Wall clock time and date at job start Fri Apr 10 2020 14:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 124.17586 * 2 1 4 4 O 1.21229 * 127.16277 * 0.02562 * 3 2 1 5 5 C 1.51581 * 105.68068 * 180.02562 * 3 2 1 6 6 N 1.47310 * 103.59502 * 0.02562 * 5 3 2 7 7 N 1.40099 * 126.68885 * 179.97438 * 6 5 3 8 8 C 1.34777 * 119.99877 * 105.00678 * 7 6 5 9 9 O 1.21280 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.00131 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47008 * 179.97438 * 10 8 7 12 12 C 1.37637 * 120.12210 * 264.99354 * 11 10 8 13 13 C 1.38617 * 120.24545 * 179.97438 * 12 11 10 14 14 C 1.38662 * 120.50068 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.24945 * 0.02562 * 14 13 12 16 16 C 1.40692 * 120.13017 * 84.72445 * 11 10 8 17 17 C 1.41402 * 120.24366 * 359.97438 * 16 11 10 18 18 H 1.07996 * 119.99692 * 333.89901 * 17 16 11 19 19 C 1.39952 * 119.99985 * 153.89962 * 17 16 11 20 20 N 1.30817 * 119.99956 * 343.70971 * 19 17 16 21 21 Si 1.86797 * 119.99651 * 163.71064 * 19 17 16 22 22 H 1.48495 * 109.47102 * 90.00226 * 21 19 17 23 23 H 1.48505 * 109.46943 * 210.00003 * 21 19 17 24 24 H 1.48500 * 109.47194 * 330.00031 * 21 19 17 25 25 C 1.33789 * 124.17385 * 180.31583 * 2 1 3 26 26 O 1.21536 * 123.77494 * 359.96969 * 25 2 1 27 27 H 1.09003 * 109.47029 * 359.96328 * 1 2 3 28 28 H 1.08999 * 109.47493 * 119.97169 * 1 2 3 29 29 H 1.08997 * 109.47071 * 239.97162 * 1 2 3 30 30 H 1.09004 * 110.59934 * 241.47520 * 5 3 2 31 31 H 1.08998 * 110.59993 * 118.53186 * 5 3 2 32 32 H 0.97000 * 120.00103 * 285.00207 * 7 6 5 33 33 H 1.08997 * 109.47024 * 59.99400 * 10 8 7 34 34 H 1.09005 * 109.46432 * 299.99626 * 10 8 7 35 35 H 1.07996 * 119.88263 * 0.02562 * 12 11 10 36 36 H 1.07999 * 119.75371 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.87457 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.12909 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00500 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1150 0.0000 4 8 1.8342 2.2635 0.0004 5 6 3.6596 0.6341 -0.0007 6 7 3.5338 -0.8336 -0.0016 7 7 4.5816 -1.7636 -0.0030 8 6 4.8857 -2.4377 1.1237 9 8 4.2527 -2.2390 2.1389 10 6 6.0133 -3.4377 1.1225 11 6 6.1460 -4.0468 2.4945 12 6 7.0463 -3.5274 3.3967 13 6 7.1700 -4.0854 4.6596 14 6 6.3908 -5.1713 5.0286 15 6 5.4850 -5.7076 4.1425 16 6 5.3461 -5.1450 2.8599 17 6 4.4134 -5.6831 1.9435 18 1 3.9989 -5.0588 1.1658 19 6 4.0273 -7.0245 2.0443 20 7 4.7401 -7.8585 2.7569 21 14 2.4944 -7.6241 1.1611 22 1 2.8582 -8.0894 -0.2014 23 1 1.8915 -8.7471 1.9231 24 1 1.5150 -6.5125 1.0595 25 6 2.2165 -1.1069 -0.0061 26 8 1.7602 -2.2333 -0.0118 27 1 -0.3633 1.0277 0.0007 28 1 -0.3634 -0.5134 -0.8902 29 1 -0.3633 -0.5143 0.8897 30 1 4.1782 0.9743 0.8957 31 1 4.1776 0.9749 -0.8971 32 1 5.0881 -1.9223 -0.8148 33 1 6.9436 -2.9359 0.8565 34 1 5.8026 -4.2218 0.3952 35 1 7.6580 -2.6814 3.1201 36 1 7.8787 -3.6712 5.3614 37 1 6.4953 -5.5979 6.0153 38 1 4.8794 -6.5537 4.4318 39 1 4.4724 -8.7881 2.8271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777533627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:53 Heat of formation + Delta-G solvation = -36.930492 kcal Electronic energy + Delta-G solvation = -26401.678989 eV Core-core repulsion = 22503.784405 eV Total energy + Delta-G solvation = -3897.894584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.44286 -40.84963 -39.78687 -39.08593 -37.46230 -36.59865 -35.50888 -34.02655 -33.11493 -31.34102 -29.39777 -28.25373 -27.95528 -26.80036 -24.09758 -22.90636 -22.79002 -21.51119 -21.12682 -19.56757 -19.05338 -18.57511 -17.95299 -17.78033 -17.28177 -17.16710 -16.75017 -16.26069 -16.07928 -15.48505 -15.42610 -15.23280 -15.06791 -14.93913 -14.78513 -14.38319 -13.81219 -13.56379 -13.55043 -13.39138 -12.91994 -12.79736 -12.72607 -12.51615 -12.40987 -12.15790 -11.63677 -11.31757 -11.24444 -11.22757 -11.03375 -11.02078 -10.82145 -10.20681 -9.21340 -9.16863 -8.61860 -6.30209 0.08858 0.46650 0.99958 1.15628 1.32273 1.43463 1.49483 1.51608 1.64911 1.79742 2.18416 2.76084 2.88064 2.99299 3.74929 3.77009 4.05787 4.13460 4.25494 4.35265 4.40283 4.41444 4.44077 4.60463 4.63304 4.70961 4.73946 4.82063 5.07520 5.20059 5.37575 5.55293 5.63072 5.77841 5.83537 6.03176 6.16421 6.18863 6.22822 6.32176 6.41836 6.74217 6.78030 6.98598 7.11339 7.40899 8.34062 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.004487 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.899590 B = 6238.651172 C = 7682.462259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.574 5.574 3 C 0.537 3.463 4 O -0.486 6.486 5 C 0.075 3.925 6 N -0.432 5.432 7 N -0.478 5.478 8 C 0.519 3.481 9 O -0.553 6.553 10 C -0.054 4.054 11 C -0.193 4.193 12 C -0.083 4.083 13 C -0.242 4.242 14 C -0.116 4.116 15 C -0.195 4.195 16 C 0.097 3.903 17 C -0.481 4.481 18 H 0.066 0.934 19 C 0.043 3.957 20 N -0.821 5.821 21 Si 0.960 3.040 22 H -0.252 1.252 23 H -0.264 1.264 24 H -0.281 1.281 25 C 0.695 3.305 26 O -0.573 6.573 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.177 0.823 32 H 0.442 0.558 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 14.943 -10.627 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.322 5.322 3 C 0.325 3.675 4 O -0.357 6.357 5 C -0.049 4.049 6 N -0.259 5.259 7 N -0.232 5.232 8 C 0.308 3.692 9 O -0.426 6.426 10 C -0.095 4.095 11 C -0.195 4.195 12 C -0.101 4.101 13 C -0.261 4.261 14 C -0.135 4.135 15 C -0.215 4.215 16 C 0.095 3.905 17 C -0.511 4.511 18 H 0.084 0.916 19 C -0.172 4.172 20 N -0.448 5.448 21 Si 0.782 3.218 22 H -0.176 1.176 23 H -0.188 1.188 24 H -0.206 1.206 25 C 0.396 3.604 26 O -0.447 6.447 27 H 0.135 0.865 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.194 0.806 32 H 0.289 0.711 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.659 14.761 -9.842 17.754 hybrid contribution -0.901 -0.957 -0.192 1.328 sum -1.560 13.804 -10.034 17.137 Atomic orbital electron populations 1.22065 0.73533 1.05812 1.04359 1.46333 1.10451 1.07187 1.68181 1.20930 0.89048 0.84091 0.73405 1.90825 1.79209 1.18083 1.47600 1.23074 0.95211 0.76492 1.10117 1.45920 0.99210 1.03261 1.77497 1.44877 1.26502 1.37121 1.14721 1.22188 0.84968 0.80165 0.81882 1.90716 1.52492 1.64870 1.34497 1.20269 0.96094 0.95917 0.97200 1.19486 1.01738 1.01987 0.96260 1.20782 0.97675 0.98277 0.93348 1.20755 1.05888 1.01246 0.98241 1.20965 0.97151 0.97122 0.98228 1.21298 1.02588 1.02863 0.94743 1.17723 0.90197 0.90971 0.91615 1.19585 1.22499 0.95359 1.13621 0.91618 1.26495 0.98834 0.96782 0.95135 1.69856 1.35980 1.05233 1.33713 0.85536 0.78595 0.77968 0.79668 1.17596 1.18836 1.20614 1.16178 0.82055 0.84365 0.77771 1.91022 1.75631 1.22386 1.55651 0.86542 0.89325 0.90973 0.84171 0.80579 0.71135 0.84397 0.87741 0.85481 0.86500 0.87869 0.88854 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.76 127.77 1.37 2.96 16 2 N -0.57 -13.90 3.00 -796.66 -2.39 -16.29 16 3 C 0.54 10.72 8.32 87.94 0.73 11.46 16 4 O -0.49 -11.20 17.51 -2.87 -0.05 -11.25 16 5 C 0.07 1.11 7.88 85.76 0.68 1.78 16 6 N -0.43 -10.94 3.41 -480.32 -1.64 -12.57 16 7 N -0.48 -12.13 6.35 -173.53 -1.10 -13.24 16 8 C 0.52 18.62 7.53 87.66 0.66 19.28 16 9 O -0.55 -26.31 16.31 -3.03 -0.05 -26.36 16 10 C -0.05 -1.83 5.18 29.10 0.15 -1.68 16 11 C -0.19 -8.78 4.43 -19.41 -0.09 -8.86 16 12 C -0.08 -3.45 9.66 22.22 0.21 -3.24 16 13 C -0.24 -10.55 10.05 22.46 0.23 -10.32 16 14 C -0.12 -5.65 10.02 22.22 0.22 -5.43 16 15 C -0.20 -10.81 8.69 22.73 0.20 -10.61 16 16 C 0.10 5.29 5.56 -21.29 -0.12 5.17 16 17 C -0.48 -26.57 8.14 23.46 0.19 -26.38 16 18 H 0.07 3.64 6.67 -2.91 -0.02 3.62 16 19 C 0.04 2.24 5.16 85.26 0.44 2.68 16 20 N -0.82 -44.16 10.96 21.83 0.24 -43.92 16 21 Si 0.96 41.73 29.59 68.60 2.03 43.76 16 22 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 25 C 0.69 22.05 8.35 179.44 1.50 23.55 16 26 O -0.57 -24.41 17.62 -3.83 -0.07 -24.47 16 27 H 0.12 1.70 7.64 -2.39 -0.02 1.68 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.18 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.44 6.89 8.83 -213.32 -1.88 5.00 16 33 H 0.14 3.14 8.05 -2.39 -0.02 3.12 16 34 H 0.10 3.59 7.08 -2.38 -0.02 3.57 16 35 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.09 5.46 6.21 -2.91 -0.02 5.45 16 39 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -84.27 345.32 2.57 -81.70 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.77 Total: 22.28 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.38 Total: 0.36 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -4.89 Total: -86.02 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.17 Total: -62.08 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -84.27 2.57 -81.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777533627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.769 kcal (2) G-P(sol) polarization free energy of solvation -84.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds