Wall clock time and date at job start Fri Apr 10 2020 14:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47058 * 126.30585 * 2 1 4 4 C 1.54062 * 110.11218 * 150.93711 * 3 2 1 5 5 C 1.55608 * 104.29734 * 45.19822 * 4 3 2 6 6 H 1.09004 * 111.20132 * 79.96478 * 5 4 3 7 7 C 1.50702 * 111.16889 * 204.21974 * 5 4 3 8 8 O 1.21282 * 119.99965 * 27.79286 * 7 5 4 9 9 N 1.34770 * 120.00215 * 207.79386 * 7 5 4 10 10 C 1.46500 * 120.00337 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47138 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.97049 * 53.32191 * 11 10 9 13 13 C 1.53947 * 113.76740 * 184.99914 * 11 10 9 14 14 C 1.53949 * 86.29329 * 137.90874 * 13 11 10 15 15 N 1.47578 * 113.76967 * 281.48921 * 11 10 9 16 16 C 1.36946 * 134.49165 * 41.06379 * 15 11 10 17 17 H 1.08000 * 119.99381 * 353.47969 * 16 15 11 18 18 C 1.38808 * 120.00044 * 173.48036 * 16 15 11 19 19 N 1.31617 * 119.99961 * 5.06665 * 18 16 15 20 20 Si 1.86802 * 120.00078 * 185.06481 * 18 16 15 21 21 H 1.48503 * 109.47040 * 94.98659 * 20 18 16 22 22 H 1.48494 * 109.47271 * 214.99002 * 20 18 16 23 23 H 1.48504 * 109.46999 * 334.98920 * 20 18 16 24 24 S 1.67005 * 126.29689 * 179.97438 * 2 1 3 25 25 O 1.42098 * 105.13680 * 68.63484 * 24 2 1 26 26 O 1.42100 * 105.26697 * 299.00211 * 24 2 1 27 27 H 1.08998 * 109.46966 * 270.04738 * 1 2 3 28 28 H 1.08998 * 109.46656 * 30.04007 * 1 2 3 29 29 H 1.09000 * 109.47238 * 150.04363 * 1 2 3 30 30 H 1.09005 * 109.35478 * 271.11065 * 3 2 1 31 31 H 1.09000 * 109.35928 * 30.75129 * 3 2 1 32 32 H 1.09004 * 110.46264 * 286.49791 * 4 3 2 33 33 H 1.08997 * 110.47148 * 163.90524 * 4 3 2 34 34 H 0.97002 * 119.99890 * 359.97438 * 9 7 5 35 35 H 1.09006 * 109.46526 * 299.99908 * 10 9 7 36 36 H 1.08994 * 109.46850 * 59.99666 * 10 9 7 37 37 H 1.08998 * 113.74121 * 252.25184 * 13 11 10 38 38 H 1.08998 * 113.74648 * 23.56308 * 13 11 10 39 39 H 1.08997 * 113.77379 * 90.69252 * 14 13 11 40 40 H 1.08997 * 113.77072 * 222.09722 * 14 13 11 41 41 H 0.97003 * 119.99925 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1851 0.0000 4 6 3.6684 0.8633 0.7028 5 6 4.0863 -0.5179 0.1203 6 1 4.5450 -0.4088 -0.8625 7 6 5.0014 -1.2527 1.0656 8 8 4.9324 -1.0474 2.2589 9 7 5.8966 -2.1382 0.5850 10 6 6.7859 -2.8530 1.5039 11 6 7.6958 -3.7902 0.7074 12 1 8.2337 -3.2821 -0.0929 13 6 8.5901 -4.6824 1.5872 14 6 8.2481 -5.8196 0.6075 15 7 7.0369 -5.0409 0.2838 16 6 5.7988 -5.3535 -0.2109 17 1 5.0311 -4.5957 -0.2630 18 6 5.5306 -6.6443 -0.6454 19 7 6.4314 -7.5913 -0.4903 20 14 3.8913 -7.0373 -1.4502 21 1 4.0306 -6.9489 -2.9260 22 1 3.4718 -8.4111 -1.0739 23 1 2.8682 -6.0640 -0.9904 24 16 2.4536 -1.3460 0.0006 25 8 2.2705 -1.9414 -1.2765 26 8 2.1395 -2.0405 1.1999 27 1 -0.3633 0.0008 1.0277 28 1 -0.3632 0.8896 -0.5145 29 1 -0.3634 -0.8904 -0.5131 30 1 2.5336 1.4880 -1.0283 31 1 1.8375 1.9996 0.5258 32 1 3.5238 0.7943 1.7809 33 1 4.4169 1.6193 0.4653 34 1 5.9516 -2.3027 -0.3694 35 1 7.3947 -2.1345 2.0527 36 1 6.1900 -3.4358 2.2063 37 1 9.6417 -4.3957 1.5768 38 1 8.2008 -4.8380 2.5933 39 1 8.9479 -5.9091 -0.2234 40 1 8.0407 -6.7721 1.0951 41 1 6.2441 -8.4933 -0.7943 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038802890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:14 Heat of formation + Delta-G solvation = -64.190066 kcal Electronic energy + Delta-G solvation = -25737.608909 eV Core-core repulsion = 21973.976212 eV Total energy + Delta-G solvation = -3763.632697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13026 -39.68385 -38.39014 -38.14347 -37.23542 -35.72196 -34.33145 -34.13380 -30.24416 -29.80306 -28.22089 -26.50240 -25.32418 -24.10676 -23.10855 -21.92722 -20.94678 -20.23951 -19.12096 -18.53957 -18.35396 -17.86422 -17.25694 -17.15254 -16.74455 -16.29181 -15.92580 -15.68566 -15.58445 -15.38630 -14.90774 -14.72917 -14.35652 -14.17373 -13.91667 -13.67818 -13.46955 -13.36062 -13.34521 -12.99162 -12.96819 -12.72519 -12.64819 -12.47080 -12.32995 -12.24026 -11.95301 -11.76436 -11.57459 -11.45703 -11.05106 -10.88035 -10.21159 -10.05846 -8.89869 -7.95171 -5.24090 -1.23699 1.31458 1.35615 1.37775 1.38660 1.45958 1.84219 2.35899 2.40824 2.76585 3.06997 3.25823 3.35506 3.39394 3.55794 3.85146 3.97496 4.04995 4.08503 4.28251 4.34235 4.55934 4.59680 4.68946 4.70310 4.77793 4.85248 4.85598 4.94998 5.00896 5.06283 5.08583 5.26855 5.31673 5.54638 5.58417 5.74416 5.95243 6.27369 6.90643 6.93100 7.59811 8.55400 9.22051 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.005083 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.587317 B = 5507.722003 C = 7046.891378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.993 5.993 3 C 0.075 3.925 4 C -0.104 4.104 5 C -0.577 4.577 6 H 0.207 0.793 7 C 0.528 3.472 8 O -0.551 6.551 9 N -0.710 5.710 10 C 0.125 3.875 11 C 0.130 3.870 12 H 0.080 0.920 13 C -0.128 4.128 14 C 0.152 3.848 15 N -0.632 5.632 16 C -0.217 4.217 17 H 0.074 0.926 18 C -0.058 4.058 19 N -0.944 5.944 20 Si 0.942 3.058 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.285 1.285 24 S 2.562 3.438 25 O -0.983 6.983 26 O -0.993 6.993 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.412 0.588 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 24.052 -0.430 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.839 5.839 3 C -0.050 4.050 4 C -0.144 4.144 5 C -0.691 4.691 6 H 0.224 0.776 7 C 0.312 3.688 8 O -0.429 6.429 9 N -0.361 5.361 10 C 0.001 3.999 11 C 0.024 3.976 12 H 0.097 0.903 13 C -0.167 4.167 14 C 0.027 3.973 15 N -0.359 5.359 16 C -0.346 4.346 17 H 0.092 0.908 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.211 1.211 24 S 2.659 3.341 25 O -0.972 6.972 26 O -0.982 6.982 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.109 0.891 33 H 0.176 0.824 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.268 22.984 0.239 23.378 hybrid contribution -0.664 -0.798 -0.970 1.420 sum -4.931 22.186 -0.730 22.740 Atomic orbital electron populations 1.21529 0.74528 1.04362 1.02583 1.56993 1.14514 1.20823 1.91603 1.22487 0.88526 0.89750 1.04196 1.22912 0.98211 0.91359 1.01885 1.30851 1.16312 1.11480 1.10453 0.77580 1.19407 0.81247 0.79977 0.88198 1.90706 1.69827 1.65708 1.16646 1.46043 1.36891 1.40973 1.12174 1.21759 0.91732 0.94249 0.92205 1.22761 0.91656 0.88185 0.95027 0.90273 1.23570 0.99712 0.95428 0.97969 1.22144 0.86097 0.95218 0.93820 1.46400 1.09309 1.04206 1.75955 1.19142 0.88225 0.94791 1.32417 0.90815 1.25348 1.00408 0.96507 1.02948 1.69961 1.35411 1.01173 1.52766 0.85606 0.80727 0.77227 0.79309 1.20531 1.21508 1.21064 1.06517 0.78734 0.74842 0.74009 1.93592 1.84673 1.75947 1.43011 1.93585 1.82353 1.72990 1.49276 0.92088 0.86757 0.92457 0.87199 0.85251 0.89055 0.82416 0.75231 0.88551 0.93941 0.88269 0.90352 0.95579 0.94756 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 11.38 127.77 1.45 3.26 16 2 N -0.99 -19.88 3.72 -535.83 -1.99 -21.87 16 3 C 0.07 0.75 6.82 86.63 0.59 1.34 16 4 C -0.10 -1.38 6.14 31.85 0.20 -1.19 16 5 C -0.58 -12.50 3.71 30.75 0.11 -12.39 16 6 H 0.21 2.64 8.14 -2.38 -0.02 2.62 16 7 C 0.53 16.48 6.80 87.66 0.60 17.08 16 8 O -0.55 -20.65 15.93 -3.04 -0.05 -20.70 16 9 N -0.71 -22.59 5.51 -463.08 -2.55 -25.14 16 10 C 0.12 4.25 5.54 86.38 0.48 4.73 16 11 C 0.13 4.62 4.33 45.09 0.20 4.82 16 12 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.13 -4.29 7.86 31.26 0.25 -4.04 16 14 C 0.15 6.96 7.43 86.48 0.64 7.60 16 15 N -0.63 -30.97 3.57 -694.21 -2.48 -33.45 16 16 C -0.22 -12.20 10.50 84.03 0.88 -11.32 16 17 H 0.07 4.07 7.79 -2.91 -0.02 4.05 16 18 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 19 N -0.94 -57.91 11.51 21.65 0.25 -57.66 16 20 Si 0.94 48.84 29.56 68.60 2.03 50.87 16 21 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 23 H -0.28 -14.99 7.11 99.48 0.71 -14.29 16 24 S 2.56 79.63 5.83 -56.49 -0.33 79.30 16 25 O -0.98 -36.76 18.13 -127.76 -2.32 -39.08 16 26 O -0.99 -41.59 17.75 -127.76 -2.27 -43.85 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 1.64 7.28 -2.38 -0.02 1.62 16 33 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.41 12.00 8.47 -92.71 -0.79 11.22 16 35 H 0.10 2.72 8.14 -2.38 -0.02 2.71 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.03 1.79 7.35 -2.39 -0.02 1.78 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -89.48 353.87 -3.59 -93.08 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.25 Total: 11.60 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.86 Total: 6.92 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -6.78 Total: -138.13 kcal Atomic # 8 Polarization: -99.01 SS G_CDS: -4.63 Total: -103.64 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Atomic # 16 Polarization: 79.63 SS G_CDS: -0.33 Total: 79.30 kcal Total: -89.48 -3.59 -93.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038802890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.888 kcal (2) G-P(sol) polarization free energy of solvation -89.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds