Wall clock time and date at job start Fri Apr 10 2020 14:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47215 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00212 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00018 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00172 * 180.02562 * 14 13 12 17 17 C 1.47028 * 125.64936 * 0.02562 * 16 14 13 18 18 C 1.54317 * 107.27426 * 181.02646 * 17 16 14 19 19 C 1.55160 * 102.94311 * 22.19014 * 18 17 16 20 20 H 1.08999 * 111.00535 * 82.57166 * 19 18 17 21 21 C 1.50700 * 111.00739 * 206.38939 * 19 18 17 22 22 C 1.38670 * 120.42011 * 239.72529 * 21 19 18 23 23 C 1.38632 * 118.42399 * 179.78022 * 22 21 19 24 24 C 1.38230 * 119.15728 * 0.50920 * 23 22 21 25 25 N 1.31852 * 120.76337 * 359.72916 * 24 23 22 26 26 C 1.31885 * 121.72850 * 359.97438 * 25 24 23 27 27 C 1.47430 * 125.64943 * 179.71888 * 16 14 13 28 28 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 30 30 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 31 31 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 32 32 H 0.97005 * 119.99723 * 359.97438 * 13 12 10 33 33 H 1.09006 * 109.87608 * 300.43985 * 17 16 14 34 34 H 1.08995 * 109.88445 * 61.44580 * 17 16 14 35 35 H 1.08995 * 110.72607 * 140.55130 * 18 17 16 36 36 H 1.09008 * 110.72128 * 263.65255 * 18 17 16 37 37 H 1.08004 * 120.78883 * 0.02562 * 22 21 19 38 38 H 1.07996 * 120.41767 * 180.21375 * 23 22 21 39 39 H 1.07997 * 119.61537 * 179.70074 * 24 23 22 40 40 H 1.08001 * 119.62212 * 180.02562 * 26 25 24 41 41 H 1.08997 * 110.36458 * 274.74034 * 27 16 14 42 42 H 1.08999 * 110.36643 * 37.06753 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0490 -3.7518 0.0246 14 6 7.3740 -3.9981 0.0307 15 8 8.1642 -3.0739 0.0313 16 7 7.8233 -5.2687 0.0351 17 6 6.9825 -6.4749 0.0333 18 6 7.9290 -7.6933 0.0663 19 6 9.2366 -7.1016 0.6557 20 1 9.1897 -7.0572 1.7438 21 6 10.4386 -7.8891 0.2016 22 6 11.2658 -8.5049 1.1287 23 6 12.3574 -9.2227 0.6650 24 6 12.5895 -9.2912 -0.6960 25 7 11.7842 -8.6887 -1.5486 26 6 10.7334 -8.0023 -1.1437 27 6 9.2392 -5.6795 0.0360 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3633 0.0059 30 1 5.9281 -1.8591 -0.8704 31 1 5.9199 -1.8544 0.9095 32 1 5.4186 -4.4891 0.0238 33 1 6.3404 -6.4803 0.9142 34 1 6.3728 -6.5005 -0.8698 35 1 7.5315 -8.4730 0.7159 36 1 8.0961 -8.0791 -0.9394 37 1 11.0621 -8.4305 2.1867 38 1 13.0208 -9.7179 1.3585 39 1 13.4405 -9.8443 -1.0651 40 1 10.0962 -7.5225 -1.8719 41 1 9.6266 -5.7077 -0.9825 42 1 9.8309 -4.9999 0.6492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573320459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:07 Heat of formation + Delta-G solvation = -45.768194 kcal Electronic energy + Delta-G solvation = -25301.861809 eV Core-core repulsion = 21473.991177 eV Total energy + Delta-G solvation = -3827.870632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70245 -41.02994 -40.23420 -38.61849 -36.29558 -35.37561 -34.39838 -33.82674 -32.95124 -31.23595 -29.93043 -28.81377 -26.37212 -24.97776 -24.43091 -23.69218 -21.55079 -21.39472 -21.05733 -20.55372 -19.29855 -18.22561 -17.62646 -17.53444 -17.12554 -16.89604 -16.76925 -16.39970 -15.90648 -15.61607 -15.34976 -14.94199 -14.88688 -14.54905 -14.41874 -14.30986 -14.15464 -13.98084 -13.90302 -13.74841 -13.39710 -13.07680 -12.96142 -12.53197 -12.44668 -12.16163 -12.00220 -11.75835 -11.58359 -11.44926 -10.69375 -10.66126 -10.36796 -10.34824 -10.29404 -9.85825 -9.57701 -8.45602 -6.07479 0.16156 0.38367 1.31166 1.34269 1.42017 1.46128 1.77839 2.03716 2.20455 2.68525 2.83788 3.04853 3.10707 3.41145 3.59506 3.67676 3.76737 3.98620 4.03317 4.07293 4.15870 4.20511 4.29872 4.37929 4.42378 4.45035 4.62954 4.66682 4.79763 4.88026 4.90781 4.98387 5.12376 5.21761 5.25851 5.27810 5.40221 5.49068 5.81018 5.87587 5.95392 6.48492 6.77639 6.85655 7.06488 7.27504 7.43659 7.77410 8.70656 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.041199 B = 0.002056 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.457009 B =13614.071102 C =13950.399198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.137 3.863 13 N -0.725 5.725 14 C 0.721 3.279 15 O -0.629 6.629 16 N -0.635 5.635 17 C 0.090 3.910 18 C -0.110 4.110 19 C -0.045 4.045 20 H 0.110 0.890 21 C -0.123 4.123 22 C -0.072 4.072 23 C -0.167 4.167 24 C 0.079 3.921 25 N -0.516 5.516 26 C 0.089 3.911 27 C 0.130 3.870 28 H 0.281 0.719 29 H 0.392 0.608 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.409 0.591 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.154 0.846 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.657 -16.965 3.005 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.500 6.500 12 C 0.009 3.991 13 N -0.382 5.382 14 C 0.423 3.577 15 O -0.511 6.511 16 N -0.373 5.373 17 C -0.032 4.032 18 C -0.147 4.147 19 C -0.064 4.064 20 H 0.128 0.872 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.186 4.186 24 C -0.077 4.077 25 N -0.225 5.225 26 C -0.067 4.067 27 C 0.008 3.992 28 H 0.091 0.909 29 H 0.228 0.772 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.190 0.810 40 H 0.171 0.829 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.735 -16.854 2.101 30.834 hybrid contribution -0.800 0.906 0.677 1.385 sum 24.935 -15.948 2.779 29.729 Atomic orbital electron populations 1.69778 1.07992 1.29444 1.49242 1.26059 0.96435 1.02562 0.95729 0.85452 0.79581 0.77087 0.80062 1.18130 1.19809 1.15621 1.19029 0.80902 0.95288 1.50751 0.91760 1.41916 1.06157 1.07390 1.66244 1.20454 0.89922 0.83902 0.82350 1.90519 1.70740 1.32296 1.56403 1.20714 0.89388 0.84013 1.04992 1.44718 1.05419 1.08879 1.79216 1.15408 0.81975 0.82434 0.77922 1.90882 1.55874 1.43691 1.60616 1.47496 1.08787 1.03370 1.77620 1.22272 0.94398 0.83877 1.02662 1.22723 0.92693 0.96100 1.03221 1.21218 0.92103 0.91546 1.01572 0.87160 1.20552 0.97533 0.99915 0.94580 1.21878 0.92944 0.93776 1.01135 1.22481 0.98832 1.00062 0.97230 1.23240 0.97954 0.95961 0.90554 1.67701 1.05036 1.08786 1.40966 1.22759 0.94044 0.95345 0.94577 1.22290 0.80666 0.95185 1.01079 0.90920 0.77219 0.88036 0.88017 0.75299 0.90738 0.91041 0.87396 0.89576 0.82380 0.81913 0.80986 0.82867 0.91307 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 13.96 21.66 0.30 -53.87 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 3 Si 0.96 38.11 27.74 68.60 1.90 40.01 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.23 -7.92 6.51 99.48 0.65 -7.28 16 7 C -0.33 -18.72 10.16 84.04 0.85 -17.87 16 8 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 9 N -0.58 -26.55 5.09 -306.97 -1.56 -28.11 16 10 C 0.45 19.52 7.85 87.66 0.69 20.21 16 11 O -0.61 -31.51 15.24 -3.07 -0.05 -31.56 16 12 C 0.14 4.63 6.15 85.63 0.53 5.15 16 13 N -0.72 -23.27 5.49 -482.31 -2.65 -25.92 16 14 C 0.72 22.67 8.49 179.06 1.52 24.19 16 15 O -0.63 -23.72 16.60 -4.01 -0.07 -23.79 16 16 N -0.64 -14.80 3.32 -829.30 -2.76 -17.56 16 17 C 0.09 1.53 6.15 86.73 0.53 2.06 16 18 C -0.11 -1.19 6.36 31.78 0.20 -0.99 16 19 C -0.04 -0.53 3.29 -10.07 -0.03 -0.56 16 20 H 0.11 1.08 8.01 -2.39 -0.02 1.06 16 21 C -0.12 -1.51 5.01 -19.77 -0.10 -1.61 16 22 C -0.07 -0.67 9.83 22.47 0.22 -0.45 16 23 C -0.17 -1.46 10.11 22.36 0.23 -1.23 16 24 C 0.08 0.99 11.18 84.69 0.95 1.94 16 25 N -0.52 -9.30 10.36 -195.84 -2.03 -11.33 16 26 C 0.09 1.40 9.50 84.67 0.80 2.21 16 27 C 0.13 2.45 6.31 86.93 0.55 3.00 16 28 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.39 15.18 5.76 -92.71 -0.53 14.64 16 30 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 31 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.41 13.10 6.42 -92.70 -0.60 12.51 16 33 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.89 7.24 -2.38 -0.02 0.87 16 37 H 0.16 0.71 8.04 -2.91 -0.02 0.69 16 38 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.15 2.24 7.01 -2.91 -0.02 2.22 16 41 H 0.07 1.29 6.67 -2.39 -0.02 1.27 16 42 H 0.07 1.48 8.03 -2.39 -0.02 1.46 16 Total: -1.00 -78.40 354.14 0.38 -78.02 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.12 Total: 38.01 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 7.41 Total: 36.09 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -8.69 Total: -136.79 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.11 Total: -55.35 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.01 kcal Total: -78.40 0.38 -78.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573320459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.252 kcal (2) G-P(sol) polarization free energy of solvation -78.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds