Wall clock time and date at job start Fri Apr 10 2020 14:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47312 * 126.68853 * 2 1 4 4 C 1.51579 * 103.59194 * 180.02562 * 3 2 1 5 5 O 1.21230 * 127.16014 * 180.02562 * 4 3 2 6 6 N 1.34774 * 105.68693 * 0.02562 * 4 3 2 7 7 C 1.46494 * 124.17813 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47142 * 90.02712 * 7 6 4 9 9 O 1.21290 * 119.99846 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00426 * 180.27443 * 8 7 6 11 11 C 1.39239 * 120.00570 * 175.43070 * 10 8 7 12 12 C 1.39477 * 119.83614 * 215.01610 * 11 10 8 13 13 C 1.36373 * 120.17006 * 179.71638 * 12 11 10 14 14 C 1.40880 * 119.82631 * 0.57915 * 13 12 11 15 15 C 1.41150 * 120.16389 * 179.67723 * 14 13 12 16 16 H 1.07996 * 119.99589 * 214.80171 * 15 14 13 17 17 C 1.39908 * 119.99877 * 34.79882 * 15 14 13 18 18 N 1.30865 * 120.00091 * 355.55844 * 17 15 14 19 19 Si 1.86804 * 119.99594 * 175.56112 * 17 15 14 20 20 H 1.48499 * 109.47026 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47132 * 120.00182 * 19 17 15 22 22 H 1.48502 * 109.46965 * 239.99837 * 19 17 15 23 23 C 1.40870 * 119.66740 * 359.69618 * 14 13 12 24 24 C 1.36368 * 119.83276 * 359.97438 * 23 14 13 25 25 C 1.33793 * 111.64166 * 0.23263 * 6 4 3 26 26 O 1.21535 * 123.76865 * 179.77094 * 25 6 4 27 27 H 1.08999 * 109.47257 * 89.99915 * 1 2 3 28 28 H 1.09009 * 109.46725 * 209.99341 * 1 2 3 29 29 H 1.08998 * 109.47279 * 329.99147 * 1 2 3 30 30 H 1.09002 * 110.59325 * 61.51279 * 3 2 1 31 31 H 1.09000 * 110.60184 * 298.57011 * 3 2 1 32 32 H 1.08997 * 109.47675 * 330.02423 * 7 6 4 33 33 H 1.09000 * 109.47374 * 210.02695 * 7 6 4 34 34 H 0.97006 * 119.99556 * 355.43441 * 10 8 7 35 35 H 1.07997 * 119.91354 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.08964 * 180.24990 * 13 12 11 37 37 H 0.97003 * 119.99530 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.08156 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.91596 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3452 1.1813 0.0000 4 6 3.7394 0.5867 -0.0007 5 8 4.7920 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0015 7 6 4.6613 -1.7222 -0.0029 8 6 5.0375 -2.0572 1.4174 9 8 4.4486 -1.5346 2.3400 10 7 6.0323 -2.9328 1.6625 11 6 6.4438 -3.1706 2.9712 12 6 7.7891 -3.4217 3.2409 13 6 8.2006 -3.6498 4.5209 14 6 7.2610 -3.6435 5.5706 15 6 7.6780 -3.8855 6.8972 16 1 7.0317 -4.4204 7.5772 17 6 8.9285 -3.4323 7.3310 18 7 9.7473 -2.8612 6.4847 19 14 9.4295 -3.6425 9.1183 20 1 8.3338 -4.3122 9.8640 21 1 10.6590 -4.4717 9.1935 22 1 9.6937 -2.3100 9.7183 23 6 5.9032 -3.3948 5.2895 24 6 5.5079 -3.1617 4.0054 25 6 2.2688 -1.0787 -0.0066 26 8 1.8624 -2.2241 -0.0123 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5140 30 1 2.1840 1.7795 0.8968 31 1 2.1830 1.7804 -0.8961 32 1 5.5237 -1.2973 -0.5166 33 1 4.3422 -2.6285 -0.5176 34 1 6.4617 -3.3973 0.9270 35 1 8.5073 -3.4313 2.4344 36 1 9.2431 -3.8401 4.7287 37 1 10.6141 -2.5467 6.7857 38 1 5.1771 -3.3888 6.0891 39 1 4.4672 -2.9714 3.7883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008126507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:48 Heat of formation + Delta-G solvation = -61.824421 kcal Electronic energy + Delta-G solvation = -25704.920961 eV Core-core repulsion = 21805.946895 eV Total energy + Delta-G solvation = -3898.974066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44142 -41.19302 -39.75754 -39.12548 -37.31288 -36.42672 -36.03499 -34.78749 -31.76070 -31.46333 -30.56130 -28.72618 -27.35199 -26.47984 -23.68968 -23.46626 -22.82587 -21.78530 -21.02795 -19.34842 -19.00486 -18.74408 -17.99877 -17.73224 -17.59593 -17.06103 -16.62292 -16.33089 -15.92105 -15.72969 -15.54283 -15.34667 -15.10594 -14.92451 -14.63258 -14.39590 -14.07370 -13.67743 -13.47047 -13.41306 -13.28935 -13.24845 -12.88432 -12.76897 -12.52221 -12.09652 -11.88506 -11.54111 -11.41439 -11.40501 -11.24181 -10.79708 -10.58306 -9.98890 -9.51142 -8.78700 -8.53359 -6.36471 0.56765 0.72029 0.91232 1.09352 1.38402 1.39669 1.53455 1.65044 1.77276 2.00369 2.22567 2.35272 2.77282 2.99632 3.58646 3.64713 3.69238 4.07730 4.13140 4.22599 4.28611 4.35162 4.37097 4.46999 4.68111 4.88539 4.88784 4.95088 5.08306 5.10874 5.28892 5.37849 5.38717 5.65550 5.85385 5.96799 5.99198 6.09202 6.26744 6.34816 6.57560 6.64925 6.93206 6.93690 6.95614 7.24877 8.39746 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.002709 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.561295 B =10333.379855 C =10445.058979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.622 5.622 3 C 0.076 3.924 4 C 0.518 3.482 5 O -0.500 6.500 6 N -0.569 5.569 7 C 0.107 3.893 8 C 0.482 3.518 9 O -0.569 6.569 10 N -0.636 5.636 11 C 0.017 3.983 12 C -0.114 4.114 13 C -0.159 4.159 14 C 0.069 3.931 15 C -0.497 4.497 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.840 5.840 19 Si 0.990 3.010 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.269 1.269 23 C -0.222 4.222 24 C -0.097 4.097 25 C 0.694 3.306 26 O -0.582 6.582 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.145 0.855 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.422 0.578 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.286 0.714 38 H 0.094 0.906 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 7.623 -17.176 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.360 5.360 3 C -0.048 4.048 4 C 0.308 3.692 5 O -0.372 6.372 6 N -0.313 5.313 7 C -0.018 4.018 8 C 0.269 3.731 9 O -0.448 6.448 10 N -0.282 5.282 11 C -0.076 4.076 12 C -0.134 4.134 13 C -0.179 4.179 14 C 0.067 3.933 15 C -0.527 4.527 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.467 5.467 19 Si 0.811 3.189 20 H -0.185 1.185 21 H -0.186 1.186 22 H -0.194 1.194 23 C -0.243 4.243 24 C -0.117 4.117 25 C 0.396 3.604 26 O -0.458 6.458 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.162 0.838 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.261 0.739 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.398 7.807 -16.594 22.137 hybrid contribution 0.622 -0.436 0.820 1.117 sum -11.776 7.371 -15.775 21.020 Atomic orbital electron populations 1.21823 0.71960 1.04704 1.03969 1.47682 1.07777 1.04696 1.75891 1.22749 0.82843 0.89571 1.09634 1.21617 0.92971 0.81649 0.73003 1.90820 1.32595 1.66402 1.47374 1.46022 1.07679 1.09539 1.68067 1.21562 0.91323 0.95817 0.93062 1.21586 0.80193 0.78669 0.92646 1.90687 1.53325 1.53474 1.47333 1.42757 1.36256 1.41984 1.07206 1.17304 0.92663 1.13374 0.84274 1.20575 0.92960 1.02669 0.97214 1.21205 1.00388 1.05073 0.91279 1.18048 0.91356 0.89652 0.94256 1.19749 1.01916 1.34121 0.96945 0.90988 1.26758 0.94970 0.92277 1.04461 1.69823 1.08472 1.30827 1.37612 0.85037 0.78871 0.78879 0.76128 1.18468 1.18555 1.19395 1.20907 0.96661 1.10948 0.95734 1.20465 0.97926 1.00380 0.92897 1.16047 0.80975 0.85776 0.77578 1.90944 1.77373 1.20495 1.57026 0.89886 0.91780 0.86879 0.83757 0.81409 0.82824 0.83263 0.73947 0.85291 0.86069 0.90381 0.88807 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.08 11.17 127.77 1.43 2.51 16 2 N -0.62 -10.30 3.42 -866.95 -2.96 -13.26 16 3 C 0.08 0.90 7.66 85.76 0.66 1.56 16 4 C 0.52 11.72 8.32 87.94 0.73 12.45 16 5 O -0.50 -14.44 17.76 -2.87 -0.05 -14.50 16 6 N -0.57 -14.24 2.09 -777.24 -1.63 -15.86 16 7 C 0.11 2.52 6.18 85.63 0.53 3.05 16 8 C 0.48 16.78 7.73 87.66 0.68 17.45 16 9 O -0.57 -25.56 13.85 -3.06 -0.04 -25.60 16 10 N -0.64 -21.51 5.30 -303.11 -1.61 -23.12 16 11 C 0.02 0.78 6.31 38.56 0.24 1.02 16 12 C -0.11 -5.19 9.90 22.13 0.22 -4.97 16 13 C -0.16 -8.46 8.62 22.48 0.19 -8.27 16 14 C 0.07 3.92 5.55 -21.27 -0.12 3.80 16 15 C -0.50 -27.86 9.02 23.39 0.21 -27.65 16 16 H 0.07 3.93 7.85 -2.91 -0.02 3.90 16 17 C 0.03 1.42 5.42 85.24 0.46 1.89 16 18 N -0.84 -44.82 10.60 21.82 0.23 -44.59 16 19 Si 0.99 39.72 29.56 68.60 2.03 41.75 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 23 C -0.22 -12.06 9.74 22.48 0.22 -11.84 16 24 C -0.10 -4.89 8.61 22.13 0.19 -4.70 16 25 C 0.69 18.01 8.31 179.44 1.49 19.50 16 26 O -0.58 -19.30 17.15 -3.83 -0.07 -19.37 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.88 8.04 -2.38 -0.02 0.86 16 29 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.15 2.66 8.00 -2.39 -0.02 2.65 16 33 H 0.15 2.74 7.85 -2.39 -0.02 2.72 16 34 H 0.42 10.02 8.82 -92.70 -0.82 9.20 16 35 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.12 6.65 6.13 -2.91 -0.02 6.63 16 37 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 38 H 0.09 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.10 5.17 6.22 -2.91 -0.02 5.15 16 Total: -1.00 -84.23 343.49 3.33 -80.90 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.29 Total: 27.85 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 7.13 Total: 5.79 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -5.97 Total: -96.83 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -0.16 Total: -59.47 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -84.23 3.33 -80.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.077 kcal (2) G-P(sol) polarization free energy of solvation -84.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds