.4438 -3.1706 2.9712 12 6 7.7891 -3.4217 3.2409 13 6 8.2006 -3.6498 4.5209 14 6 7.2610 -3.6435 5.5706 15 6 7.6780 -3.8855 6.8972 16 1 7.0317 -4.4204 7.5772 17 6 8.9285 -3.4323 7.3310 18 7 9.7473 -2.8612 6.4847 19 14 9.4295 -3.6425 9.1183 20 1 8.3338 -4.3122 9.8640 21 1 10.6590 -4.4717 9.1935 22 1 9.6937 -2.3100 9.7183 23 6 5.9032 -3.3948 5.2895 24 6 5.5079 -3.1617 4.0054 25 6 2.2688 -1.0787 -0.0066 26 8 1.8624 -2.2241 -0.0123 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5140 30 1 2.1840 1.7795 0.8968 31 1 2.1830 1.7804 -0.8961 32 1 5.5237 -1.2973 -0.5166 33 1 4.3422 -2.6285 -0.5176 34 1 6.4617 -3.3973 0.9270 35 1 8.5073 -3.4313 2.4344 36 1 9.2431 -3.8401 4.7287 37 1 10.6141 -2.5467 6.7857 38 1 5.1771 -3.3888 6.0891 39 1 4.4672 -2.9714 3.7883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:49 Heat of formation + Delta-G solvation = -36.157614 kcal Electronic energy + Delta-G solvation = -25703.807965 eV Core-core repulsion = 21805.946895 eV Total energy + Delta-G solvation = -3897.861070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50843 -39.63470 -38.74357 -37.32044 -36.33260 -35.30692 -34.43362 -32.96714 -30.62390 -29.58810 -28.99191 -27.66139 -26.48999 -24.75920 -22.65986 -21.90875 -21.08730 -20.37678 -19.69459 -17.85351 -17.74611 -17.30474 -16.93372 -16.54217 -16.26680 -15.62183 -15.19769 -15.06980 -14.86643 -14.60896 -14.26681 -14.18083 -13.91960 -13.48121 -13.16557 -12.89941 -12.75211 -12.66794 -12.34603 -12.09214 -11.70849 -11.38750 -11.17336 -11.08826 -10.97024 -10.74924 -10.44458 -10.41098 -9.94525 -9.48817 -9.45638 -9.30792 -9.08939 -8.89248 -7.54945 -6.87822 -6.61984 -4.34513 1.48871 1.78187 2.48496 2.67334 2.84254 2.97114 3.08944 3.10394 3.15771 3.29587 3.66783 3.80985 3.98427 4.39787 4.68096 4.69550 4.82666 4.89196 4.91440 5.01709 5.09245 5.28885 5.32630 5.59909 5.65460 6.12536 6.19012 6.43874 6.72148 6.88430 6.89830 7.06213 7.17432 7.19157 7.28988 7.63728 7.70897 7.83109 7.89566 8.06052 8.22062 8.31064 8.59365 8.68227 8.92776 8.99099 10.29133 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.002709 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.561295 B =10333.379855 C =10445.058979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.631 5.631 3 C 0.067 3.933 4 C 0.527 3.473 5 O -0.465 6.465 6 N -0.560 5.560 7 C 0.102 3.898 8 C 0.486 3.514 9 O -0.521 6.521 10 N -0.645 5.645 11 C 0.002 3.998 12 C -0.118 4.118 13 C -0.142 4.142 14 C 0.101 3.899 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.811 5.811 19 Si 0.916 3.084 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.206 4.206 24 C -0.084 4.084 25 C 0.706 3.294 26 O -0.539 6.539 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.133 0.867 37 H 0.277 0.723 38 H 0.096 0.904 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 6.323 -15.562 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.370 5.370 3 C -0.059 4.059 4 C 0.314 3.686 5 O -0.334 6.334 6 N -0.305 5.305 7 C -0.024 4.024 8 C 0.271 3.729 9 O -0.397 6.397 10 N -0.288 5.288 11 C -0.090 4.090 12 C -0.138 4.138 13 C -0.162 4.162 14 C 0.098 3.902 15 C -0.491 4.491 16 H 0.095 0.905 17 C -0.146 4.146 18 N -0.438 5.438 19 Si 0.741 3.259 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.226 4.226 24 C -0.104 4.104 25 C 0.408 3.592 26 O -0.412 6.412 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.231 0.769 35 H 0.110 0.890 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.939 6.487 -14.915 20.176 hybrid contribution 0.594 -0.089 0.465 0.759 sum -11.345 6.399 -14.450 19.454 Atomic orbital electron populations 1.21512 0.74025 1.04012 1.02303 1.47403 1.06676 1.05265 1.77699 1.22482 0.86496 0.90371 1.06537 1.20837 0.91532 0.82003 0.74239 1.90839 1.30892 1.65987 1.45673 1.45819 1.07546 1.08869 1.68259 1.21457 0.89941 0.94149 0.96844 1.20607 0.81569 0.79974 0.90792 1.90709 1.51905 1.51919 1.45204 1.42846 1.36025 1.41553 1.08378 1.17246 0.93152 1.16148 0.82493 1.20308 0.92119 1.04138 0.97260 1.21198 1.01021 1.03811 0.90153 1.17742 0.90665 0.88379 0.93398 1.19540 1.00546 1.32350 0.96634 0.90540 1.25890 0.95604 0.93199 0.99910 1.69769 1.07947 1.30498 1.35607 0.86141 0.79049 0.78710 0.82039 1.18582 1.19977 1.19990 1.20802 0.96756 1.10045 0.94959 1.20388 0.97637 0.99771 0.92559 1.15743 0.80577 0.85388 0.77468 1.90982 1.76764 1.18698 1.54769 0.92033 0.89892 0.90156 0.85849 0.86015 0.85854 0.85830 0.76867 0.88956 0.84958 0.91177 0.88604 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.74 11.17 59.85 0.67 1.41 16 2 N -0.63 -6.02 3.42 -187.94 -0.64 -6.67 16 3 C 0.07 0.51 7.66 -4.32 -0.03 0.48 16 4 C 0.53 6.48 8.32 -10.55 -0.09 6.39 16 5 O -0.46 -7.04 17.76 5.60 0.10 -6.94 16 6 N -0.56 -7.45 2.09 -122.03 -0.26 -7.71 16 7 C 0.10 1.29 6.18 -5.20 -0.03 1.25 16 8 C 0.49 8.68 7.73 -10.99 -0.08 8.60 16 9 O -0.52 -11.63 13.85 5.55 0.08 -11.55 16 10 N -0.64 -11.37 5.30 -9.74 -0.05 -11.42 16 11 C 0.00 0.04 6.31 -83.57 -0.53 -0.49 16 12 C -0.12 -2.72 9.90 -39.79 -0.39 -3.11 16 13 C -0.14 -3.68 8.62 -39.25 -0.34 -4.02 16 14 C 0.10 2.74 5.55 -106.80 -0.59 2.15 16 15 C -0.46 -12.42 9.02 -37.85 -0.34 -12.76 16 16 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 17 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 18 N -0.81 -21.30 10.60 55.55 0.59 -20.71 16 19 Si 0.92 19.21 29.56 -169.99 -5.03 14.18 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.21 -5.33 9.74 -39.26 -0.38 -5.72 16 24 C -0.08 -2.07 8.61 -39.79 -0.34 -2.41 16 25 C 0.71 9.60 8.31 -88.02 -0.73 8.87 16 26 O -0.54 -9.02 17.15 5.33 0.09 -8.92 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.62 8.04 -51.92 -0.42 0.20 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.12 1.24 8.00 -51.93 -0.42 0.83 16 33 H 0.12 1.28 7.85 -51.93 -0.41 0.87 16 34 H 0.40 5.24 8.82 -40.82 -0.36 4.88 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 39 H 0.11 2.63 6.22 -52.49 -0.33 2.30 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -36.54 343.49 -7.59 -44.13 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.33 Total: 8.12 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.31 Total: 2.32 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.36 Total: -46.50 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: 0.27 Total: -27.42 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.54 -7.59 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.969 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds