Wall clock time and date at job start Fri Apr 10 2020 14:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00345 * 2 1 4 4 H 1.48499 * 109.47062 * 270.00650 * 3 2 1 5 5 H 1.48503 * 109.46890 * 30.00289 * 3 2 1 6 6 H 1.48502 * 109.47425 * 150.00390 * 3 2 1 7 7 C 1.38819 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99664 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99959 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99712 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.52379 * 35.08536 * 10 9 7 12 12 C 1.53046 * 109.49722 * 155.16166 * 10 9 7 13 13 C 1.53036 * 109.53638 * 181.32097 * 12 10 9 14 14 C 1.53628 * 109.23897 * 298.50474 * 13 12 10 15 15 N 1.46926 * 108.54197 * 54.86372 * 14 13 12 16 16 C 1.34772 * 120.63356 * 126.36456 * 15 14 13 17 17 O 1.21531 * 120.00093 * 185.59725 * 16 15 14 18 18 C 1.47983 * 119.99975 * 5.59834 * 16 15 14 19 19 C 1.39838 * 120.59443 * 62.53596 * 18 16 15 20 20 C 1.38461 * 118.35378 * 180.02562 * 19 18 16 21 21 C 1.38590 * 119.45759 * 0.02562 * 20 19 18 22 22 N 1.31645 * 121.17940 * 359.96456 * 21 20 19 23 23 C 1.32466 * 121.79503 * 0.03297 * 22 21 20 24 24 C 1.48309 * 119.79725 * 180.02562 * 23 22 21 25 25 N 1.34776 * 120.00199 * 355.49801 * 24 23 22 26 26 O 1.21495 * 120.00053 * 175.50130 * 24 23 22 27 27 C 1.46933 * 118.73604 * 306.09092 * 15 14 13 28 28 H 0.97003 * 119.99641 * 359.97438 * 1 2 3 29 29 H 0.96994 * 120.00156 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.45616 * 301.33785 * 12 10 9 31 31 H 1.08999 * 109.45927 * 61.30881 * 12 10 9 32 32 H 1.09002 * 109.50181 * 58.58386 * 13 12 10 33 33 H 1.09003 * 109.49289 * 178.65485 * 13 12 10 34 34 H 1.08997 * 109.74603 * 295.12389 * 14 13 12 35 35 H 1.09006 * 109.65923 * 174.55262 * 14 13 12 36 36 H 1.08006 * 120.82372 * 0.02776 * 19 18 16 37 37 H 1.08001 * 120.27794 * 180.27483 * 20 19 18 38 38 H 1.07994 * 119.41480 * 179.97438 * 21 20 19 39 39 H 0.97003 * 120.00068 * 0.02562 * 25 24 23 40 40 H 0.96997 * 120.00329 * 180.02562 * 25 24 23 41 41 H 1.08995 * 109.58270 * 173.64427 * 27 15 14 42 42 H 1.08993 * 109.58526 * 294.07012 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.5659 -3.2069 -0.5912 12 6 5.5011 -2.2589 -0.6077 13 6 6.2548 -3.5904 -0.6383 14 6 6.4287 -4.1069 0.7980 15 7 5.1054 -4.1776 1.4325 16 6 4.6780 -5.3209 2.0039 17 8 3.5443 -5.3980 2.4349 18 6 5.5892 -6.4824 2.1066 19 6 6.7659 -6.3997 2.8576 20 6 7.5848 -7.5143 2.9216 21 6 7.2195 -8.6681 2.2463 22 7 6.1068 -8.7241 1.5451 23 6 5.2882 -7.6869 1.4511 24 6 4.0455 -7.7991 0.6493 25 7 3.7965 -8.9213 -0.0543 26 8 3.2521 -6.8793 0.6266 27 6 4.2593 -2.9763 1.4375 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 5.3992 -1.8758 -1.6231 31 1 6.0558 -1.5415 -0.0029 32 1 5.6884 -4.3158 -1.2224 33 1 7.2348 -3.4432 -1.0923 34 1 7.0672 -3.4251 1.3597 35 1 6.8783 -5.0997 0.7789 36 1 7.0294 -5.4889 3.3749 37 1 8.4988 -7.4862 3.4963 38 1 7.8590 -9.5369 2.2963 39 1 4.4298 -9.6558 -0.0360 40 1 2.9840 -8.9945 -0.5790 41 1 3.2770 -3.2230 1.8404 42 1 4.7245 -2.2043 2.0503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000975526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:15 Heat of formation + Delta-G solvation = -8.148458 kcal Electronic energy + Delta-G solvation = -27250.007003 eV Core-core repulsion = 23423.767685 eV Total energy + Delta-G solvation = -3826.239318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23185 -39.39156 -38.80807 -37.18662 -34.59317 -33.94733 -32.90713 -32.16995 -31.74243 -31.22907 -28.73624 -26.00007 -24.99913 -24.09378 -23.63618 -21.69200 -21.31651 -20.52306 -19.27440 -18.31331 -17.52872 -17.40493 -17.21714 -16.46894 -15.92623 -15.49532 -15.14328 -14.82745 -14.65489 -14.36696 -14.23073 -13.77747 -13.70770 -13.64297 -13.60020 -13.12379 -12.82608 -12.57815 -12.49581 -12.34914 -11.63385 -11.19348 -10.89273 -10.70193 -10.66650 -10.61669 -10.31831 -10.24986 -9.92878 -9.83252 -9.72912 -9.68852 -9.51748 -9.37899 -9.03266 -8.30259 -7.22914 -5.70311 -3.07560 0.19207 0.63405 2.54258 2.86100 3.15266 3.17607 3.40149 3.42318 3.48336 3.53703 3.87839 4.33872 4.36634 4.53474 4.56865 4.63133 4.81057 4.96693 5.01679 5.06196 5.19845 5.39158 5.49725 5.50952 5.52070 5.56518 5.73988 5.86132 5.94508 6.02482 6.08335 6.11538 6.28488 6.43966 6.67381 6.74840 6.81949 6.99526 7.09172 7.36677 7.66068 8.07414 8.16503 8.45305 8.49359 9.25929 9.96974 10.15674 11.47902 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.003691 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.852461 B = 7584.950409 C = 8201.608343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.062 0.938 12 C -0.128 4.128 13 C -0.128 4.128 14 C 0.109 3.891 15 N -0.602 5.602 16 C 0.561 3.439 17 O -0.493 6.493 18 C -0.108 4.108 19 C -0.055 4.055 20 C -0.151 4.151 21 C 0.106 3.894 22 N -0.459 5.459 23 C 0.114 3.886 24 C 0.558 3.442 25 N -0.839 5.839 26 O -0.486 6.486 27 C 0.098 3.902 28 H 0.259 0.741 29 H 0.362 0.638 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.407 0.593 40 H 0.406 0.594 41 H 0.097 0.903 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.613 -18.717 2.894 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.080 0.920 12 C -0.167 4.167 13 C -0.167 4.167 14 C -0.015 4.015 15 N -0.337 5.337 16 C 0.345 3.655 17 O -0.365 6.365 18 C -0.114 4.114 19 C -0.081 4.081 20 C -0.171 4.171 21 C -0.053 4.053 22 N -0.170 5.170 23 C -0.026 4.026 24 C 0.339 3.661 25 N -0.404 5.404 26 O -0.357 6.357 27 C -0.026 4.026 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.184 0.816 39 H 0.237 0.763 40 H 0.238 0.762 41 H 0.115 0.885 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.019 -18.837 2.773 28.360 hybrid contribution 0.971 1.499 0.335 1.817 sum 21.990 -17.337 3.107 28.174 Atomic orbital electron populations 1.69712 1.05108 1.25717 1.57371 1.24680 0.95208 0.97101 1.01990 0.86559 0.79181 0.85126 0.77686 1.21132 1.21766 1.20360 1.19149 0.80401 0.94942 1.42989 0.88944 1.42725 1.04146 1.01684 1.89889 1.20466 0.90862 0.89450 0.93005 0.92011 1.21856 0.96800 0.96245 1.01777 1.21932 1.00641 0.98297 0.95857 1.21801 0.84542 1.01090 0.94054 1.48066 1.17838 1.11501 1.56320 1.17800 0.86458 0.81778 0.79449 1.90847 1.17409 1.81324 1.46968 1.21059 0.95894 0.95984 0.98468 1.21775 0.91257 0.99675 0.95393 1.22328 1.01026 0.93599 1.00103 1.22923 0.92623 0.97828 0.91956 1.67559 1.03921 1.28663 1.16884 1.21224 0.94989 0.89259 0.97109 1.17918 0.84923 0.83378 0.79838 1.43569 1.27140 1.18567 1.51146 1.91093 1.45818 1.37673 1.61083 1.22667 0.95688 0.83689 1.00580 0.93078 0.80560 0.91323 0.92156 0.91437 0.91049 0.91362 0.91022 0.83433 0.83482 0.81563 0.76326 0.76218 0.88509 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.21 13.97 55.49 0.78 -29.44 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.43 27.73 -169.99 -4.71 17.71 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 7 C -0.24 -7.19 10.41 -15.06 -0.16 -7.35 16 8 H 0.09 2.99 8.06 -52.49 -0.42 2.57 16 9 N -0.74 -18.01 4.93 -53.31 -0.26 -18.27 16 10 C 0.17 3.50 2.92 -67.81 -0.20 3.31 16 11 H 0.06 1.42 8.08 -51.93 -0.42 1.00 16 12 C -0.13 -1.97 5.35 -26.69 -0.14 -2.11 16 13 C -0.13 -1.57 6.10 -26.39 -0.16 -1.73 16 14 C 0.11 1.27 5.99 -3.48 -0.02 1.25 16 15 N -0.60 -9.74 2.97 -173.56 -0.51 -10.26 16 16 C 0.56 9.89 5.63 -12.27 -0.07 9.82 16 17 O -0.49 -11.14 14.46 -18.28 -0.26 -11.40 16 18 C -0.11 -1.43 4.30 -104.49 -0.45 -1.88 16 19 C -0.05 -0.49 8.55 -38.90 -0.33 -0.82 16 20 C -0.15 -0.90 10.10 -39.37 -0.40 -1.30 16 21 C 0.11 0.70 11.17 -17.50 -0.20 0.51 16 22 N -0.46 -4.49 9.55 -9.51 -0.09 -4.58 16 23 C 0.11 1.48 6.78 -82.64 -0.56 0.92 16 24 C 0.56 8.30 8.06 -12.12 -0.10 8.20 16 25 N -0.84 -8.49 8.86 30.64 0.27 -8.22 16 26 O -0.49 -9.77 13.89 -18.25 -0.25 -10.02 16 27 C 0.10 1.91 6.02 -3.71 -0.02 1.88 16 28 H 0.26 7.96 8.31 -40.82 -0.34 7.63 16 29 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.72 5.73 -51.93 -0.30 0.42 16 36 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.41 3.06 8.18 -40.82 -0.33 2.73 16 40 H 0.41 3.61 8.93 -40.82 -0.36 3.24 16 41 H 0.10 2.29 7.00 -51.93 -0.36 1.93 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -39.27 346.93 -8.13 -47.40 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.41 Total: 11.08 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -2.90 Total: 10.77 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: 0.18 Total: -70.77 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.52 Total: -21.43 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.27 -8.13 -47.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000975526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.253 kcal (2) G-P(sol) polarization free energy of solvation -39.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds