Wall clock time and date at job start Fri Apr 10 2020 14:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34766 * 124.17264 * 2 1 4 4 O 1.21234 * 127.16018 * 0.02562 * 3 2 1 5 5 C 1.51584 * 105.68123 * 180.02562 * 3 2 1 6 6 N 1.47312 * 103.59346 * 0.02562 * 5 3 2 7 7 C 1.46507 * 126.69160 * 180.02562 * 6 5 3 8 8 C 1.50693 * 109.47189 * 269.99609 * 7 6 5 9 9 O 1.21288 * 120.00026 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00229 * 179.97438 * 8 7 6 11 11 C 1.39240 * 119.99891 * 175.70844 * 10 8 7 12 12 C 1.39480 * 119.82819 * 215.01502 * 11 10 8 13 13 C 1.36381 * 120.16522 * 179.76400 * 12 11 10 14 14 C 1.40867 * 119.82657 * 0.51262 * 13 12 11 15 15 C 1.41155 * 120.16749 * 179.71980 * 14 13 12 16 16 H 1.07995 * 120.00196 * 214.80564 * 15 14 13 17 17 C 1.39905 * 119.99653 * 34.80091 * 15 14 13 18 18 N 1.30872 * 120.00211 * 355.56376 * 17 15 14 19 19 Si 1.86803 * 120.00144 * 175.56211 * 17 15 14 20 20 H 1.48504 * 109.46956 * 59.99900 * 19 17 15 21 21 H 1.48498 * 109.47278 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47052 * 300.00243 * 19 17 15 23 23 C 1.40874 * 119.67555 * 359.74089 * 14 13 12 24 24 C 1.36377 * 119.82590 * 0.02562 * 23 14 13 25 25 C 1.33789 * 124.17733 * 180.02562 * 2 1 3 26 26 O 1.21537 * 123.77258 * 0.21575 * 25 2 1 27 27 H 1.09001 * 109.47126 * 269.94165 * 1 2 3 28 28 H 1.08993 * 109.47049 * 29.94515 * 1 2 3 29 29 H 1.09005 * 109.46958 * 149.94605 * 1 2 3 30 30 H 1.08999 * 110.60510 * 241.47808 * 5 3 2 31 31 H 1.08998 * 110.59857 * 118.52575 * 5 3 2 32 32 H 1.09006 * 109.46897 * 29.99849 * 7 6 5 33 33 H 1.08997 * 109.47224 * 149.99653 * 7 6 5 34 34 H 0.96993 * 119.99716 * 355.71320 * 10 8 7 35 35 H 1.07997 * 119.92240 * 0.02562 * 12 11 10 36 36 H 1.07993 * 120.08884 * 180.25553 * 13 12 11 37 37 H 0.97000 * 120.00408 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.08787 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.91512 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2220 1.1150 0.0000 4 8 1.8340 2.2636 0.0004 5 6 3.6596 0.6342 -0.0007 6 7 3.5338 -0.8335 -0.0016 7 6 4.6296 -1.8060 -0.0020 8 6 5.0055 -2.1386 -1.4229 9 8 4.4165 -1.6146 -2.3446 10 7 5.9970 -3.0177 -1.6695 11 6 6.2849 -3.3929 -2.9792 12 6 6.6995 -4.6963 -3.2522 13 6 6.9787 -5.0725 -4.5330 14 6 6.8577 -4.1379 -5.5800 15 6 7.1505 -4.5179 -6.9075 16 1 7.6025 -3.8087 -7.5850 17 6 6.8552 -5.8134 -7.3455 18 7 6.3884 -6.6988 -6.5023 19 14 7.1272 -6.2795 -9.1338 20 1 8.5606 -6.1020 -9.4791 21 1 6.7410 -7.6985 -9.3399 22 1 6.2970 -5.4086 -10.0041 23 6 6.4435 -2.8218 -5.2956 24 6 6.1632 -2.4617 -4.0104 25 6 2.2166 -1.1068 -0.0005 26 8 1.7604 -2.2333 -0.0048 27 1 -0.3633 -0.0010 1.0277 28 1 -0.3633 0.8904 -0.5129 29 1 -0.3633 -0.8896 -0.5147 30 1 4.1782 0.9744 0.8957 31 1 4.1775 0.9749 -0.8972 32 1 5.4920 -1.3818 0.5123 33 1 4.3105 -2.7131 0.5112 34 1 6.5098 -3.3889 -0.9347 35 1 6.7957 -5.4106 -2.4479 36 1 7.2957 -6.0832 -4.7435 37 1 6.1833 -7.5969 -6.8060 38 1 6.3489 -2.0997 -6.0931 39 1 5.8459 -1.4530 -3.7907 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598976482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:47 Heat of formation + Delta-G solvation = -37.162036 kcal Electronic energy + Delta-G solvation = -25525.918411 eV Core-core repulsion = 21628.013786 eV Total energy + Delta-G solvation = -3897.904625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.48308 -39.77589 -38.75463 -37.36531 -36.27014 -35.35335 -34.46393 -32.99863 -30.73790 -29.61157 -28.87301 -27.38367 -26.84333 -24.77063 -22.80823 -21.76388 -21.05566 -20.43421 -19.72330 -17.83587 -17.72553 -17.34228 -16.92988 -16.70275 -16.32763 -15.83755 -15.26129 -15.01433 -14.78850 -14.40164 -14.36301 -14.18432 -13.94998 -13.47332 -13.16017 -12.95055 -12.83362 -12.67815 -12.35107 -12.12489 -11.73196 -11.40055 -11.16008 -11.11215 -11.03088 -10.76046 -10.46375 -10.20233 -10.02535 -9.74661 -9.51865 -9.39695 -9.00807 -8.85583 -7.58286 -6.91107 -6.64173 -4.37279 1.40596 1.78629 2.46897 2.64609 2.81872 2.96885 3.06019 3.08221 3.10635 3.27190 3.65587 3.79455 3.96286 4.41060 4.66683 4.71223 4.84487 4.93912 4.98999 5.02248 5.06007 5.28305 5.38198 5.56818 5.63043 6.07002 6.16074 6.38797 6.68975 6.86080 6.87298 7.03133 7.10332 7.15827 7.25999 7.59927 7.68141 7.80328 7.88890 8.02646 8.19046 8.28063 8.56686 8.65523 8.89939 8.96060 10.26811 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.024176 B = 0.002611 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.889099 B =10722.576186 C =10903.067259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.527 3.473 4 O -0.475 6.475 5 C 0.065 3.935 6 N -0.608 5.608 7 C 0.136 3.864 8 C 0.476 3.524 9 O -0.521 6.521 10 N -0.647 5.647 11 C 0.001 3.999 12 C -0.119 4.119 13 C -0.142 4.142 14 C 0.101 3.899 15 C -0.461 4.461 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.811 5.811 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.207 4.207 24 C -0.084 4.084 25 C 0.706 3.294 26 O -0.536 6.536 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.397 0.603 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.279 0.721 38 H 0.095 0.905 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 9.284 15.688 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.314 3.686 4 O -0.345 6.345 5 C -0.061 4.061 6 N -0.346 5.346 7 C 0.010 3.990 8 C 0.260 3.740 9 O -0.396 6.396 10 N -0.291 5.291 11 C -0.092 4.092 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.099 3.901 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.438 5.438 19 Si 0.741 3.259 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.227 4.227 24 C -0.104 4.104 25 C 0.408 3.592 26 O -0.409 6.409 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.190 9.331 15.046 18.193 hybrid contribution 0.199 -0.554 -0.529 0.792 sum -3.991 8.776 14.516 17.426 Atomic orbital electron populations 1.21830 0.74982 1.04916 1.03495 1.46223 1.09653 1.08078 1.68534 1.20843 0.88880 0.84680 0.74154 1.90811 1.79214 1.17905 1.46609 1.22531 0.95893 0.80848 1.06805 1.46925 1.04764 1.06122 1.76752 1.21155 0.88916 0.93365 0.95563 1.21012 0.80368 0.81121 0.91470 1.90715 1.52319 1.51158 1.45441 1.42918 1.33592 1.44308 1.08235 1.17237 1.15032 0.94269 0.82617 1.20319 1.03704 0.92619 0.97233 1.21202 1.03575 1.01248 0.90181 1.17726 0.88330 0.90719 0.93352 1.19476 1.36413 0.96650 0.96634 0.90621 1.25887 0.92927 0.95819 0.99936 1.69747 1.33577 1.04630 1.35820 0.86239 0.79655 0.77890 0.82105 1.19032 1.20406 1.19083 1.20803 1.08840 0.98052 0.94987 1.20356 0.99898 0.97553 0.92555 1.15747 0.81737 0.84206 0.77538 1.90999 1.75049 1.20313 1.54494 0.90950 0.89394 0.89098 0.85800 0.85547 0.86536 0.86284 0.76957 0.88990 0.84997 0.91023 0.88636 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.73 59.85 0.64 1.44 16 2 N -0.58 -6.71 3.00 -128.16 -0.39 -7.09 16 3 C 0.53 5.70 8.32 -10.56 -0.09 5.61 16 4 O -0.47 -6.11 17.76 5.60 0.10 -6.01 16 5 C 0.07 0.54 7.66 -4.32 -0.03 0.51 16 6 N -0.61 -6.77 2.51 -181.39 -0.45 -7.23 16 7 C 0.14 1.33 6.63 -5.19 -0.03 1.29 16 8 C 0.48 7.40 7.73 -10.99 -0.08 7.32 16 9 O -0.52 -10.61 13.85 5.55 0.08 -10.53 16 10 N -0.65 -10.22 5.30 -9.74 -0.05 -10.27 16 11 C 0.00 0.01 6.31 -83.57 -0.53 -0.51 16 12 C -0.12 -2.63 9.90 -39.79 -0.39 -3.03 16 13 C -0.14 -3.61 8.62 -39.26 -0.34 -3.94 16 14 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.24 9.02 -37.85 -0.34 -12.58 16 16 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 17 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 18 N -0.81 -21.06 10.60 55.55 0.59 -20.47 16 19 Si 0.92 18.97 29.56 -169.99 -5.03 13.95 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.21 -5.18 9.74 -39.26 -0.38 -5.57 16 24 C -0.08 -1.95 8.61 -39.79 -0.34 -2.30 16 25 C 0.71 9.69 8.31 -88.02 -0.73 8.96 16 26 O -0.54 -9.23 17.15 5.33 0.09 -9.14 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.70 8.00 -51.93 -0.42 0.28 16 29 H 0.09 0.86 7.86 -51.93 -0.41 0.45 16 30 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.06 8.03 -51.93 -0.42 0.64 16 34 H 0.40 4.50 8.82 -40.82 -0.36 4.14 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 37 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.11 2.40 6.22 -52.49 -0.33 2.08 16 LS Contribution 343.48 15.07 5.18 5.18 Total: -1.00 -35.61 343.48 -7.56 -43.17 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.33 Total: 7.49 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -3.34 Total: 0.96 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.30 Total: -45.06 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.27 Total: -25.68 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.61 -7.56 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598976482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.007 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds