Wall clock time and date at job start Fri Apr 10 2020 14:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34766 * 124.17264 * 2 1 4 4 O 1.21234 * 127.16018 * 0.02562 * 3 2 1 5 5 C 1.51584 * 105.68123 * 180.02562 * 3 2 1 6 6 N 1.47312 * 103.59346 * 0.02562 * 5 3 2 7 7 C 1.46507 * 126.69160 * 180.02562 * 6 5 3 8 8 C 1.50693 * 109.47189 * 269.99609 * 7 6 5 9 9 O 1.21288 * 120.00026 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00229 * 179.97438 * 8 7 6 11 11 C 1.39240 * 119.99891 * 175.70844 * 10 8 7 12 12 C 1.39480 * 119.82819 * 215.01502 * 11 10 8 13 13 C 1.36381 * 120.16522 * 179.76400 * 12 11 10 14 14 C 1.40867 * 119.82657 * 0.51262 * 13 12 11 15 15 C 1.41155 * 120.16749 * 179.71980 * 14 13 12 16 16 H 1.07995 * 120.00196 * 214.80564 * 15 14 13 17 17 C 1.39905 * 119.99653 * 34.80091 * 15 14 13 18 18 N 1.30872 * 120.00211 * 355.56376 * 17 15 14 19 19 Si 1.86803 * 120.00144 * 175.56211 * 17 15 14 20 20 H 1.48504 * 109.46956 * 59.99900 * 19 17 15 21 21 H 1.48498 * 109.47278 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47052 * 300.00243 * 19 17 15 23 23 C 1.40874 * 119.67555 * 359.74089 * 14 13 12 24 24 C 1.36377 * 119.82590 * 0.02562 * 23 14 13 25 25 C 1.33789 * 124.17733 * 180.02562 * 2 1 3 26 26 O 1.21537 * 123.77258 * 0.21575 * 25 2 1 27 27 H 1.09001 * 109.47126 * 269.94165 * 1 2 3 28 28 H 1.08993 * 109.47049 * 29.94515 * 1 2 3 29 29 H 1.09005 * 109.46958 * 149.94605 * 1 2 3 30 30 H 1.08999 * 110.60510 * 241.47808 * 5 3 2 31 31 H 1.08998 * 110.59857 * 118.52575 * 5 3 2 32 32 H 1.09006 * 109.46897 * 29.99849 * 7 6 5 33 33 H 1.08997 * 109.47224 * 149.99653 * 7 6 5 34 34 H 0.96993 * 119.99716 * 355.71320 * 10 8 7 35 35 H 1.07997 * 119.92240 * 0.02562 * 12 11 10 36 36 H 1.07993 * 120.08884 * 180.25553 * 13 12 11 37 37 H 0.97000 * 120.00408 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.08787 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.91512 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2220 1.1150 0.0000 4 8 1.8340 2.2636 0.0004 5 6 3.6596 0.6342 -0.0007 6 7 3.5338 -0.8335 -0.0016 7 6 4.6296 -1.8060 -0.0020 8 6 5.0055 -2.1386 -1.4229 9 8 4.4165 -1.6146 -2.3446 10 7 5.9970 -3.0177 -1.6695 11 6 6.2849 -3.3929 -2.9792 12 6 6.6995 -4.6963 -3.2522 13 6 6.9787 -5.0725 -4.5330 14 6 6.8577 -4.1379 -5.5800 15 6 7.1505 -4.5179 -6.9075 16 1 7.6025 -3.8087 -7.5850 17 6 6.8552 -5.8134 -7.3455 18 7 6.3884 -6.6988 -6.5023 19 14 7.1272 -6.2795 -9.1338 20 1 8.5606 -6.1020 -9.4791 21 1 6.7410 -7.6985 -9.3399 22 1 6.2970 -5.4086 -10.0041 23 6 6.4435 -2.8218 -5.2956 24 6 6.1632 -2.4617 -4.0104 25 6 2.2166 -1.1068 -0.0005 26 8 1.7604 -2.2333 -0.0048 27 1 -0.3633 -0.0010 1.0277 28 1 -0.3633 0.8904 -0.5129 29 1 -0.3633 -0.8896 -0.5147 30 1 4.1782 0.9744 0.8957 31 1 4.1775 0.9749 -0.8972 32 1 5.4920 -1.3818 0.5123 33 1 4.3105 -2.7131 0.5112 34 1 6.5098 -3.3889 -0.9347 35 1 6.7957 -5.4106 -2.4479 36 1 7.2957 -6.0832 -4.7435 37 1 6.1833 -7.5969 -6.8060 38 1 6.3489 -2.0997 -6.0931 39 1 5.8459 -1.4530 -3.7907 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598976482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:46 Heat of formation + Delta-G solvation = -62.013720 kcal Electronic energy + Delta-G solvation = -25526.996060 eV Core-core repulsion = 21628.013786 eV Total energy + Delta-G solvation = -3898.982275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.37514 -41.16259 -39.76613 -39.04713 -37.30592 -36.36719 -35.99264 -34.72217 -31.80825 -31.43281 -30.48880 -28.18723 -27.91426 -26.40899 -23.85708 -23.29944 -22.66542 -21.67953 -20.99408 -19.29421 -18.88449 -18.62656 -18.02478 -17.72598 -17.65917 -17.01940 -16.81061 -16.15282 -15.96092 -15.68505 -15.47413 -15.21068 -15.09514 -14.82546 -14.59710 -14.33076 -14.01514 -13.70321 -13.62519 -13.56320 -13.23233 -13.21944 -12.82391 -12.73250 -12.48980 -12.09521 -11.82482 -11.41665 -11.39775 -11.23602 -11.05343 -10.92861 -10.65572 -10.01176 -9.45642 -8.72343 -8.50851 -6.33700 0.52995 0.79691 0.95434 1.14273 1.38465 1.45386 1.50342 1.73184 1.85544 1.91184 2.23132 2.47324 2.80948 3.00664 3.65692 3.68412 3.81468 4.17846 4.24698 4.34890 4.37077 4.38960 4.41050 4.47055 4.53539 4.67910 4.81435 4.94150 5.13145 5.15650 5.21851 5.35025 5.44305 5.69737 5.91031 5.97600 6.02788 6.13967 6.26693 6.39780 6.66973 6.72839 6.92319 6.96481 7.00410 7.40159 8.41464 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.024176 B = 0.002611 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.889099 B =10722.576186 C =10903.067259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.525 3.475 4 O -0.499 6.499 5 C 0.071 3.929 6 N -0.606 5.606 7 C 0.144 3.856 8 C 0.473 3.527 9 O -0.572 6.572 10 N -0.639 5.639 11 C 0.023 3.977 12 C -0.119 4.119 13 C -0.161 4.161 14 C 0.066 3.934 15 C -0.500 4.500 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.842 5.842 19 Si 0.987 3.013 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.224 4.224 24 C -0.095 4.095 25 C 0.697 3.303 26 O -0.581 6.581 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.176 0.824 31 H 0.130 0.870 32 H 0.181 0.819 33 H 0.135 0.865 34 H 0.423 0.577 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.284 0.716 38 H 0.093 0.907 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 9.863 17.974 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C 0.315 3.685 4 O -0.371 6.371 5 C -0.053 4.053 6 N -0.342 5.342 7 C 0.020 3.980 8 C 0.261 3.739 9 O -0.451 6.451 10 N -0.285 5.285 11 C -0.071 4.071 12 C -0.139 4.139 13 C -0.181 4.181 14 C 0.064 3.936 15 C -0.531 4.531 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.808 3.192 20 H -0.181 1.181 21 H -0.193 1.193 22 H -0.191 1.191 23 C -0.244 4.244 24 C -0.115 4.115 25 C 0.399 3.601 26 O -0.457 6.457 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.193 0.807 31 H 0.148 0.852 32 H 0.198 0.802 33 H 0.153 0.847 34 H 0.261 0.739 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.448 9.938 17.396 20.329 hybrid contribution -0.089 -0.614 -1.066 1.234 sum -3.537 9.325 16.329 19.134 Atomic orbital electron populations 1.21995 0.74180 1.04824 1.04835 1.46382 1.10498 1.07975 1.68055 1.21250 0.89924 0.84069 0.73270 1.90805 1.79864 1.18651 1.47805 1.22798 0.94304 0.78942 1.09300 1.47132 1.04051 1.07610 1.75408 1.21437 0.90565 0.94630 0.91368 1.22166 0.78890 0.79274 0.93612 1.90708 1.53786 1.52817 1.47808 1.42838 1.34417 1.44525 1.06714 1.17296 1.11656 0.93318 0.84826 1.20598 1.02621 0.93681 0.97003 1.21190 1.04875 1.00587 0.91488 1.18032 0.89806 0.91655 0.94097 1.19705 1.38426 0.97819 0.97121 0.90998 1.26730 0.92165 0.95239 1.04317 1.69818 1.34404 1.05071 1.37702 0.85172 0.79822 0.77798 0.76377 1.18097 1.19266 1.19134 1.20934 1.09571 0.97808 0.96063 1.20503 1.00129 0.98341 0.92569 1.16039 0.82789 0.83943 0.77284 1.90962 1.76038 1.22001 1.56697 0.88981 0.88586 0.90055 0.80739 0.85189 0.80202 0.84706 0.73875 0.85521 0.86457 0.90506 0.88914 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.73 127.77 1.37 2.80 16 2 N -0.58 -12.78 3.00 -796.65 -2.39 -15.17 16 3 C 0.53 10.30 8.32 87.94 0.73 11.03 16 4 O -0.50 -12.08 17.76 -2.89 -0.05 -12.13 16 5 C 0.07 0.91 7.66 85.76 0.66 1.57 16 6 N -0.61 -11.38 2.51 -846.23 -2.12 -13.50 16 7 C 0.14 2.13 6.63 85.63 0.57 2.70 16 8 C 0.47 13.26 7.73 87.65 0.68 13.94 16 9 O -0.57 -22.52 13.85 -3.05 -0.04 -22.56 16 10 N -0.64 -18.08 5.30 -303.11 -1.61 -19.69 16 11 C 0.02 0.94 6.31 38.56 0.24 1.18 16 12 C -0.12 -5.17 9.90 22.14 0.22 -4.95 16 13 C -0.16 -8.37 8.62 22.48 0.19 -8.18 16 14 C 0.07 3.67 5.55 -21.27 -0.12 3.55 16 15 C -0.50 -27.69 9.02 23.39 0.21 -27.48 16 16 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 17 C 0.03 1.41 5.42 85.24 0.46 1.87 16 18 N -0.84 -44.94 10.60 21.82 0.23 -44.70 16 19 Si 0.99 39.56 29.56 68.60 2.03 41.58 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 C -0.22 -11.61 9.74 22.48 0.22 -11.40 16 24 C -0.10 -4.46 8.61 22.13 0.19 -4.27 16 25 C 0.70 18.01 8.31 179.44 1.49 19.50 16 26 O -0.58 -19.63 17.15 -3.83 -0.07 -19.70 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.48 8.00 -2.39 -0.02 1.46 16 29 H 0.08 1.56 7.86 -2.38 -0.02 1.55 16 30 H 0.18 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.18 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.14 1.74 8.03 -2.39 -0.02 1.72 16 34 H 0.42 7.64 8.82 -92.71 -0.82 6.82 16 35 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 37 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 38 H 0.09 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.11 5.01 6.22 -2.91 -0.02 4.99 16 Total: -1.00 -82.99 343.48 3.39 -79.61 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.29 Total: 24.40 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 7.12 Total: 1.87 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -5.89 Total: -93.06 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.16 Total: -54.39 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -82.99 3.39 -79.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598976482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.594 kcal (2) G-P(sol) polarization free energy of solvation -82.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds