Wall clock time and date at job start Fri Apr 10 2020 14:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34561 * 119.50969 * 2 1 4 4 O 1.21230 * 120.01464 * 4.38953 * 3 2 1 5 5 C 1.50807 * 119.96909 * 184.40857 * 3 2 1 6 6 C 1.53042 * 109.18294 * 325.77038 * 5 3 2 7 7 H 1.08996 * 109.46258 * 166.69798 * 6 5 3 8 8 C 1.50701 * 109.46122 * 286.67532 * 6 5 3 9 9 O 1.21292 * 119.99554 * 100.00722 * 8 6 5 10 10 N 1.34777 * 120.00427 * 280.00144 * 8 6 5 11 11 C 1.39931 * 120.00315 * 185.09356 * 10 8 6 12 12 C 1.39287 * 119.94874 * 213.04721 * 11 10 8 13 13 C 1.38487 * 120.42854 * 179.74549 * 12 11 10 14 14 C 1.37681 * 120.32516 * 0.22563 * 13 12 11 15 15 C 1.40746 * 119.88115 * 0.02643 * 14 13 12 16 16 C 1.41407 * 120.20521 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99666 * 209.19063 * 16 15 14 18 18 C 1.39927 * 120.00472 * 29.18893 * 16 15 14 19 19 N 1.30830 * 119.99798 * 15.64320 * 18 16 15 20 20 Si 1.86799 * 120.00310 * 195.64788 * 18 16 15 21 21 H 1.48504 * 109.46902 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47317 * 119.99854 * 20 18 16 23 23 H 1.48501 * 109.47126 * 240.00240 * 20 18 16 24 24 C 1.38245 * 119.94851 * 33.29805 * 11 10 8 25 25 N 1.46411 * 109.52123 * 46.69166 * 6 5 3 26 26 C 1.34286 * 120.92993 * 324.14612 * 25 6 5 27 27 O 1.21537 * 119.21209 * 185.66388 * 26 25 6 28 28 H 1.09003 * 109.46730 * 89.99954 * 1 2 3 29 29 H 1.08994 * 109.47439 * 209.99877 * 1 2 3 30 30 H 1.09004 * 109.47269 * 330.00691 * 1 2 3 31 31 H 1.08997 * 109.51874 * 205.85703 * 5 3 2 32 32 H 1.09005 * 109.51553 * 85.68077 * 5 3 2 33 33 H 0.97000 * 119.99147 * 5.09390 * 10 8 6 34 34 H 1.07998 * 119.78668 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.83702 * 180.25599 * 13 12 11 36 36 H 1.07995 * 120.06024 * 180.02562 * 14 13 12 37 37 H 0.97007 * 119.99779 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.15671 * 359.97438 * 24 11 10 39 39 H 0.96999 * 119.53273 * 144.11794 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1278 1.1710 0.0000 4 8 1.5156 2.2143 0.0803 5 6 3.6324 1.1850 -0.1004 6 6 4.1966 -0.0352 0.6309 7 1 5.2465 -0.1631 0.3676 8 6 4.0734 0.1698 2.1188 9 8 3.1654 -0.3531 2.7298 10 7 4.9721 0.9339 2.7705 11 6 4.9214 1.0384 4.1650 12 6 5.2943 2.2274 4.7873 13 6 5.2429 2.3435 6.1663 14 6 4.8266 1.2821 6.9382 15 6 4.4517 0.0727 6.3237 16 6 4.0235 -1.0219 7.1099 17 1 4.1829 -2.0319 6.7618 18 6 3.3934 -0.7968 8.3388 19 7 2.9253 0.3907 8.6260 20 14 3.2208 -2.1915 9.5695 21 1 3.8279 -3.4250 9.0079 22 1 3.9150 -1.8275 10.8308 23 1 1.7819 -2.4309 9.8476 24 6 4.5061 -0.0404 4.9232 25 7 3.4467 -1.2302 0.2393 26 6 2.1266 -1.1692 0.0005 27 8 1.5158 -2.1964 -0.2208 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5137 31 1 4.0195 2.0952 0.3575 32 1 3.9277 1.1499 -1.1491 33 1 5.6541 1.4115 2.2728 34 1 5.6214 3.0658 4.1902 35 1 5.5304 3.2712 6.6386 36 1 4.7877 1.3775 8.0132 37 1 2.4881 0.5467 9.4778 38 1 4.2202 -0.9640 4.4419 39 1 3.9100 -2.0778 0.1507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181132575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:33 Heat of formation + Delta-G solvation = -90.498587 kcal Electronic energy + Delta-G solvation = -26458.255625 eV Core-core repulsion = 22558.038154 eV Total energy + Delta-G solvation = -3900.217471 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.07041 -41.16235 -40.01880 -39.10374 -37.01816 -36.22232 -36.13182 -34.88319 -32.15624 -31.76073 -30.20188 -28.92810 -27.27427 -26.09485 -24.75835 -23.43437 -22.78062 -21.65455 -20.13403 -19.68662 -19.38033 -18.80732 -18.15927 -17.62561 -17.35172 -16.96755 -16.66639 -16.52890 -16.27041 -15.80982 -15.63570 -15.41410 -15.00136 -14.69909 -14.57420 -14.20096 -13.99785 -13.79919 -13.55621 -13.28847 -13.24714 -13.14254 -12.85513 -12.58056 -12.23858 -12.02914 -11.89371 -11.58755 -11.50819 -11.36845 -11.16504 -10.89818 -10.79535 -10.24370 -9.36975 -8.73472 -8.64325 -6.39534 0.57045 0.81385 0.97706 1.21905 1.33552 1.43489 1.48858 1.66306 1.75845 2.12318 2.18795 2.29393 2.72269 3.20638 3.34748 3.59981 3.71482 3.92971 4.14056 4.29957 4.36999 4.44043 4.46043 4.53210 4.63129 4.66632 5.01190 5.08205 5.09580 5.11277 5.20869 5.30765 5.71950 5.73147 5.83134 6.06265 6.08243 6.15541 6.33872 6.40184 6.58152 6.67255 6.92301 6.99316 7.01168 7.27548 8.34062 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.003815 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.261838 B = 7338.161346 C = 8165.861641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.576 5.576 3 C 0.509 3.491 4 O -0.532 6.532 5 C -0.139 4.139 6 C 0.137 3.863 7 H 0.207 0.793 8 C 0.470 3.530 9 O -0.558 6.558 10 N -0.644 5.644 11 C 0.157 3.843 12 C -0.242 4.242 13 C -0.094 4.094 14 C -0.193 4.193 15 C 0.088 3.912 16 C -0.507 4.507 17 H 0.064 0.936 18 C 0.035 3.965 19 N -0.832 5.832 20 Si 0.980 3.020 21 H -0.261 1.261 22 H -0.257 1.257 23 H -0.269 1.269 24 C -0.231 4.231 25 N -0.695 5.695 26 C 0.719 3.281 27 O -0.591 6.591 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.181 0.819 33 H 0.429 0.571 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.287 0.713 38 H 0.085 0.915 39 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 2.753 -18.629 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.322 5.322 3 C 0.300 3.700 4 O -0.407 6.407 5 C -0.179 4.179 6 C 0.028 3.972 7 H 0.224 0.776 8 C 0.256 3.744 9 O -0.434 6.434 10 N -0.291 5.291 11 C 0.063 3.937 12 C -0.263 4.263 13 C -0.113 4.113 14 C -0.213 4.213 15 C 0.085 3.915 16 C -0.537 4.537 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.459 5.459 20 Si 0.801 3.199 21 H -0.185 1.185 22 H -0.181 1.181 23 H -0.194 1.194 24 C -0.253 4.253 25 N -0.352 5.352 26 C 0.421 3.579 27 O -0.468 6.468 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.169 0.831 32 H 0.198 0.802 33 H 0.269 0.731 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 5.599 2.657 -18.152 19.181 hybrid contribution -0.331 -0.822 1.030 1.358 sum 5.269 1.835 -17.122 18.008 Atomic orbital electron populations 1.21848 0.76078 1.03914 1.04359 1.45999 1.10507 1.06684 1.68964 1.21827 0.92799 0.82184 0.73232 1.90739 1.71140 1.32193 1.46610 1.22505 0.87193 1.00125 1.08070 1.21433 1.02657 0.85826 0.87255 0.77649 1.22231 0.81446 0.78741 0.92005 1.90856 1.34062 1.48592 1.69893 1.43230 1.32846 1.48392 1.04634 1.17452 1.00099 0.93675 0.82427 1.20532 1.14816 0.96453 0.94466 1.20861 0.98819 0.97622 0.93991 1.21220 1.05971 0.95204 0.98936 1.17830 0.88526 0.93638 0.91475 1.19746 1.36248 0.93938 1.03735 0.91759 1.26691 0.92172 0.99320 0.99691 1.69878 1.27853 1.24688 1.23445 0.85195 0.78795 0.78215 0.77683 1.18475 1.18071 1.19404 1.20928 1.12763 0.98302 0.93302 1.44728 1.05823 1.13878 1.70820 1.15731 0.82734 0.82843 0.76638 1.90954 1.66735 1.33449 1.55672 0.89048 0.90569 0.90047 0.83108 0.80150 0.73086 0.84265 0.85955 0.88693 0.90259 0.89693 0.72088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.02 127.77 1.28 3.35 16 2 N -0.58 -15.62 2.95 -797.36 -2.35 -17.97 16 3 C 0.51 12.33 7.16 87.72 0.63 12.96 16 4 O -0.53 -16.46 16.60 -2.87 -0.05 -16.50 16 5 C -0.14 -1.51 5.71 29.90 0.17 -1.34 16 6 C 0.14 1.81 3.64 44.28 0.16 1.97 16 7 H 0.21 -0.02 8.14 -2.39 -0.02 -0.04 16 8 C 0.47 13.19 6.45 87.66 0.57 13.75 16 9 O -0.56 -23.86 13.82 -3.07 -0.04 -23.90 16 10 N -0.64 -17.13 5.34 -303.65 -1.62 -18.75 16 11 C 0.16 6.37 6.28 38.10 0.24 6.61 16 12 C -0.24 -9.27 9.97 22.58 0.23 -9.04 16 13 C -0.09 -4.13 10.02 22.20 0.22 -3.90 16 14 C -0.19 -10.25 8.66 22.75 0.20 -10.05 16 15 C 0.09 4.98 5.52 -21.31 -0.12 4.87 16 16 C -0.51 -29.43 9.04 23.46 0.21 -29.22 16 17 H 0.06 3.71 7.89 -2.91 -0.02 3.69 16 18 C 0.03 1.89 5.15 85.25 0.44 2.32 16 19 N -0.83 -46.14 11.15 21.82 0.24 -45.90 16 20 Si 0.98 40.91 29.59 68.60 2.03 42.94 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 C -0.23 -11.91 8.40 22.85 0.19 -11.72 16 25 N -0.69 -13.07 4.91 -462.65 -2.27 -15.33 16 26 C 0.72 19.83 7.69 179.34 1.38 21.21 16 27 O -0.59 -20.26 16.76 -3.83 -0.06 -20.32 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 2.13 7.55 -2.39 -0.02 2.11 16 30 H 0.08 2.19 7.33 -2.39 -0.02 2.18 16 31 H 0.15 1.15 8.07 -2.39 -0.02 1.13 16 32 H 0.18 0.19 8.14 -2.38 -0.02 0.18 16 33 H 0.43 6.15 8.82 -92.71 -0.82 5.33 16 34 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.09 5.29 6.43 -2.91 -0.02 5.27 16 37 H 0.29 14.33 8.30 -92.70 -0.77 13.56 16 38 H 0.08 4.64 6.39 -2.91 -0.02 4.62 16 39 H 0.44 6.43 8.90 -92.71 -0.83 5.60 16 Total: -1.00 -90.59 336.33 1.16 -89.42 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.51 Total: 24.55 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.79 Total: 1.77 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -6.00 Total: -97.96 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -0.15 Total: -60.73 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -90.59 1.16 -89.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181132575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.074 kcal (2) G-P(sol) polarization free energy of solvation -90.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds