Wall clock time and date at job start Fri Apr 10 2020 14:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28387 * 119.09912 * 2 1 4 4 C 1.31402 * 122.27064 * 180.02562 * 3 2 1 5 5 C 1.47883 * 119.89921 * 180.02562 * 4 3 2 6 6 O 1.21553 * 120.00472 * 173.46443 * 5 4 3 7 7 N 1.34777 * 119.99801 * 353.46108 * 5 4 3 8 8 C 1.46499 * 120.00250 * 3.46404 * 7 5 4 9 9 C 1.50704 * 109.47017 * 82.88512 * 8 7 5 10 10 H 1.08007 * 119.99677 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00261 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99977 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99937 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47464 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47330 * 119.99912 * 13 11 9 16 16 H 1.48505 * 109.47070 * 239.99973 * 13 11 9 17 17 C 1.46501 * 120.00119 * 183.46918 * 7 5 4 18 18 C 1.50696 * 109.47297 * 94.91713 * 17 7 5 19 19 C 1.34514 * 125.79047 * 89.71865 * 18 17 7 20 20 C 1.41387 * 106.84328 * 179.89107 * 19 18 17 21 21 C 1.34517 * 106.83709 * 0.36674 * 20 19 18 22 22 O 1.34304 * 108.42388 * 359.77852 * 21 20 19 23 23 C 1.41577 * 120.20871 * 359.97438 * 4 3 2 24 24 C 1.36324 * 118.23954 * 0.02562 * 23 4 3 25 25 C 1.34606 * 119.10620 * 180.02562 * 2 1 3 26 26 O 1.21984 * 120.22146 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47656 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47175 * 120.00041 * 1 2 3 29 29 H 1.08996 * 109.47072 * 239.99820 * 1 2 3 30 30 H 1.08988 * 109.47574 * 202.88524 * 8 7 5 31 31 H 1.09004 * 109.47100 * 322.89320 * 8 7 5 32 32 H 0.97007 * 120.00050 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.47089 * 214.91838 * 17 7 5 34 34 H 1.08997 * 109.47033 * 334.91691 * 17 7 5 35 35 H 1.07996 * 126.58189 * 0.02562 * 19 18 17 36 36 H 1.07993 * 126.58122 * 180.16721 * 20 19 18 37 37 H 1.08003 * 125.78738 * 179.75108 * 21 20 19 38 38 H 1.08003 * 120.88009 * 179.72925 * 23 4 3 39 39 H 1.08004 * 121.03369 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1945 -0.0005 5 6 4.0665 2.5153 0.0001 6 8 5.2740 2.5878 0.1195 7 7 3.3338 3.6388 -0.1318 8 6 1.8726 3.5568 -0.1994 9 6 1.3092 3.4715 1.1957 10 1 1.9732 3.4783 2.0476 11 6 -0.0538 3.3849 1.3847 12 7 -0.8623 3.3772 0.3475 13 14 -0.7522 3.2800 3.1141 14 1 0.3588 3.3077 4.0991 15 1 -1.6558 4.4337 3.3539 16 1 -1.5146 2.0145 3.2641 17 6 3.9984 4.9422 -0.2076 18 6 4.1897 5.3252 -1.6524 19 6 3.3153 6.0164 -2.4055 20 6 3.8961 6.1519 -3.6874 21 6 5.0872 5.5282 -3.6434 22 8 5.2597 5.0294 -2.4084 23 6 4.1803 0.0123 -0.0005 24 6 3.5323 -1.1871 -0.0005 25 6 2.1198 -1.1761 -0.0005 26 8 1.4975 -2.2253 -0.0015 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3633 -0.5138 0.8899 30 1 1.4814 4.4448 -0.6956 31 1 1.5842 2.6691 -0.7625 32 1 -1.8213 3.3166 0.4805 33 1 3.3837 5.6929 0.2890 34 1 4.9692 4.8841 0.2845 35 1 2.3549 6.3970 -2.0907 36 1 3.4648 6.6561 -4.5394 37 1 5.7860 5.4428 -4.4624 38 1 5.2593 0.0594 -0.0053 39 1 4.0819 -2.1169 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060626229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:32 Heat of formation + Delta-G solvation = 40.686234 kcal Electronic energy + Delta-G solvation = -27173.474245 eV Core-core repulsion = 23278.945375 eV Total energy + Delta-G solvation = -3894.528871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24933 -41.64157 -39.16951 -37.23426 -35.48574 -34.38500 -32.93589 -32.59341 -31.46906 -30.06375 -27.92329 -27.43888 -25.81534 -24.47026 -23.22314 -22.98690 -21.40817 -20.67996 -19.67810 -18.03931 -17.23131 -17.07243 -16.56415 -16.37995 -16.14581 -15.96773 -15.41079 -15.11787 -14.67060 -14.55734 -14.06198 -13.55752 -13.33664 -12.94954 -12.86907 -12.65614 -12.53839 -12.48485 -12.31479 -12.06837 -12.00483 -11.78632 -11.38661 -11.04037 -11.01357 -10.51497 -10.26719 -10.08626 -9.92162 -9.65455 -9.62018 -9.02734 -8.59450 -8.23886 -8.14899 -7.96156 -6.27067 -4.28051 0.91323 1.56822 1.95039 2.63482 2.84935 3.13328 3.16160 3.23909 3.27837 3.38622 3.74762 4.01692 4.24134 4.45784 4.97490 5.01929 5.07038 5.08555 5.15040 5.29663 5.33450 5.64206 5.69613 5.76561 5.92896 5.96511 6.01750 6.05598 6.17986 6.22445 6.32955 6.35658 6.37681 6.55681 6.77378 7.28133 7.39543 7.46884 7.67597 7.91655 7.99642 8.04777 8.45592 8.68208 8.78861 9.32938 10.79180 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.006083 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.403508 B = 4601.841938 C = 6217.836369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.334 5.334 3 N -0.094 5.094 4 C -0.020 4.020 5 C 0.591 3.409 6 O -0.558 6.558 7 N -0.576 5.576 8 C 0.227 3.773 9 C -0.504 4.504 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.194 3.806 18 C -0.019 4.019 19 C -0.198 4.198 20 C -0.216 4.216 21 C -0.051 4.051 22 O -0.169 6.169 23 C -0.019 4.019 24 C -0.221 4.221 25 C 0.474 3.526 26 O -0.545 6.545 27 H 0.134 0.866 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.197 0.803 38 H 0.154 0.846 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 1.329 -4.935 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.154 5.154 3 N 0.074 4.926 4 C -0.187 4.187 5 C 0.377 3.623 6 O -0.436 6.436 7 N -0.305 5.305 8 C 0.107 3.893 9 C -0.543 4.543 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.526 5.526 13 Si 0.710 3.290 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.208 1.208 17 C 0.070 3.930 18 C -0.071 4.071 19 C -0.218 4.218 20 C -0.235 4.235 21 C -0.119 4.119 22 O -0.064 6.064 23 C -0.043 4.043 24 C -0.250 4.250 25 C 0.274 3.726 26 O -0.425 6.425 27 H 0.152 0.848 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.213 0.787 38 H 0.172 0.828 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.714 1.076 -4.799 7.539 hybrid contribution -0.239 -0.505 0.730 0.920 sum 5.475 0.571 -4.069 6.845 Atomic orbital electron populations 1.22441 0.73304 1.08121 1.02885 1.47147 1.10409 1.02811 1.55059 1.72720 1.09927 1.08698 1.01279 1.21650 0.88938 0.95669 1.12405 1.17252 0.85605 0.82710 0.76731 1.90723 1.13469 1.86577 1.52866 1.48229 1.10268 1.03783 1.68258 1.20115 0.71411 0.99565 0.98178 1.21448 0.91761 1.49018 0.92095 0.92306 1.24795 0.96738 0.95161 0.96630 1.69916 1.03669 1.49987 1.29031 0.86675 0.79305 0.77958 0.85037 1.19780 1.20746 1.20808 1.19781 1.00234 0.86482 0.86497 1.23146 0.86802 1.01466 0.95649 1.21693 1.01404 1.04974 0.93683 1.21804 0.96544 1.06195 0.99005 1.23969 0.99950 1.01367 0.86601 1.84087 1.40174 1.61437 1.20744 1.22147 1.02371 0.90662 0.89123 1.22458 0.92879 0.99878 1.09794 1.18191 0.90104 0.84340 0.79970 1.90903 1.69634 1.29939 1.52056 0.84780 0.90416 0.90415 0.94488 0.90910 0.92603 0.86817 0.88553 0.83231 0.83835 0.78652 0.82800 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.20 59.85 0.61 1.90 16 2 N -0.33 -6.41 3.62 -70.16 -0.25 -6.67 16 3 N -0.09 -1.89 5.54 33.41 0.19 -1.71 16 4 C -0.02 -0.38 6.72 -82.83 -0.56 -0.94 16 5 C 0.59 11.88 7.59 -12.31 -0.09 11.79 16 6 O -0.56 -11.68 15.89 5.32 0.08 -11.60 16 7 N -0.58 -11.33 2.46 -177.54 -0.44 -11.76 16 8 C 0.23 4.89 4.79 -5.19 -0.02 4.87 16 9 C -0.50 -11.74 8.03 -34.44 -0.28 -12.02 16 10 H 0.06 1.44 7.81 -52.48 -0.41 1.03 16 11 C 0.07 1.62 5.08 -17.82 -0.09 1.53 16 12 N -0.89 -21.19 12.06 55.43 0.67 -20.52 16 13 Si 0.88 19.08 29.54 -169.99 -5.02 14.06 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.19 3.29 5.98 -5.19 -0.03 3.26 16 18 C -0.02 -0.32 6.90 -35.63 -0.25 -0.56 16 19 C -0.20 -3.07 10.81 -39.70 -0.43 -3.50 16 20 C -0.22 -2.94 10.91 -39.70 -0.43 -3.37 16 21 C -0.05 -0.67 12.09 29.42 0.36 -0.32 16 22 O -0.17 -2.82 10.65 5.69 0.06 -2.76 16 23 C -0.02 -0.31 9.67 -39.00 -0.38 -0.68 16 24 C -0.22 -3.48 10.11 -39.12 -0.40 -3.88 16 25 C 0.47 8.91 7.47 -15.19 -0.11 8.80 16 26 O -0.55 -11.30 17.07 4.93 0.08 -11.22 16 27 H 0.13 2.64 6.35 -51.93 -0.33 2.31 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.83 8.02 -51.94 -0.42 0.42 16 31 H 0.07 1.67 5.23 -53.09 -0.28 1.39 16 32 H 0.26 6.08 8.31 -40.82 -0.34 5.74 16 33 H 0.11 1.76 8.11 -51.93 -0.42 1.33 16 34 H 0.10 1.61 7.24 -51.93 -0.38 1.23 16 35 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.15 2.12 7.73 -52.48 -0.41 1.72 16 39 H 0.16 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -28.53 341.81 -5.89 -34.42 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.31 Total: 5.74 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -2.10 Total: 6.86 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.16 Total: -40.66 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.23 Total: -25.58 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.53 -5.89 -34.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060626229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.105 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds