Wall clock time and date at job start Fri Apr 10 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00345 * 2 1 4 4 H 1.48499 * 109.47062 * 270.00650 * 3 2 1 5 5 H 1.48503 * 109.46890 * 30.00289 * 3 2 1 6 6 H 1.48502 * 109.47425 * 150.00390 * 3 2 1 7 7 C 1.38819 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99664 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99959 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99712 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.52379 * 35.08536 * 10 9 7 12 12 C 1.53046 * 109.49722 * 155.16166 * 10 9 7 13 13 C 1.53036 * 109.53638 * 181.32097 * 12 10 9 14 14 C 1.53628 * 109.23897 * 298.50474 * 13 12 10 15 15 N 1.46926 * 108.54197 * 54.86372 * 14 13 12 16 16 C 1.34772 * 120.63356 * 126.36456 * 15 14 13 17 17 O 1.21531 * 120.00093 * 185.59725 * 16 15 14 18 18 C 1.47983 * 119.99975 * 5.59834 * 16 15 14 19 19 C 1.39838 * 120.59443 * 62.53596 * 18 16 15 20 20 C 1.38461 * 118.35378 * 180.02562 * 19 18 16 21 21 C 1.38590 * 119.45759 * 0.02562 * 20 19 18 22 22 N 1.31645 * 121.17940 * 359.96456 * 21 20 19 23 23 C 1.32466 * 121.79503 * 0.03297 * 22 21 20 24 24 C 1.48309 * 119.79725 * 180.02562 * 23 22 21 25 25 N 1.34776 * 120.00199 * 355.49801 * 24 23 22 26 26 O 1.21495 * 120.00053 * 175.50130 * 24 23 22 27 27 C 1.46933 * 118.73604 * 306.09092 * 15 14 13 28 28 H 0.97003 * 119.99641 * 359.97438 * 1 2 3 29 29 H 0.96994 * 120.00156 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.45616 * 301.33785 * 12 10 9 31 31 H 1.08999 * 109.45927 * 61.30881 * 12 10 9 32 32 H 1.09002 * 109.50181 * 58.58386 * 13 12 10 33 33 H 1.09003 * 109.49289 * 178.65485 * 13 12 10 34 34 H 1.08997 * 109.74603 * 295.12389 * 14 13 12 35 35 H 1.09006 * 109.65923 * 174.55262 * 14 13 12 36 36 H 1.08006 * 120.82372 * 0.02776 * 19 18 16 37 37 H 1.08001 * 120.27794 * 180.27483 * 20 19 18 38 38 H 1.07994 * 119.41480 * 179.97438 * 21 20 19 39 39 H 0.97003 * 120.00068 * 0.02562 * 25 24 23 40 40 H 0.96997 * 120.00329 * 180.02562 * 25 24 23 41 41 H 1.08995 * 109.58270 * 173.64427 * 27 15 14 42 42 H 1.08993 * 109.58526 * 294.07012 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.5659 -3.2069 -0.5912 12 6 5.5011 -2.2589 -0.6077 13 6 6.2548 -3.5904 -0.6383 14 6 6.4287 -4.1069 0.7980 15 7 5.1054 -4.1776 1.4325 16 6 4.6780 -5.3209 2.0039 17 8 3.5443 -5.3980 2.4349 18 6 5.5892 -6.4824 2.1066 19 6 6.7659 -6.3997 2.8576 20 6 7.5848 -7.5143 2.9216 21 6 7.2195 -8.6681 2.2463 22 7 6.1068 -8.7241 1.5451 23 6 5.2882 -7.6869 1.4511 24 6 4.0455 -7.7991 0.6493 25 7 3.7965 -8.9213 -0.0543 26 8 3.2521 -6.8793 0.6266 27 6 4.2593 -2.9763 1.4375 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 5.3992 -1.8758 -1.6231 31 1 6.0558 -1.5415 -0.0029 32 1 5.6884 -4.3158 -1.2224 33 1 7.2348 -3.4432 -1.0923 34 1 7.0672 -3.4251 1.3597 35 1 6.8783 -5.0997 0.7789 36 1 7.0294 -5.4889 3.3749 37 1 8.4988 -7.4862 3.4963 38 1 7.8590 -9.5369 2.2963 39 1 4.4298 -9.6558 -0.0360 40 1 2.9840 -8.9945 -0.5790 41 1 3.2770 -3.2230 1.8404 42 1 4.7245 -2.2043 2.0503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000975526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:14 Heat of formation + Delta-G solvation = -41.490311 kcal Electronic energy + Delta-G solvation = -27251.452814 eV Core-core repulsion = 23423.767685 eV Total energy + Delta-G solvation = -3827.685129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17348 -40.62128 -39.82815 -38.65045 -36.34582 -34.99120 -34.20580 -33.42076 -32.92720 -32.56306 -30.43811 -27.15649 -25.90386 -25.64335 -24.86458 -23.18338 -22.32743 -21.93458 -20.56052 -19.59779 -19.23900 -18.44907 -18.26743 -17.38793 -17.03485 -16.77038 -16.37696 -16.17229 -16.05186 -15.72147 -15.42464 -15.18746 -15.01894 -14.81421 -14.56171 -14.34642 -14.23551 -13.94402 -13.84243 -13.50891 -13.37146 -12.97409 -12.56372 -12.19477 -11.97536 -11.94176 -11.83984 -11.67412 -11.41032 -11.17407 -11.10322 -10.91723 -10.78978 -10.63827 -10.25900 -9.83670 -9.27045 -8.06215 -5.43533 -0.60611 -0.02912 1.34646 1.42087 1.48943 1.57033 1.67226 1.96943 2.25580 2.46024 2.71774 3.12793 3.23557 3.37282 3.49863 3.75380 3.84561 3.91285 3.92926 4.00903 4.04374 4.22449 4.31363 4.38967 4.45132 4.52583 4.66979 4.81876 4.85765 4.89394 4.97315 5.00226 5.06431 5.32923 5.39456 5.46320 5.50852 5.72246 5.75864 6.17189 6.24031 6.39247 6.65021 7.02232 7.14323 7.24850 7.73141 7.99003 9.16255 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.003691 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.852461 B = 7584.950409 C = 8201.608343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.242 4.242 8 H 0.034 0.966 9 N -0.741 5.741 10 C 0.170 3.830 11 H 0.014 0.986 12 C -0.118 4.118 13 C -0.123 4.123 14 C 0.104 3.896 15 N -0.602 5.602 16 C 0.554 3.446 17 O -0.564 6.564 18 C -0.131 4.131 19 C -0.054 4.054 20 C -0.119 4.119 21 C 0.113 3.887 22 N -0.462 5.462 23 C 0.091 3.909 24 C 0.547 3.453 25 N -0.815 5.815 26 O -0.558 6.558 27 C 0.111 3.889 28 H 0.260 0.740 29 H 0.373 0.627 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.168 0.832 37 H 0.199 0.801 38 H 0.214 0.786 39 H 0.422 0.578 40 H 0.411 0.589 41 H 0.035 0.965 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.612 -19.087 3.612 35.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.373 4.373 8 H 0.052 0.948 9 N -0.385 5.385 10 C 0.061 3.939 11 H 0.032 0.968 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.017 4.017 15 N -0.335 5.335 16 C 0.342 3.658 17 O -0.442 6.442 18 C -0.138 4.138 19 C -0.080 4.080 20 C -0.138 4.138 21 C -0.047 4.047 22 N -0.173 5.173 23 C -0.047 4.047 24 C 0.330 3.670 25 N -0.380 5.380 26 O -0.434 6.434 27 C -0.015 4.015 28 H 0.069 0.931 29 H 0.207 0.793 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.185 0.815 37 H 0.216 0.784 38 H 0.231 0.769 39 H 0.255 0.745 40 H 0.243 0.757 41 H 0.054 0.946 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.133 -19.301 3.452 34.292 hybrid contribution -1.158 1.344 0.126 1.779 sum 26.975 -17.956 3.578 32.602 Atomic orbital electron populations 1.69944 1.07656 1.27022 1.59077 1.25708 0.96271 1.01949 1.01771 0.85202 0.78695 0.78073 0.78461 1.19784 1.22092 1.16636 1.18927 0.82897 0.92967 1.42530 0.94807 1.42565 1.02190 1.03620 1.90079 1.20599 0.93276 0.86775 0.93284 0.96756 1.21782 0.93316 0.98930 1.01593 1.21950 1.02099 0.95665 0.96405 1.22210 0.82316 1.03578 0.93588 1.48125 1.19045 1.10073 1.56262 1.18608 0.86295 0.82950 0.77964 1.90795 1.20801 1.82609 1.49965 1.20761 0.97291 0.94114 1.01640 1.22082 0.89713 1.01874 0.94311 1.22880 1.01354 0.91454 0.98089 1.23858 0.91358 0.99687 0.89748 1.67596 1.04774 1.27074 1.17901 1.20851 0.95133 0.90331 0.98428 1.18510 0.85406 0.83242 0.79888 1.43427 1.27368 1.17744 1.49503 1.91073 1.48384 1.40204 1.63765 1.22129 0.94011 0.85739 0.99605 0.93137 0.79262 0.91286 0.89396 0.93787 0.86221 0.87628 0.88612 0.81463 0.78359 0.76913 0.74524 0.75732 0.94609 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -67.74 13.97 21.65 0.30 -67.43 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 46.93 27.73 68.60 1.90 48.83 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.24 -10.23 6.52 99.48 0.65 -9.58 16 7 C -0.24 -15.29 10.41 84.04 0.88 -14.41 16 8 H 0.03 2.47 8.06 -2.91 -0.02 2.44 16 9 N -0.74 -37.20 4.93 -322.56 -1.59 -38.79 16 10 C 0.17 7.29 2.92 45.07 0.13 7.42 16 11 H 0.01 0.73 8.08 -2.39 -0.02 0.71 16 12 C -0.12 -3.41 5.35 30.62 0.16 -3.25 16 13 C -0.12 -2.68 6.10 30.82 0.19 -2.49 16 14 C 0.10 2.13 5.99 86.51 0.52 2.65 16 15 N -0.60 -20.07 2.97 -821.32 -2.44 -22.50 16 16 C 0.55 20.92 5.63 86.83 0.49 21.41 16 17 O -0.56 -28.63 14.46 18.77 0.27 -28.36 16 18 C -0.13 -3.43 4.30 -19.78 -0.09 -3.52 16 19 C -0.05 -0.75 8.55 22.71 0.19 -0.56 16 20 C -0.12 -0.66 10.10 22.41 0.23 -0.44 16 21 C 0.11 0.87 11.17 84.80 0.95 1.81 16 22 N -0.46 -7.78 9.55 -183.99 -1.76 -9.53 16 23 C 0.09 2.34 6.78 42.26 0.29 2.63 16 24 C 0.55 17.57 8.06 86.92 0.70 18.27 16 25 N -0.82 -17.48 8.86 -175.29 -1.55 -19.03 16 26 O -0.56 -25.30 13.89 18.88 0.26 -25.04 16 27 C 0.11 4.61 6.02 86.36 0.52 5.13 16 28 H 0.26 16.74 8.31 -92.71 -0.77 15.97 16 29 H 0.37 16.94 5.66 -92.71 -0.52 16.42 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.56 5.73 -2.38 -0.01 1.55 16 36 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.20 -0.78 8.06 -2.91 -0.02 -0.80 16 38 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 39 H 0.42 6.23 8.18 -92.71 -0.76 5.47 16 40 H 0.41 8.03 8.93 -92.71 -0.83 7.20 16 41 H 0.04 1.91 7.00 -2.39 -0.02 1.89 16 42 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -102.66 346.93 -0.05 -102.72 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -1.08 Total: 28.16 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 5.62 Total: 30.98 kcal Atomic # 7 Polarization: -150.26 SS G_CDS: -7.03 Total: -157.29 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: 0.53 Total: -53.40 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.90 Total: 48.83 kcal Total: -102.66 -0.05 -102.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000975526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.227 kcal (2) G-P(sol) polarization free energy of solvation -102.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds