Wall clock time and date at job start Fri Apr 10 2020 14:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34561 * 119.50969 * 2 1 4 4 O 1.21230 * 120.01464 * 4.38953 * 3 2 1 5 5 C 1.50807 * 119.96909 * 184.40857 * 3 2 1 6 6 C 1.53042 * 109.18294 * 325.77038 * 5 3 2 7 7 H 1.08996 * 109.46258 * 166.69798 * 6 5 3 8 8 C 1.50701 * 109.46122 * 286.67532 * 6 5 3 9 9 O 1.21292 * 119.99554 * 100.00722 * 8 6 5 10 10 N 1.34777 * 120.00427 * 280.00144 * 8 6 5 11 11 C 1.39931 * 120.00315 * 185.09356 * 10 8 6 12 12 C 1.39287 * 119.94874 * 213.04721 * 11 10 8 13 13 C 1.38487 * 120.42854 * 179.74549 * 12 11 10 14 14 C 1.37681 * 120.32516 * 0.22563 * 13 12 11 15 15 C 1.40746 * 119.88115 * 0.02643 * 14 13 12 16 16 C 1.41407 * 120.20521 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99666 * 209.19063 * 16 15 14 18 18 C 1.39927 * 120.00472 * 29.18893 * 16 15 14 19 19 N 1.30830 * 119.99798 * 15.64320 * 18 16 15 20 20 Si 1.86799 * 120.00310 * 195.64788 * 18 16 15 21 21 H 1.48504 * 109.46902 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47317 * 119.99854 * 20 18 16 23 23 H 1.48501 * 109.47126 * 240.00240 * 20 18 16 24 24 C 1.38245 * 119.94851 * 33.29805 * 11 10 8 25 25 N 1.46411 * 109.52123 * 46.69166 * 6 5 3 26 26 C 1.34286 * 120.92993 * 324.14612 * 25 6 5 27 27 O 1.21537 * 119.21209 * 185.66388 * 26 25 6 28 28 H 1.09003 * 109.46730 * 89.99954 * 1 2 3 29 29 H 1.08994 * 109.47439 * 209.99877 * 1 2 3 30 30 H 1.09004 * 109.47269 * 330.00691 * 1 2 3 31 31 H 1.08997 * 109.51874 * 205.85703 * 5 3 2 32 32 H 1.09005 * 109.51553 * 85.68077 * 5 3 2 33 33 H 0.97000 * 119.99147 * 5.09390 * 10 8 6 34 34 H 1.07998 * 119.78668 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.83702 * 180.25599 * 13 12 11 36 36 H 1.07995 * 120.06024 * 180.02562 * 14 13 12 37 37 H 0.97007 * 119.99779 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.15671 * 359.97438 * 24 11 10 39 39 H 0.96999 * 119.53273 * 144.11794 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1278 1.1710 0.0000 4 8 1.5156 2.2143 0.0803 5 6 3.6324 1.1850 -0.1004 6 6 4.1966 -0.0352 0.6309 7 1 5.2465 -0.1631 0.3676 8 6 4.0734 0.1698 2.1188 9 8 3.1654 -0.3531 2.7298 10 7 4.9721 0.9339 2.7705 11 6 4.9214 1.0384 4.1650 12 6 5.2943 2.2274 4.7873 13 6 5.2429 2.3435 6.1663 14 6 4.8266 1.2821 6.9382 15 6 4.4517 0.0727 6.3237 16 6 4.0235 -1.0219 7.1099 17 1 4.1829 -2.0319 6.7618 18 6 3.3934 -0.7968 8.3388 19 7 2.9253 0.3907 8.6260 20 14 3.2208 -2.1915 9.5695 21 1 3.8279 -3.4250 9.0079 22 1 3.9150 -1.8275 10.8308 23 1 1.7819 -2.4309 9.8476 24 6 4.5061 -0.0404 4.9232 25 7 3.4467 -1.2302 0.2393 26 6 2.1266 -1.1692 0.0005 27 8 1.5158 -2.1964 -0.2208 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5137 31 1 4.0195 2.0952 0.3575 32 1 3.9277 1.1499 -1.1491 33 1 5.6541 1.4115 2.2728 34 1 5.6214 3.0658 4.1902 35 1 5.5304 3.2712 6.6386 36 1 4.7877 1.3775 8.0132 37 1 2.4881 0.5467 9.4778 38 1 4.2202 -0.9640 4.4419 39 1 3.9100 -2.0778 0.1507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181132575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:34 Heat of formation + Delta-G solvation = -61.507436 kcal Electronic energy + Delta-G solvation = -26456.998474 eV Core-core repulsion = 22558.038154 eV Total energy + Delta-G solvation = -3898.960321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05598 -39.80858 -38.93538 -37.44985 -35.89515 -35.06894 -34.59897 -33.14317 -31.22724 -29.87952 -28.77333 -27.71174 -25.39337 -25.03620 -23.74264 -21.96938 -21.00323 -20.21068 -19.05012 -18.48081 -18.13184 -17.41380 -17.14841 -16.41198 -15.87993 -15.58468 -15.28328 -15.14686 -14.75196 -14.60598 -14.39472 -14.20269 -13.72959 -13.21328 -13.16751 -12.92061 -12.77376 -12.54192 -12.29087 -12.16867 -11.73664 -11.41997 -11.13824 -10.80063 -10.73320 -10.55193 -10.45568 -10.35915 -9.99839 -9.82377 -9.77380 -9.44989 -9.13189 -8.91793 -7.48075 -7.00165 -6.74443 -4.37844 1.59222 2.12473 2.38490 2.73959 2.77518 3.05695 3.09270 3.10134 3.15038 3.19278 3.40553 3.96065 3.98681 4.16222 4.53822 4.59097 4.64238 4.79372 4.97952 5.27215 5.32768 5.47356 5.63833 5.68613 5.97175 6.15753 6.30275 6.58445 6.58855 6.87317 6.95722 7.00651 7.13837 7.19871 7.38322 7.44022 7.63458 7.87050 7.99461 8.03116 8.04455 8.14938 8.46922 8.62329 8.88928 8.92320 10.22270 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.003815 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.261838 B = 7338.161346 C = 8165.861641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.567 5.567 3 C 0.522 3.478 4 O -0.495 6.495 5 C -0.148 4.148 6 C 0.122 3.878 7 H 0.135 0.865 8 C 0.477 3.523 9 O -0.491 6.491 10 N -0.660 5.660 11 C 0.147 3.853 12 C -0.258 4.258 13 C -0.092 4.092 14 C -0.166 4.166 15 C 0.122 3.878 16 C -0.461 4.461 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.207 4.207 25 N -0.706 5.706 26 C 0.724 3.276 27 O -0.554 6.554 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.399 0.601 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.280 0.720 38 H 0.106 0.894 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 1.371 -16.303 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.312 5.312 3 C 0.310 3.690 4 O -0.367 6.367 5 C -0.189 4.189 6 C 0.011 3.989 7 H 0.153 0.847 8 C 0.260 3.740 9 O -0.364 6.364 10 N -0.305 5.305 11 C 0.056 3.944 12 C -0.279 4.279 13 C -0.111 4.111 14 C -0.186 4.186 15 C 0.119 3.881 16 C -0.491 4.491 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.421 5.421 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.229 4.229 25 N -0.365 5.365 26 C 0.426 3.574 27 O -0.428 6.428 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.017 1.245 -15.772 16.107 hybrid contribution 0.427 -0.508 0.458 0.807 sum 3.445 0.737 -15.315 15.715 Atomic orbital electron populations 1.21823 0.75691 1.05001 1.03205 1.45802 1.10140 1.06127 1.69143 1.20728 0.90471 0.83214 0.74563 1.90754 1.69835 1.31238 1.44827 1.22250 0.91719 1.00123 1.04813 1.21100 0.99140 0.86095 0.92525 0.84747 1.20922 0.83046 0.80749 0.89311 1.90853 1.31415 1.46367 1.67719 1.43388 1.31945 1.48108 1.07031 1.17415 1.02589 0.94941 0.79493 1.20026 1.17482 0.95606 0.94790 1.20466 1.00143 0.97561 0.92924 1.21279 1.03707 0.94210 0.99407 1.17488 0.87544 0.92869 0.90225 1.19556 1.33657 0.94189 1.01670 0.90440 1.25874 0.93167 0.96624 0.98454 1.69829 1.26901 1.22813 1.22578 0.86263 0.78667 0.81755 0.80051 1.18414 1.19708 1.19984 1.20959 1.10948 0.97441 0.93519 1.44720 1.06933 1.12443 1.72364 1.15482 0.81750 0.83324 0.76851 1.90984 1.65609 1.32266 1.53925 0.91243 0.89265 0.89273 0.85186 0.85535 0.76654 0.89125 0.88909 0.86760 0.90943 0.87609 0.73291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.02 59.84 0.60 1.66 16 2 N -0.57 -7.87 2.95 -128.45 -0.38 -8.25 16 3 C 0.52 6.90 7.16 -11.03 -0.08 6.82 16 4 O -0.49 -7.93 16.60 5.60 0.09 -7.84 16 5 C -0.15 -1.21 5.71 -27.81 -0.16 -1.37 16 6 C 0.12 1.11 3.64 -69.11 -0.25 0.86 16 7 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.48 7.34 6.45 -10.98 -0.07 7.27 16 9 O -0.49 -10.45 13.82 5.55 0.08 -10.38 16 10 N -0.66 -10.05 5.34 -9.91 -0.05 -10.10 16 11 C 0.15 3.12 6.28 -83.77 -0.53 2.59 16 12 C -0.26 -5.37 9.97 -39.10 -0.39 -5.76 16 13 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 14 C -0.17 -4.28 8.66 -38.84 -0.34 -4.61 16 15 C 0.12 3.29 5.52 -106.85 -0.59 2.70 16 16 C -0.46 -12.57 9.04 -37.74 -0.34 -12.91 16 17 H 0.08 2.06 7.89 -52.48 -0.41 1.65 16 18 C 0.08 1.96 5.15 -17.35 -0.09 1.87 16 19 N -0.80 -21.10 11.15 55.55 0.62 -20.49 16 20 Si 0.91 19.17 29.59 -169.99 -5.03 14.15 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C -0.21 -5.18 8.40 -38.69 -0.32 -5.51 16 25 N -0.71 -7.66 4.91 -60.11 -0.29 -7.95 16 26 C 0.72 10.33 7.69 -87.74 -0.67 9.65 16 27 O -0.55 -9.40 16.76 5.33 0.09 -9.31 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.16 7.55 -51.93 -0.39 0.77 16 30 H 0.09 1.14 7.33 -51.93 -0.38 0.76 16 31 H 0.13 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.10 8.82 -40.82 -0.36 3.74 16 34 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.11 3.03 6.43 -52.49 -0.34 2.69 16 37 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 38 H 0.11 2.73 6.39 -52.48 -0.34 2.40 16 39 H 0.43 3.75 8.90 -40.82 -0.36 3.38 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -36.76 336.33 -7.69 -44.45 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.25 Total: 9.86 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -3.63 Total: 0.78 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.11 Total: -46.78 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: 0.26 Total: -27.52 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.76 -7.69 -44.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181132575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.055 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds