Wall clock time and date at job start Fri Apr 10 2020 14:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 124.17586 * 2 1 4 4 O 1.21229 * 127.16277 * 0.02562 * 3 2 1 5 5 C 1.51581 * 105.68068 * 180.02562 * 3 2 1 6 6 N 1.47310 * 103.59502 * 0.02562 * 5 3 2 7 7 N 1.40099 * 126.68885 * 179.97438 * 6 5 3 8 8 C 1.34777 * 119.99877 * 105.00678 * 7 6 5 9 9 O 1.21280 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.00131 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47008 * 179.97438 * 10 8 7 12 12 C 1.37637 * 120.12210 * 264.99354 * 11 10 8 13 13 C 1.38617 * 120.24545 * 179.97438 * 12 11 10 14 14 C 1.38662 * 120.50068 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.24945 * 0.02562 * 14 13 12 16 16 C 1.40692 * 120.13017 * 84.72445 * 11 10 8 17 17 C 1.41402 * 120.24366 * 359.97438 * 16 11 10 18 18 H 1.07996 * 119.99692 * 333.89901 * 17 16 11 19 19 C 1.39952 * 119.99985 * 153.89962 * 17 16 11 20 20 N 1.30817 * 119.99956 * 343.70971 * 19 17 16 21 21 Si 1.86797 * 119.99651 * 163.71064 * 19 17 16 22 22 H 1.48495 * 109.47102 * 90.00226 * 21 19 17 23 23 H 1.48505 * 109.46943 * 210.00003 * 21 19 17 24 24 H 1.48500 * 109.47194 * 330.00031 * 21 19 17 25 25 C 1.33789 * 124.17385 * 180.31583 * 2 1 3 26 26 O 1.21536 * 123.77494 * 359.96969 * 25 2 1 27 27 H 1.09003 * 109.47029 * 359.96328 * 1 2 3 28 28 H 1.08999 * 109.47493 * 119.97169 * 1 2 3 29 29 H 1.08997 * 109.47071 * 239.97162 * 1 2 3 30 30 H 1.09004 * 110.59934 * 241.47520 * 5 3 2 31 31 H 1.08998 * 110.59993 * 118.53186 * 5 3 2 32 32 H 0.97000 * 120.00103 * 285.00207 * 7 6 5 33 33 H 1.08997 * 109.47024 * 59.99400 * 10 8 7 34 34 H 1.09005 * 109.46432 * 299.99626 * 10 8 7 35 35 H 1.07996 * 119.88263 * 0.02562 * 12 11 10 36 36 H 1.07999 * 119.75371 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.87457 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.12909 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00500 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1150 0.0000 4 8 1.8342 2.2635 0.0004 5 6 3.6596 0.6341 -0.0007 6 7 3.5338 -0.8336 -0.0016 7 7 4.5816 -1.7636 -0.0030 8 6 4.8857 -2.4377 1.1237 9 8 4.2527 -2.2390 2.1389 10 6 6.0133 -3.4377 1.1225 11 6 6.1460 -4.0468 2.4945 12 6 7.0463 -3.5274 3.3967 13 6 7.1700 -4.0854 4.6596 14 6 6.3908 -5.1713 5.0286 15 6 5.4850 -5.7076 4.1425 16 6 5.3461 -5.1450 2.8599 17 6 4.4134 -5.6831 1.9435 18 1 3.9989 -5.0588 1.1658 19 6 4.0273 -7.0245 2.0443 20 7 4.7401 -7.8585 2.7569 21 14 2.4944 -7.6241 1.1611 22 1 2.8582 -8.0894 -0.2014 23 1 1.8915 -8.7471 1.9231 24 1 1.5150 -6.5125 1.0595 25 6 2.2165 -1.1069 -0.0061 26 8 1.7602 -2.2333 -0.0118 27 1 -0.3633 1.0277 0.0007 28 1 -0.3634 -0.5134 -0.8902 29 1 -0.3633 -0.5143 0.8897 30 1 4.1782 0.9743 0.8957 31 1 4.1776 0.9749 -0.8971 32 1 5.0881 -1.9223 -0.8148 33 1 6.9436 -2.9359 0.8565 34 1 5.8026 -4.2218 0.3952 35 1 7.6580 -2.6814 3.1201 36 1 7.8787 -3.6712 5.3614 37 1 6.4953 -5.5979 6.0153 38 1 4.8794 -6.5537 4.4318 39 1 4.4724 -8.7881 2.8271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777533627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:54 Heat of formation + Delta-G solvation = -11.462252 kcal Electronic energy + Delta-G solvation = -26400.574604 eV Core-core repulsion = 22503.784405 eV Total energy + Delta-G solvation = -3896.790199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.39341 -39.43831 -38.58838 -37.37932 -36.21527 -35.43888 -33.62579 -32.73547 -31.59106 -29.47712 -28.14904 -27.33620 -26.50625 -24.98705 -22.98412 -21.63036 -20.94898 -20.21593 -19.57137 -18.39708 -17.47306 -17.16273 -16.90148 -16.53052 -16.09823 -15.65370 -15.38080 -14.61939 -14.50009 -14.37783 -14.18861 -14.00044 -13.74449 -13.38709 -13.24069 -12.92474 -12.79244 -12.56754 -11.81397 -11.56669 -11.33198 -11.16231 -11.05568 -10.95440 -10.71916 -10.51286 -10.37851 -9.97121 -9.90795 -9.51212 -9.48266 -9.38596 -9.13804 -9.00736 -7.35144 -7.31576 -6.73829 -4.34587 1.18370 1.42299 2.42393 2.81177 2.90727 2.99657 3.07811 3.11191 3.20070 3.30504 3.79571 3.99138 4.12763 4.58541 4.66522 4.74703 4.95754 5.14007 5.27804 5.32283 5.41536 5.60564 5.69254 5.90284 5.99412 6.23472 6.34850 6.48236 6.75494 6.78354 6.92493 7.09321 7.12652 7.27408 7.39994 7.44530 7.64441 7.89175 7.99385 8.06166 8.11683 8.29740 8.64375 8.70361 8.91153 8.99693 10.19825 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.004487 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.899590 B = 6238.651172 C = 7682.462259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.574 5.574 3 C 0.532 3.468 4 O -0.474 6.474 5 C 0.068 3.932 6 N -0.431 5.431 7 N -0.497 5.497 8 C 0.514 3.486 9 O -0.492 6.492 10 C -0.054 4.054 11 C -0.192 4.192 12 C -0.076 4.076 13 C -0.242 4.242 14 C -0.105 4.105 15 C -0.158 4.158 16 C 0.131 3.869 17 C -0.453 4.453 18 H 0.076 0.924 19 C 0.079 3.921 20 N -0.793 5.793 21 Si 0.900 3.100 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.703 3.297 26 O -0.514 6.514 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.417 0.583 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 12.595 -9.073 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.322 5.322 3 C 0.318 3.682 4 O -0.344 6.344 5 C -0.058 4.058 6 N -0.258 5.258 7 N -0.250 5.250 8 C 0.302 3.698 9 O -0.360 6.360 10 C -0.095 4.095 11 C -0.194 4.194 12 C -0.095 4.095 13 C -0.261 4.261 14 C -0.123 4.123 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.482 4.482 18 H 0.094 0.906 19 C -0.139 4.139 20 N -0.418 5.418 21 Si 0.724 3.276 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.181 1.181 25 C 0.404 3.596 26 O -0.383 6.383 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.259 0.741 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.288 12.362 -8.227 15.025 hybrid contribution -0.478 -0.409 -0.705 0.945 sum -2.767 11.954 -8.933 15.177 Atomic orbital electron populations 1.21860 0.74640 1.04437 1.04231 1.46233 1.09602 1.07668 1.68667 1.20701 0.88471 0.84755 0.74229 1.90815 1.78838 1.17816 1.46926 1.22723 0.96171 0.79948 1.06998 1.45748 0.99994 1.01580 1.78470 1.45390 1.27248 1.37427 1.14956 1.22301 0.85480 0.80302 0.81731 1.90729 1.50460 1.62808 1.32016 1.20224 0.93645 0.95602 1.00039 1.18956 1.03243 1.03461 0.93762 1.20286 0.97788 0.97504 0.93883 1.20296 1.06362 1.02297 0.97189 1.20694 0.97405 0.96448 0.97768 1.21312 1.00907 1.02101 0.93437 1.17343 0.89014 0.89201 0.91557 1.19530 1.20996 0.94724 1.12985 0.90566 1.25872 0.96732 0.96894 0.94417 1.69812 1.34719 1.04808 1.32463 0.86429 0.82390 0.79098 0.79693 1.19447 1.20094 1.18138 1.15840 0.81076 0.84454 0.78258 1.91063 1.74381 1.20031 1.52850 0.88678 0.90239 0.90106 0.85688 0.85645 0.74115 0.89707 0.87769 0.89659 0.89617 0.89542 0.86483 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.76 59.85 0.64 1.52 16 2 N -0.57 -7.25 3.00 -128.17 -0.39 -7.63 16 3 C 0.53 5.96 8.32 -10.56 -0.09 5.88 16 4 O -0.47 -6.06 17.51 5.60 0.10 -5.96 16 5 C 0.07 0.63 7.88 -4.32 -0.03 0.60 16 6 N -0.43 -5.92 3.41 -65.74 -0.22 -6.14 16 7 N -0.50 -6.92 6.35 31.22 0.20 -6.72 16 8 C 0.51 9.59 7.53 -10.98 -0.08 9.51 16 9 O -0.49 -11.71 16.31 5.56 0.09 -11.62 16 10 C -0.05 -0.97 5.18 -29.03 -0.15 -1.12 16 11 C -0.19 -4.46 4.43 -103.92 -0.46 -4.92 16 12 C -0.08 -1.69 9.66 -39.66 -0.38 -2.07 16 13 C -0.24 -5.51 10.05 -39.28 -0.39 -5.90 16 14 C -0.10 -2.52 10.02 -39.66 -0.40 -2.92 16 15 C -0.16 -4.21 8.69 -38.87 -0.34 -4.55 16 16 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 17 C -0.45 -12.04 8.14 -37.74 -0.31 -12.34 16 18 H 0.08 2.02 6.67 -52.49 -0.35 1.67 16 19 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 20 N -0.79 -20.50 10.96 55.55 0.61 -19.89 16 21 Si 0.90 19.61 29.59 -169.99 -5.03 14.58 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 25 C 0.70 11.32 8.35 -88.02 -0.74 10.58 16 26 O -0.51 -10.65 17.62 5.33 0.09 -10.56 16 27 H 0.09 0.76 7.64 -51.93 -0.40 0.36 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.42 3.98 8.83 -182.60 -1.61 2.37 16 33 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 35 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.12 3.22 6.21 -52.48 -0.33 2.89 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -36.23 345.32 -8.32 -44.55 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.56 Total: 5.13 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.41 Total: -0.93 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.20 Total: -40.39 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: 0.28 Total: -28.14 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.23 -8.32 -44.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777533627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.085 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds