Wall clock time and date at job start Fri Apr 10 2020 14:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47215 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00212 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00018 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00172 * 180.02562 * 14 13 12 17 17 C 1.47028 * 125.64936 * 0.02562 * 16 14 13 18 18 C 1.54317 * 107.27426 * 181.02646 * 17 16 14 19 19 C 1.55160 * 102.94311 * 22.19014 * 18 17 16 20 20 H 1.08999 * 111.00535 * 82.57166 * 19 18 17 21 21 C 1.50700 * 111.00739 * 206.38939 * 19 18 17 22 22 C 1.38670 * 120.42011 * 239.72529 * 21 19 18 23 23 C 1.38632 * 118.42399 * 179.78022 * 22 21 19 24 24 C 1.38230 * 119.15728 * 0.50920 * 23 22 21 25 25 N 1.31852 * 120.76337 * 359.72916 * 24 23 22 26 26 C 1.31885 * 121.72850 * 359.97438 * 25 24 23 27 27 C 1.47430 * 125.64943 * 179.71888 * 16 14 13 28 28 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 30 30 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 31 31 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 32 32 H 0.97005 * 119.99723 * 359.97438 * 13 12 10 33 33 H 1.09006 * 109.87608 * 300.43985 * 17 16 14 34 34 H 1.08995 * 109.88445 * 61.44580 * 17 16 14 35 35 H 1.08995 * 110.72607 * 140.55130 * 18 17 16 36 36 H 1.09008 * 110.72128 * 263.65255 * 18 17 16 37 37 H 1.08004 * 120.78883 * 0.02562 * 22 21 19 38 38 H 1.07996 * 120.41767 * 180.21375 * 23 22 21 39 39 H 1.07997 * 119.61537 * 179.70074 * 24 23 22 40 40 H 1.08001 * 119.62212 * 180.02562 * 26 25 24 41 41 H 1.08997 * 110.36458 * 274.74034 * 27 16 14 42 42 H 1.08999 * 110.36643 * 37.06753 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0490 -3.7518 0.0246 14 6 7.3740 -3.9981 0.0307 15 8 8.1642 -3.0739 0.0313 16 7 7.8233 -5.2687 0.0351 17 6 6.9825 -6.4749 0.0333 18 6 7.9290 -7.6933 0.0663 19 6 9.2366 -7.1016 0.6557 20 1 9.1897 -7.0572 1.7438 21 6 10.4386 -7.8891 0.2016 22 6 11.2658 -8.5049 1.1287 23 6 12.3574 -9.2227 0.6650 24 6 12.5895 -9.2912 -0.6960 25 7 11.7842 -8.6887 -1.5486 26 6 10.7334 -8.0023 -1.1437 27 6 9.2392 -5.6795 0.0360 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3633 0.0059 30 1 5.9281 -1.8591 -0.8704 31 1 5.9199 -1.8544 0.9095 32 1 5.4186 -4.4891 0.0238 33 1 6.3404 -6.4803 0.9142 34 1 6.3728 -6.5005 -0.8698 35 1 7.5315 -8.4730 0.7159 36 1 8.0961 -8.0791 -0.9394 37 1 11.0621 -8.4305 2.1867 38 1 13.0208 -9.7179 1.3585 39 1 13.4405 -9.8443 -1.0651 40 1 10.0962 -7.5225 -1.8719 41 1 9.6266 -5.7077 -0.9825 42 1 9.8309 -4.9999 0.6492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573320459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:07 Heat of formation + Delta-G solvation = -20.103165 kcal Electronic energy + Delta-G solvation = -25300.748890 eV Core-core repulsion = 21473.991177 eV Total energy + Delta-G solvation = -3826.757713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94900 -40.03622 -38.60089 -37.59643 -34.52802 -33.89424 -33.55269 -32.41341 -31.80218 -30.50079 -28.98131 -27.52781 -24.82645 -24.14892 -23.65354 -22.96883 -20.85711 -19.87821 -19.65617 -18.83216 -17.97997 -17.66868 -16.94526 -16.23811 -15.97734 -15.52877 -15.33868 -15.04692 -14.87135 -14.34083 -14.32485 -14.14440 -13.83814 -13.65873 -13.46459 -13.20773 -13.02992 -12.88156 -12.53975 -12.43721 -12.15251 -12.05152 -11.89135 -11.56697 -11.23779 -11.17273 -10.64464 -10.19577 -10.14374 -10.06437 -9.82218 -9.70327 -9.33854 -9.03135 -8.77615 -8.55005 -8.30910 -6.41350 -3.93896 0.66291 0.86564 2.55064 2.99555 3.04412 3.12484 3.26035 3.36174 3.56744 3.93299 3.98799 4.03504 4.17180 4.26797 4.39327 4.48685 4.54192 4.58845 4.64416 4.75842 4.95388 5.00697 5.13704 5.14268 5.32971 5.40848 5.47205 5.52936 5.60006 5.65282 5.67831 5.73106 5.79167 5.84842 5.91682 6.09666 6.27712 6.62093 7.06033 7.44279 7.57701 7.99414 8.07185 8.43644 8.68215 8.81068 9.29289 9.62880 10.70744 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.041199 B = 0.002056 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.457009 B =13614.071102 C =13950.399198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.125 3.875 13 N -0.722 5.722 14 C 0.724 3.276 15 O -0.595 6.595 16 N -0.639 5.639 17 C 0.096 3.904 18 C -0.120 4.120 19 C -0.060 4.060 20 H 0.098 0.902 21 C -0.121 4.121 22 C -0.069 4.069 23 C -0.171 4.171 24 C 0.093 3.907 25 N -0.482 5.482 26 C 0.105 3.895 27 C 0.136 3.864 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.960 -16.913 2.048 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.380 5.380 14 C 0.426 3.574 15 O -0.474 6.474 16 N -0.378 5.378 17 C -0.027 4.027 18 C -0.158 4.158 19 C -0.080 4.080 20 H 0.116 0.884 21 C -0.123 4.123 22 C -0.095 4.095 23 C -0.191 4.191 24 C -0.064 4.064 25 N -0.190 5.190 26 C -0.052 4.052 27 C 0.012 3.988 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.246 0.754 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.011 -16.747 1.144 28.483 hybrid contribution 0.021 1.078 0.983 1.459 sum 23.031 -15.669 2.127 27.937 Atomic orbital electron populations 1.69619 1.05710 1.27815 1.48170 1.25069 0.95539 0.98182 0.97131 0.86668 0.79916 0.83741 0.79162 1.19373 1.19992 1.19204 1.19437 0.78949 0.96787 1.48670 0.86087 1.42115 1.07693 1.06132 1.65428 1.19644 0.88057 0.84875 0.84966 1.90531 1.69248 1.30931 1.55694 1.20822 0.93387 0.82811 1.03294 1.44756 1.05056 1.09357 1.78782 1.15312 0.82626 0.81480 0.78006 1.90914 1.55306 1.42190 1.58942 1.47430 1.07287 1.03839 1.79246 1.22056 0.93997 0.84070 1.02565 1.22730 0.93715 0.96993 1.02333 1.21332 0.91846 0.93678 1.01167 0.88404 1.20597 0.97302 0.99592 0.94856 1.21535 0.93355 0.94505 1.00126 1.22164 0.98788 1.00742 0.97372 1.22811 0.97704 0.96061 0.89825 1.67732 1.04101 1.07608 1.39596 1.22695 0.93821 0.94811 0.93850 1.22128 0.82169 0.93616 1.00861 0.91387 0.79211 0.89820 0.89844 0.75385 0.91018 0.90909 0.89489 0.90066 0.84681 0.84700 0.82790 0.82701 0.91371 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.89 13.96 55.50 0.77 -24.11 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.99 27.74 -169.99 -4.72 14.27 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.28 6.51 56.52 0.37 -4.91 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.38 5.09 -10.96 -0.06 -13.43 16 10 C 0.44 9.64 7.85 -10.98 -0.09 9.56 16 11 O -0.58 -14.56 15.24 5.55 0.08 -14.47 16 12 C 0.13 2.21 6.15 -5.19 -0.03 2.18 16 13 N -0.72 -11.91 5.49 -66.42 -0.36 -12.28 16 14 C 0.72 11.70 8.49 -86.93 -0.74 10.96 16 15 O -0.59 -11.47 16.60 5.28 0.09 -11.38 16 16 N -0.64 -7.75 3.32 -176.09 -0.59 -8.33 16 17 C 0.10 0.88 6.15 -3.06 -0.02 0.86 16 18 C -0.12 -0.78 6.36 -24.90 -0.16 -0.94 16 19 C -0.06 -0.42 3.29 -89.50 -0.29 -0.71 16 20 H 0.10 0.62 8.01 -51.93 -0.42 0.21 16 21 C -0.12 -0.86 5.01 -104.48 -0.52 -1.38 16 22 C -0.07 -0.42 9.83 -39.28 -0.39 -0.81 16 23 C -0.17 -0.98 10.11 -39.44 -0.40 -1.38 16 24 C 0.09 0.65 11.18 -17.55 -0.20 0.46 16 25 N -0.48 -4.51 10.36 -13.25 -0.14 -4.64 16 26 C 0.11 0.87 9.50 -17.55 -0.17 0.70 16 27 C 0.14 1.34 6.31 -2.40 -0.02 1.32 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.41 6.62 6.42 -40.82 -0.26 6.35 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.49 7.24 -51.92 -0.38 0.12 16 37 H 0.14 0.56 8.04 -52.48 -0.42 0.13 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.16 1.13 7.01 -52.49 -0.37 0.77 16 41 H 0.07 0.65 6.67 -51.93 -0.35 0.30 16 42 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -34.51 354.14 -8.19 -42.71 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.36 Total: 13.07 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -3.26 Total: 13.27 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.37 Total: -62.80 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.17 Total: -25.86 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.72 Total: 14.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.51 -8.19 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573320459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.603 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds