Wall clock time and date at job start Fri Apr 10 2020 14:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48503 * 109.47175 * 269.99793 * 3 2 1 5 5 H 1.48507 * 109.47144 * 29.99766 * 3 2 1 6 6 H 1.48503 * 109.47248 * 149.99899 * 3 2 1 7 7 C 1.38946 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00341 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00072 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99963 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47363 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00407 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99683 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00138 * 179.97438 * 14 13 12 17 17 C 1.47747 * 125.82228 * 359.97438 * 16 14 13 18 18 C 1.54912 * 104.84004 * 204.25181 * 17 16 14 19 19 C 1.55158 * 101.58122 * 322.90317 * 18 17 16 20 20 C 1.47018 * 125.64867 * 179.97438 * 16 14 13 21 21 H 1.09006 * 109.88405 * 59.31839 * 20 16 14 22 22 C 1.50706 * 109.88302 * 298.31461 * 20 16 14 23 23 C 1.38664 * 120.41863 * 141.71639 * 22 20 16 24 24 C 1.38637 * 118.42141 * 180.02562 * 23 22 20 25 25 C 1.38231 * 119.15731 * 359.97438 * 24 23 22 26 26 N 1.31858 * 120.76402 * 0.02562 * 25 24 23 27 27 C 1.31885 * 121.72632 * 359.70066 * 26 25 24 28 28 H 0.97000 * 120.00561 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99577 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47379 * 60.00355 * 12 10 9 31 31 H 1.09003 * 109.47359 * 300.00596 * 12 10 9 32 32 H 0.97005 * 119.99288 * 359.97438 * 13 12 10 33 33 H 1.08993 * 110.43040 * 85.36813 * 17 16 14 34 34 H 1.09003 * 110.37820 * 323.10303 * 17 16 14 35 35 H 1.08999 * 111.00208 * 204.83130 * 18 17 16 36 36 H 1.08992 * 111.00549 * 80.97998 * 18 17 16 37 37 H 1.09001 * 110.72403 * 277.14409 * 19 18 17 38 38 H 1.08997 * 110.87252 * 153.93512 * 19 18 17 39 39 H 1.08001 * 120.79514 * 0.02562 * 23 22 20 40 40 H 1.07994 * 120.42255 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.61747 * 180.02562 * 25 24 23 42 42 H 1.07994 * 119.62155 * 180.31445 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0011 12 6 1.2440 -4.8629 0.0034 13 7 2.1960 -5.9764 0.0036 14 6 1.7469 -7.2471 0.0046 15 8 0.5514 -7.4693 0.0057 16 7 2.6227 -8.2715 0.0043 17 6 4.0952 -8.1502 0.0024 18 6 4.6020 -9.4788 -0.6123 19 6 3.5909 -10.4990 -0.0256 20 6 2.2715 -9.6991 0.0058 21 1 1.6740 -9.9348 -0.8749 22 6 1.4978 -10.0353 1.2546 23 6 0.4395 -10.9299 1.2054 24 6 -0.2439 -11.2087 2.3789 25 6 0.1500 -10.5905 3.5508 26 7 1.1615 -9.7448 3.5602 27 6 1.8376 -9.4599 2.4642 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3906 0.0016 30 1 0.6163 -4.9213 -0.8859 31 1 0.6183 -4.9200 0.8941 32 1 3.1497 -5.7991 0.0023 33 1 4.4688 -8.0360 1.0199 34 1 4.4057 -7.3051 -0.6120 35 1 5.6167 -9.7002 -0.2816 36 1 4.5441 -9.4529 -1.7003 37 1 3.8845 -10.7980 0.9806 38 1 3.4982 -11.3704 -0.6738 39 1 0.1543 -11.3983 0.2750 40 1 -1.0735 -11.9002 2.3775 41 1 -0.3770 -10.8026 4.4694 42 1 2.6637 -8.7660 2.5118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358317327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:05 Heat of formation + Delta-G solvation = -46.063486 kcal Electronic energy + Delta-G solvation = -26199.208548 eV Core-core repulsion = 22371.325111 eV Total energy + Delta-G solvation = -3827.883437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88276 -40.81740 -40.07208 -38.55325 -36.26684 -35.36911 -33.82065 -33.39690 -32.57015 -32.53284 -29.31392 -28.86865 -26.48148 -24.90751 -24.51815 -23.37037 -22.07462 -21.35818 -20.83931 -20.10917 -19.33056 -18.20059 -17.78325 -17.41319 -16.99727 -16.86974 -16.58180 -16.37238 -16.02601 -15.62125 -15.44029 -15.23669 -14.96275 -14.44550 -14.18717 -14.16895 -13.98043 -13.93180 -13.67036 -13.55498 -13.17834 -13.15755 -12.90889 -12.46889 -12.25037 -12.14080 -12.11779 -11.70226 -11.58245 -11.39266 -10.71424 -10.58236 -10.47781 -10.31974 -10.11285 -9.96084 -9.54792 -8.52067 -6.02592 0.15437 0.36191 1.35534 1.40491 1.46220 1.56164 1.87153 2.06305 2.27031 2.78866 2.92802 3.14949 3.15798 3.45425 3.61461 3.67545 3.78405 3.98778 4.07599 4.12209 4.17661 4.20236 4.37180 4.40331 4.41054 4.54135 4.62452 4.71119 4.85004 4.91514 4.96799 5.10483 5.17194 5.23060 5.27622 5.32474 5.35851 5.37435 5.78565 5.90461 5.96964 6.46018 6.88000 7.01776 7.03059 7.39352 7.48305 7.91887 8.64962 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002760 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.784898 B =10143.157373 C =10966.423979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.143 3.857 13 N -0.723 5.723 14 C 0.720 3.280 15 O -0.624 6.624 16 N -0.630 5.630 17 C 0.084 3.916 18 C -0.117 4.117 19 C -0.111 4.111 20 C 0.195 3.805 21 H 0.085 0.915 22 C -0.139 4.139 23 C -0.071 4.071 24 C -0.166 4.166 25 C 0.075 3.925 26 N -0.518 5.518 27 C 0.095 3.905 28 H 0.280 0.720 29 H 0.398 0.602 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.409 0.591 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -25.059 -0.093 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.510 6.510 12 C 0.014 3.986 13 N -0.381 5.381 14 C 0.422 3.578 15 O -0.505 6.505 16 N -0.367 5.367 17 C -0.038 4.038 18 C -0.155 4.155 19 C -0.148 4.148 20 C 0.090 3.910 21 H 0.103 0.897 22 C -0.142 4.142 23 C -0.098 4.098 24 C -0.185 4.185 25 C -0.081 4.081 26 N -0.227 5.227 27 C -0.062 4.062 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.472 -24.548 0.699 24.962 hybrid contribution -0.329 1.042 -0.583 1.239 sum 4.143 -23.506 0.116 23.868 Atomic orbital electron populations 1.69682 1.07070 1.29678 1.49228 1.26151 0.96537 1.02740 0.95719 0.84856 0.77913 0.76370 0.78771 1.19430 1.19668 1.19382 1.19748 0.92992 0.83462 1.50442 0.89477 1.41829 1.09570 1.04595 1.63374 1.20329 0.88105 0.85786 0.83644 1.90459 1.15049 1.87510 1.58021 1.20554 0.91006 0.83298 1.03701 1.44716 1.10973 1.03158 1.79291 1.15446 0.84317 0.80220 0.77817 1.90882 1.15223 1.84333 1.60060 1.47708 1.06882 1.04576 1.77576 1.22691 0.78210 1.00928 1.01950 1.22763 1.00090 0.91314 1.01311 1.22725 0.90666 0.98105 1.03353 1.20468 0.97402 0.79104 0.94004 0.89749 1.21227 0.98235 0.98336 0.96419 1.21784 0.92646 0.95346 1.00008 1.22466 1.01522 1.01621 0.92892 1.23240 0.93069 0.92095 0.99718 1.67631 1.08356 1.15171 1.31574 1.22407 0.98201 0.97340 0.88244 0.91042 0.76766 0.89079 0.89719 0.75316 0.90728 0.90668 0.87057 0.89576 0.90043 0.86915 0.82440 0.81536 0.80785 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 42.08 29.55 68.60 2.03 44.11 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.09 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -28.68 5.29 -306.99 -1.62 -30.30 16 10 C 0.43 20.65 7.85 87.66 0.69 21.33 16 11 O -0.62 -32.64 15.24 -3.07 -0.05 -32.69 16 12 C 0.14 5.59 6.15 85.63 0.53 6.12 16 13 N -0.72 -25.69 5.49 -482.29 -2.65 -28.33 16 14 C 0.72 24.54 8.14 179.06 1.46 26.00 16 15 O -0.62 -25.39 16.18 -3.99 -0.06 -25.46 16 16 N -0.63 -15.59 2.35 -809.20 -1.90 -17.49 16 17 C 0.08 1.50 6.60 86.79 0.57 2.08 16 18 C -0.12 -1.20 7.09 31.99 0.23 -0.98 16 19 C -0.11 -1.21 6.47 31.78 0.21 -1.00 16 20 C 0.19 3.80 3.06 44.60 0.14 3.93 16 21 H 0.08 1.66 8.05 -2.38 -0.02 1.64 16 22 C -0.14 -3.17 4.10 -19.77 -0.08 -3.25 16 23 C -0.07 -1.36 9.83 22.47 0.22 -1.14 16 24 C -0.17 -2.92 10.11 22.36 0.23 -2.70 16 25 C 0.08 1.64 11.18 84.69 0.95 2.59 16 26 N -0.52 -14.72 10.36 -195.84 -2.03 -16.75 16 27 C 0.09 2.58 10.33 84.67 0.88 3.45 16 28 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 30 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 31 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.41 14.15 5.93 -92.70 -0.55 13.60 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.43 7.31 -2.39 -0.02 1.42 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.91 7.82 -2.39 -0.02 0.89 16 38 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.14 3.76 7.70 -2.91 -0.02 3.73 16 Total: -1.00 -74.56 358.12 1.06 -73.49 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -0.22 Total: 44.14 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 7.28 Total: 38.34 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -7.92 Total: -141.93 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -0.11 Total: -58.15 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.56 1.06 -73.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.431 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds