Wall clock time and date at job start Fri Apr 10 2020 14:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00685 * 2 1 4 4 H 1.48491 * 109.47292 * 270.00471 * 3 2 1 5 5 H 1.48504 * 109.46575 * 29.99976 * 3 2 1 6 6 H 1.48499 * 109.47071 * 149.99756 * 3 2 1 7 7 C 1.37884 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99921 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99913 * 169.99688 * 10 9 7 12 12 C 1.53243 * 109.33624 * 187.25453 * 11 10 9 13 13 N 1.47083 * 108.51996 * 306.17442 * 12 11 10 14 14 C 1.34774 * 120.87765 * 231.18722 * 13 12 11 15 15 O 1.21361 * 120.00116 * 172.01683 * 14 13 12 16 16 C 1.49360 * 120.00231 * 352.01744 * 14 13 12 17 17 O 1.21377 * 119.99551 * 353.35892 * 16 14 13 18 18 N 1.34776 * 119.99928 * 173.35935 * 16 14 13 19 19 C 1.39754 * 119.99757 * 186.67346 * 18 16 14 20 20 C 1.39343 * 120.49231 * 31.56816 * 19 18 16 21 21 C 1.38488 * 118.35366 * 180.23066 * 20 19 18 22 22 C 1.38284 * 119.24044 * 359.49903 * 21 20 19 23 23 N 1.31859 * 120.93383 * 0.51844 * 22 21 20 24 24 C 1.31814 * 121.79940 * 359.73200 * 23 22 21 25 25 C 1.47077 * 118.23894 * 51.45615 * 13 12 11 26 26 C 1.46898 * 111.00094 * 294.30304 * 10 9 7 27 27 H 0.97006 * 119.99659 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47108 * 59.99667 * 9 7 2 29 29 H 1.09001 * 109.47118 * 299.99946 * 9 7 2 30 30 H 1.08991 * 109.48938 * 67.30052 * 11 10 9 31 31 H 1.08997 * 109.49582 * 307.21421 * 11 10 9 32 32 H 1.09000 * 109.62686 * 186.46514 * 12 11 10 33 33 H 1.09004 * 109.63014 * 65.87715 * 12 11 10 34 34 H 0.96993 * 120.00062 * 6.67522 * 18 16 14 35 35 H 1.07994 * 120.82120 * 359.95715 * 20 19 18 36 36 H 1.07999 * 120.37747 * 179.75576 * 21 20 19 37 37 H 1.08000 * 119.53114 * 180.27111 * 22 21 20 38 38 H 1.08002 * 119.66928 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.62728 * 68.25777 * 25 13 12 40 40 H 1.09004 * 109.62766 * 188.83113 * 25 13 12 41 41 H 1.09000 * 109.48901 * 292.70300 * 26 10 9 42 42 H 1.09000 * 109.48915 * 52.78352 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 7 2.2053 -3.6158 -0.0027 11 6 1.5207 -4.8938 0.2344 12 6 2.5633 -6.0037 0.4062 13 7 3.4611 -5.9857 -0.7587 14 6 3.7113 -7.1112 -1.4565 15 8 4.3352 -7.0546 -2.4960 16 6 3.2209 -8.4282 -0.9507 17 8 2.7036 -8.5030 0.1448 18 7 3.3527 -9.5334 -1.7107 19 6 2.7715 -10.7365 -1.3010 20 6 1.5895 -10.7355 -0.5631 21 6 1.0548 -11.9530 -0.1761 22 6 1.7000 -13.1206 -0.5403 23 7 2.8177 -13.0877 -1.2392 24 6 3.3633 -11.9510 -1.6236 25 6 4.0833 -4.7082 -1.1380 26 6 2.9765 -3.6482 -1.2526 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5562 -0.8920 29 1 0.6238 -2.5575 0.8880 30 1 0.8792 -5.1258 -0.6156 31 1 0.9156 -4.8201 1.1379 32 1 2.0626 -6.9699 0.4677 33 1 3.1391 -5.8278 1.3149 34 1 3.8510 -9.4938 -2.5419 35 1 1.1048 -9.8082 -0.2959 36 1 0.1420 -11.9902 0.4000 37 1 1.2848 -14.0727 -0.2448 38 1 4.2799 -11.9642 -2.1947 39 1 4.8024 -4.4102 -0.3749 40 1 4.5882 -4.8175 -2.0979 41 1 2.3145 -3.8976 -2.0819 42 1 3.4269 -2.6711 -1.4274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602081043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:07 Heat of formation + Delta-G solvation = -18.514751 kcal Electronic energy + Delta-G solvation = -26117.990436 eV Core-core repulsion = 22291.301602 eV Total energy + Delta-G solvation = -3826.688834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51838 -41.19242 -39.91199 -39.07642 -36.83849 -35.79397 -34.39548 -33.17801 -32.23333 -31.27291 -30.22915 -27.70678 -26.31243 -25.01914 -24.58812 -24.02083 -23.28990 -21.95767 -20.87425 -19.27299 -18.65862 -18.41396 -18.14052 -17.67290 -17.51235 -16.89172 -16.67641 -16.38669 -16.09819 -15.67850 -15.62146 -15.33131 -15.18145 -14.96613 -14.84202 -14.37245 -14.18229 -14.08647 -13.67721 -13.21071 -13.05978 -12.81083 -12.78548 -12.59653 -12.43210 -12.34405 -12.23667 -12.04528 -11.77045 -11.36751 -10.79337 -10.71556 -10.62585 -10.29359 -9.99396 -9.47787 -9.10314 -8.21404 -6.31463 -0.30354 0.21356 0.40868 1.00612 1.42521 1.43431 1.55000 1.87507 2.18762 2.40382 2.80532 2.98700 3.10998 3.21526 3.57992 3.78936 3.87556 3.90384 3.97583 4.06894 4.16119 4.20321 4.29455 4.38629 4.51504 4.61800 4.74589 4.78719 4.89920 4.94284 4.98365 5.06212 5.09759 5.16039 5.19257 5.28917 5.61947 5.65103 5.78410 6.00493 6.03611 6.24080 6.43130 6.54244 6.65750 6.84061 6.92797 7.38434 8.89786 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.032775 B = 0.002455 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.113199 B =11402.804383 C =12017.785448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.541 5.541 11 C 0.039 3.961 12 C 0.094 3.906 13 N -0.576 5.576 14 C 0.509 3.491 15 O -0.540 6.540 16 C 0.518 3.482 17 O -0.500 6.500 18 N -0.627 5.627 19 C 0.080 3.920 20 C -0.094 4.094 21 C -0.146 4.146 22 C 0.080 3.920 23 N -0.488 5.488 24 C 0.081 3.919 25 C 0.122 3.878 26 C 0.054 3.946 27 H 0.264 0.736 28 H -0.040 1.040 29 H 0.009 0.991 30 H 0.019 0.981 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.434 0.566 35 H 0.139 0.861 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.180 0.820 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.014 0.986 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -24.326 -2.126 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.090 4.090 12 C -0.027 4.027 13 N -0.309 5.309 14 C 0.291 3.709 15 O -0.418 6.418 16 C 0.301 3.699 17 O -0.376 6.376 18 N -0.274 5.274 19 C -0.016 4.016 20 C -0.122 4.122 21 C -0.166 4.166 22 C -0.077 4.077 23 N -0.196 5.196 24 C -0.078 4.078 25 C 0.001 3.999 26 C -0.075 4.075 27 H 0.073 0.927 28 H -0.023 1.023 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.105 0.895 32 H 0.159 0.841 33 H 0.103 0.897 34 H 0.275 0.725 35 H 0.157 0.843 36 H 0.184 0.816 37 H 0.203 0.797 38 H 0.197 0.803 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.032 0.968 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.036 -24.880 -1.751 25.662 hybrid contribution -0.893 2.110 -0.795 2.425 sum 5.143 -22.770 -2.546 23.482 Atomic orbital electron populations 1.70084 1.07792 1.27917 1.51743 1.25921 0.95718 1.03256 0.94816 0.85374 0.78624 0.78223 0.78356 1.19921 1.21000 1.18681 1.21461 0.93788 0.90815 1.50033 0.91410 1.19377 0.90038 0.88796 0.93555 1.62043 1.27197 1.02983 1.34327 1.22547 0.95837 0.89841 1.00799 1.22870 0.91253 1.01450 0.87144 1.48180 1.44887 1.07856 1.29943 1.19890 0.81500 0.85231 0.84235 1.90754 1.41899 1.86652 1.22525 1.20154 0.79547 0.85472 0.84767 1.90568 1.42315 1.84707 1.20004 1.42971 1.52490 1.06353 1.25598 1.18941 0.94596 0.86369 1.01738 1.21815 0.93221 1.00517 0.96673 1.22393 1.02265 0.91670 1.00259 1.23303 0.90952 0.99916 0.93533 1.67748 1.11794 1.28794 1.11287 1.22938 0.99852 0.85526 0.99495 1.22031 0.94862 0.80174 1.02875 1.22383 0.95377 0.99713 0.89991 0.92711 1.02278 0.97330 0.96309 0.89499 0.84127 0.89746 0.72530 0.84280 0.81646 0.79671 0.80287 0.88931 0.87906 0.96751 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.52 -28.75 8.41 25.60 0.22 -28.54 16 8 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 9 C 0.21 10.85 4.72 85.56 0.40 11.26 16 10 N -0.54 -22.46 4.62 -898.90 -4.15 -26.61 16 11 C 0.04 1.33 5.62 86.38 0.49 1.81 16 12 C 0.09 2.61 6.10 86.35 0.53 3.14 16 13 N -0.58 -16.22 3.00 -818.74 -2.46 -18.68 16 14 C 0.51 13.30 7.74 87.24 0.68 13.98 16 15 O -0.54 -15.47 15.96 -3.28 -0.05 -15.52 16 16 C 0.52 11.53 7.49 87.24 0.65 12.18 16 17 O -0.50 -12.20 10.87 -3.33 -0.04 -12.24 16 18 N -0.63 -10.83 5.34 -304.52 -1.63 -12.46 16 19 C 0.08 1.37 6.32 38.30 0.24 1.61 16 20 C -0.09 -1.65 8.77 22.60 0.20 -1.45 16 21 C -0.15 -1.90 10.10 22.34 0.23 -1.67 16 22 C 0.08 1.05 11.18 84.70 0.95 2.00 16 23 N -0.49 -8.31 10.35 -195.27 -2.02 -10.34 16 24 C 0.08 1.26 11.12 84.85 0.94 2.20 16 25 C 0.12 3.60 6.65 86.50 0.57 4.17 16 26 C 0.05 2.02 5.47 86.53 0.47 2.49 16 27 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 28 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 29 H 0.01 0.48 7.97 -2.39 -0.02 0.46 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 2.91 7.99 -2.39 -0.02 2.89 16 32 H 0.14 3.60 4.44 -38.56 -0.17 3.42 16 33 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.43 5.91 8.30 -92.71 -0.77 5.14 16 35 H 0.14 2.65 6.44 -2.91 -0.02 2.63 16 36 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.10 2.84 7.05 -2.39 -0.02 2.82 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.09 3.44 6.67 -2.39 -0.02 3.42 16 Total: -1.00 -68.35 348.61 -0.88 -69.23 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.13 Total: 12.78 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 7.03 Total: 23.71 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -9.97 Total: -123.38 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.09 Total: -27.76 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.35 -0.88 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.716 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds