Wall clock time and date at job start Fri Apr 10 2020 14:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48503 * 109.47175 * 269.99793 * 3 2 1 5 5 H 1.48507 * 109.47144 * 29.99766 * 3 2 1 6 6 H 1.48503 * 109.47248 * 149.99899 * 3 2 1 7 7 C 1.38946 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00341 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00072 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99963 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47363 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00407 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99683 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00138 * 179.97438 * 14 13 12 17 17 C 1.47747 * 125.82228 * 359.97438 * 16 14 13 18 18 C 1.54912 * 104.84004 * 204.25181 * 17 16 14 19 19 C 1.55158 * 101.58122 * 322.90317 * 18 17 16 20 20 C 1.47018 * 125.64867 * 179.97438 * 16 14 13 21 21 H 1.09006 * 109.88405 * 59.31839 * 20 16 14 22 22 C 1.50706 * 109.88302 * 298.31461 * 20 16 14 23 23 C 1.38664 * 120.41863 * 141.71639 * 22 20 16 24 24 C 1.38637 * 118.42141 * 180.02562 * 23 22 20 25 25 C 1.38231 * 119.15731 * 359.97438 * 24 23 22 26 26 N 1.31858 * 120.76402 * 0.02562 * 25 24 23 27 27 C 1.31885 * 121.72632 * 359.70066 * 26 25 24 28 28 H 0.97000 * 120.00561 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99577 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47379 * 60.00355 * 12 10 9 31 31 H 1.09003 * 109.47359 * 300.00596 * 12 10 9 32 32 H 0.97005 * 119.99288 * 359.97438 * 13 12 10 33 33 H 1.08993 * 110.43040 * 85.36813 * 17 16 14 34 34 H 1.09003 * 110.37820 * 323.10303 * 17 16 14 35 35 H 1.08999 * 111.00208 * 204.83130 * 18 17 16 36 36 H 1.08992 * 111.00549 * 80.97998 * 18 17 16 37 37 H 1.09001 * 110.72403 * 277.14409 * 19 18 17 38 38 H 1.08997 * 110.87252 * 153.93512 * 19 18 17 39 39 H 1.08001 * 120.79514 * 0.02562 * 23 22 20 40 40 H 1.07994 * 120.42255 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.61747 * 180.02562 * 25 24 23 42 42 H 1.07994 * 119.62155 * 180.31445 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0011 12 6 1.2440 -4.8629 0.0034 13 7 2.1960 -5.9764 0.0036 14 6 1.7469 -7.2471 0.0046 15 8 0.5514 -7.4693 0.0057 16 7 2.6227 -8.2715 0.0043 17 6 4.0952 -8.1502 0.0024 18 6 4.6020 -9.4788 -0.6123 19 6 3.5909 -10.4990 -0.0256 20 6 2.2715 -9.6991 0.0058 21 1 1.6740 -9.9348 -0.8749 22 6 1.4978 -10.0353 1.2546 23 6 0.4395 -10.9299 1.2054 24 6 -0.2439 -11.2087 2.3789 25 6 0.1500 -10.5905 3.5508 26 7 1.1615 -9.7448 3.5602 27 6 1.8376 -9.4599 2.4642 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3906 0.0016 30 1 0.6163 -4.9213 -0.8859 31 1 0.6183 -4.9200 0.8941 32 1 3.1497 -5.7991 0.0023 33 1 4.4688 -8.0360 1.0199 34 1 4.4057 -7.3051 -0.6120 35 1 5.6167 -9.7002 -0.2816 36 1 4.5441 -9.4529 -1.7003 37 1 3.8845 -10.7980 0.9806 38 1 3.4982 -11.3704 -0.6738 39 1 0.1543 -11.3983 0.2750 40 1 -1.0735 -11.9002 2.3775 41 1 -0.3770 -10.8026 4.4694 42 1 2.6637 -8.7660 2.5118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358317327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:05 Heat of formation + Delta-G solvation = -22.293825 kcal Electronic energy + Delta-G solvation = -26198.177818 eV Core-core repulsion = 22371.325111 eV Total energy + Delta-G solvation = -3826.852707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89970 -39.64486 -38.40148 -37.42020 -34.45454 -33.73827 -32.89597 -31.73469 -31.68875 -31.30815 -28.35738 -27.42713 -24.69578 -23.91413 -23.63687 -22.46861 -21.29226 -19.68050 -19.53844 -18.37943 -17.85893 -17.34259 -16.81305 -15.91489 -15.82386 -15.48719 -15.17480 -14.92273 -14.64185 -14.23259 -14.13957 -14.00428 -13.65630 -13.52979 -13.28406 -13.19788 -13.12455 -12.53683 -12.43438 -12.14915 -11.86167 -11.62249 -11.59377 -11.41054 -11.14442 -11.11808 -10.45308 -10.31216 -10.05088 -9.85205 -9.62720 -9.56828 -9.09884 -8.92215 -8.61757 -8.48203 -8.09039 -6.50345 -3.92398 1.00626 1.20550 2.60970 3.12284 3.22655 3.28073 3.35209 3.70467 3.75948 4.02290 4.14837 4.23978 4.34860 4.41996 4.55749 4.73133 4.75806 4.89483 4.90222 4.93469 5.09826 5.18348 5.21383 5.38361 5.40476 5.46393 5.57425 5.62570 5.71942 5.83636 5.90701 5.99690 6.01518 6.06964 6.10657 6.22003 6.60430 6.75699 7.12864 7.46898 7.91054 7.93323 8.15990 8.46177 8.77944 9.05574 9.40548 9.88344 10.66592 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002760 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.784898 B =10143.157373 C =10966.423979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.721 5.721 14 C 0.723 3.277 15 O -0.587 6.587 16 N -0.635 5.635 17 C 0.094 3.906 18 C -0.129 4.129 19 C -0.123 4.123 20 C 0.202 3.798 21 H 0.085 0.915 22 C -0.133 4.133 23 C -0.063 4.063 24 C -0.173 4.173 25 C 0.092 3.908 26 N -0.484 5.484 27 C 0.119 3.881 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -23.528 0.513 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.425 3.575 15 O -0.465 6.465 16 N -0.374 5.374 17 C -0.029 4.029 18 C -0.167 4.167 19 C -0.161 4.161 20 C 0.096 3.904 21 H 0.102 0.898 22 C -0.136 4.136 23 C -0.089 4.089 24 C -0.193 4.193 25 C -0.065 4.065 26 N -0.192 5.192 27 C -0.039 4.039 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.074 -22.972 1.309 23.367 hybrid contribution -0.193 0.666 -0.797 1.056 sum 3.880 -22.306 0.512 22.647 Atomic orbital electron populations 1.69612 1.06016 1.28519 1.49323 1.25323 0.95660 0.99923 0.96812 0.85816 0.79239 0.80518 0.78467 1.20280 1.20796 1.19308 1.19723 0.93447 0.81990 1.48253 0.87685 1.41782 1.09493 1.04441 1.62641 1.19734 0.88279 0.84974 0.85509 1.90484 1.13732 1.86863 1.57396 1.20791 0.91216 0.84861 1.03107 1.44787 1.11300 1.03086 1.78721 1.15335 0.84243 0.79935 0.78018 1.90922 1.13503 1.83782 1.58321 1.47657 1.05930 1.04480 1.79374 1.22419 0.80101 0.99040 1.01305 1.22761 0.99130 0.93704 1.01142 1.22722 0.92974 0.97880 1.02512 1.20152 0.95416 0.80153 0.94638 0.89755 1.21071 0.97644 0.98183 0.96678 1.21369 0.93265 0.95684 0.98613 1.22080 1.01292 1.02097 0.93794 1.22750 0.93421 0.92360 0.97946 1.67696 1.06994 1.13732 1.30803 1.22460 0.97647 0.96355 0.87389 0.91589 0.77023 0.90046 0.90072 0.75548 0.91190 0.90107 0.89481 0.90223 0.90232 0.89553 0.84986 0.84894 0.82995 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.05 55.50 0.72 -23.37 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 8 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.55 -13.78 5.29 -10.97 -0.06 -13.84 16 10 C 0.43 10.00 7.85 -10.99 -0.09 9.91 16 11 O -0.60 -15.36 15.24 5.55 0.08 -15.28 16 12 C 0.13 2.48 6.15 -5.19 -0.03 2.44 16 13 N -0.72 -12.63 5.49 -66.41 -0.36 -12.99 16 14 C 0.72 12.22 8.14 -86.92 -0.71 11.52 16 15 O -0.59 -11.84 16.18 5.29 0.09 -11.76 16 16 N -0.64 -7.99 2.35 -169.74 -0.40 -8.39 16 17 C 0.09 0.89 6.60 -2.35 -0.02 0.87 16 18 C -0.13 -0.84 7.09 -24.58 -0.17 -1.01 16 19 C -0.12 -0.83 6.47 -24.90 -0.16 -0.99 16 20 C 0.20 2.10 3.06 -68.10 -0.21 1.89 16 21 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 22 C -0.13 -1.56 4.10 -104.48 -0.43 -1.99 16 23 C -0.06 -0.66 9.83 -39.28 -0.39 -1.04 16 24 C -0.17 -1.70 10.11 -39.44 -0.40 -2.10 16 25 C 0.09 1.04 11.18 -17.54 -0.20 0.85 16 26 N -0.48 -6.79 10.36 -13.25 -0.14 -6.92 16 27 C 0.12 1.59 10.33 -17.55 -0.18 1.41 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.41 6.92 5.93 -40.82 -0.24 6.68 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.79 7.31 -51.93 -0.38 0.41 16 35 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.53 7.82 -51.93 -0.41 0.13 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.15 1.93 7.70 -52.49 -0.40 1.53 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -33.98 358.12 -8.39 -42.37 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -5.49 Total: 15.31 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -3.22 Total: 13.85 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.23 Total: -65.52 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.17 Total: -27.04 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.98 -8.39 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.076 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds