Wall clock time and date at job start Fri Apr 10 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00552 * 2 1 4 4 H 1.48498 * 109.46905 * 239.99653 * 3 2 1 5 5 H 1.48499 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47254 * 119.99136 * 3 2 1 7 7 C 1.38810 * 119.99435 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99986 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00039 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49775 * 325.00304 * 10 9 7 12 12 C 1.53047 * 109.52302 * 204.91781 * 10 9 7 13 13 C 1.53036 * 109.53687 * 178.66758 * 12 10 9 14 14 C 1.53190 * 109.31237 * 61.36744 * 13 12 10 15 15 N 1.46930 * 108.77798 * 305.36067 * 14 13 12 16 16 C 1.34768 * 120.63514 * 233.59010 * 15 14 13 17 17 O 1.21531 * 120.00262 * 174.86868 * 16 15 14 18 18 C 1.47984 * 120.00255 * 354.86372 * 16 15 14 19 19 C 1.39850 * 120.59286 * 301.84705 * 18 16 15 20 20 C 1.38461 * 118.34859 * 179.97438 * 19 18 16 21 21 C 1.38588 * 119.46130 * 359.97438 * 20 19 18 22 22 N 1.31642 * 121.17722 * 0.02562 * 21 20 19 23 23 C 1.32465 * 121.80081 * 359.69643 * 22 21 20 24 24 C 1.48301 * 119.80291 * 180.28955 * 23 22 21 25 25 N 1.34775 * 119.99789 * 354.34142 * 24 23 22 26 26 O 1.21493 * 120.00037 * 174.34155 * 24 23 22 27 27 C 1.46930 * 118.73293 * 53.60755 * 15 14 13 28 28 H 0.96998 * 119.99256 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99870 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.45892 * 298.69109 * 12 10 9 31 31 H 1.09002 * 109.45426 * 58.65016 * 12 10 9 32 32 H 1.09001 * 109.50131 * 301.41744 * 13 12 10 33 33 H 1.08999 * 109.52325 * 181.33580 * 13 12 10 34 34 H 1.09005 * 109.58818 * 185.57601 * 14 13 12 35 35 H 1.08995 * 109.58887 * 65.15292 * 14 13 12 36 36 H 1.07996 * 120.82280 * 359.97355 * 19 18 16 37 37 H 1.08002 * 120.27116 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.41105 * 179.97438 * 21 20 19 39 39 H 0.96990 * 120.00267 * 0.02562 * 25 24 23 40 40 H 0.97006 * 119.99835 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.58401 * 186.60339 * 27 15 14 42 42 H 1.09001 * 109.70115 * 66.25173 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6961 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9687 -3.5511 -0.5887 12 6 1.1806 -4.7539 -0.6072 13 6 1.9574 -6.0721 -0.6378 14 6 2.3195 -6.4801 0.7936 15 7 3.0389 -5.3706 1.4341 16 6 4.2424 -5.5719 2.0063 17 8 4.8694 -4.6301 2.4500 18 6 4.8004 -6.9397 2.0944 19 6 4.0992 -7.9532 2.7554 20 6 4.6643 -9.2161 2.8094 21 6 5.8955 -9.4380 2.2130 22 7 6.5383 -8.4691 1.5958 23 6 6.0402 -7.2446 1.5104 24 6 6.7995 -6.1880 0.7989 25 7 8.0412 -6.4429 0.3411 26 8 6.3022 -5.0926 0.6287 27 6 2.4211 -4.0376 1.4392 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 0.2816 -4.8760 -0.0033 31 1 0.9005 -4.4737 -1.6227 32 1 2.8692 -5.9437 -1.2211 33 1 1.3410 -6.8476 -1.0924 34 1 2.9566 -7.3643 0.7715 35 1 1.4095 -6.6969 1.3531 36 1 3.1408 -7.7557 3.2122 37 1 4.1495 -10.0219 3.3116 38 1 6.3357 -10.4233 2.2560 39 1 8.4381 -7.3174 0.4766 40 1 8.5378 -5.7518 -0.1247 41 1 3.1252 -3.3101 1.8431 42 1 1.5197 -4.0527 2.0519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000975530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:17 Heat of formation + Delta-G solvation = -12.961521 kcal Electronic energy + Delta-G solvation = -27204.369182 eV Core-core repulsion = 23377.921154 eV Total energy + Delta-G solvation = -3826.448028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22507 -39.34257 -38.80994 -37.09792 -34.47420 -33.93661 -32.90715 -32.12355 -31.71431 -31.05580 -28.22269 -25.95912 -24.97873 -24.03772 -23.75971 -21.82841 -21.31289 -20.44293 -19.15330 -18.29587 -17.45396 -17.18517 -17.00915 -16.48931 -15.84186 -15.45948 -15.18703 -14.85315 -14.57299 -14.28472 -14.07652 -13.82532 -13.65551 -13.58460 -13.44557 -13.29572 -12.79478 -12.59507 -12.31261 -12.20406 -11.31877 -11.02052 -10.76558 -10.65080 -10.63784 -10.51976 -10.25739 -10.15726 -9.94307 -9.76580 -9.73218 -9.69088 -9.58632 -9.36236 -8.98442 -8.23774 -6.92119 -5.71435 -3.00561 0.19752 0.63815 2.55618 2.88650 3.16187 3.20959 3.52480 3.54990 3.57631 3.58744 3.87978 4.36251 4.37896 4.54120 4.57653 4.65607 4.92526 4.99188 5.04633 5.14058 5.29811 5.52621 5.54974 5.55976 5.58148 5.66672 5.85136 5.98195 6.05302 6.10323 6.23580 6.28280 6.41517 6.57100 6.67153 6.83281 6.92942 7.09175 7.11432 7.37011 7.71331 7.81529 8.16236 8.46216 8.49537 9.59045 10.12951 10.48764 11.50984 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003730 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.035639 B = 7505.244430 C = 8350.021850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.053 0.947 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.108 3.892 15 N -0.599 5.599 16 C 0.562 3.438 17 O -0.501 6.501 18 C -0.109 4.109 19 C -0.054 4.054 20 C -0.151 4.151 21 C 0.106 3.894 22 N -0.460 5.460 23 C 0.115 3.885 24 C 0.561 3.439 25 N -0.839 5.839 26 O -0.488 6.488 27 C 0.097 3.903 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.407 0.593 40 H 0.406 0.594 41 H 0.092 0.908 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.573 -25.987 3.335 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.071 0.929 12 C -0.163 4.163 13 C -0.168 4.168 14 C -0.015 4.015 15 N -0.334 5.334 16 C 0.347 3.653 17 O -0.375 6.375 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.171 4.171 21 C -0.053 4.053 22 N -0.171 5.171 23 C -0.025 4.025 24 C 0.342 3.658 25 N -0.404 5.404 26 O -0.359 6.359 27 C -0.027 4.027 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.184 0.816 39 H 0.237 0.763 40 H 0.237 0.763 41 H 0.110 0.890 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.343 -24.729 3.144 26.989 hybrid contribution -0.285 0.681 0.354 0.819 sum 10.058 -24.048 3.498 26.300 Atomic orbital electron populations 1.69658 1.05093 1.25754 1.57830 1.24724 0.95500 0.97676 1.02831 0.86262 0.78531 0.83385 0.78054 1.21222 1.21740 1.21114 1.19275 0.91181 0.83978 1.42605 0.91009 1.42361 1.05728 0.99616 1.88146 1.20493 0.94952 0.86301 0.92555 0.92885 1.21813 0.98583 0.94086 1.01822 1.21869 1.00930 0.98251 0.95759 1.21743 0.96565 0.89052 0.94187 1.48088 1.18363 1.11186 1.55746 1.17781 0.81094 0.87044 0.79385 1.90821 1.57786 1.41755 1.47174 1.21080 0.95370 0.96096 0.98961 1.21811 0.99548 0.91523 0.95182 1.22333 0.97022 0.97722 1.00032 1.22925 0.91862 0.98060 0.92432 1.67556 1.34287 0.99678 1.15591 1.21209 0.92081 0.91856 0.97337 1.17872 0.82214 0.86482 0.79220 1.43550 1.17006 1.18976 1.60898 1.91054 1.68161 1.22220 1.54480 1.22755 0.97488 0.81333 1.01085 0.93518 0.78142 0.92049 0.91423 0.91630 0.91103 0.91069 0.91350 0.83369 0.83457 0.81556 0.76318 0.76271 0.88999 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 23.48 29.55 -169.99 -5.02 18.45 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.97 9.93 -15.06 -0.15 -7.12 16 8 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.72 -18.57 5.13 -53.31 -0.27 -18.85 16 10 C 0.17 3.57 2.92 -67.81 -0.20 3.37 16 11 H 0.05 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.12 -2.06 5.36 -26.69 -0.14 -2.21 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C 0.11 1.33 5.85 -3.71 -0.02 1.31 16 15 N -0.60 -10.01 2.97 -173.83 -0.52 -10.52 16 16 C 0.56 10.05 5.65 -12.27 -0.07 9.98 16 17 O -0.50 -11.30 14.45 -18.21 -0.26 -11.57 16 18 C -0.11 -1.47 4.48 -104.49 -0.47 -1.93 16 19 C -0.05 -0.49 8.15 -38.90 -0.32 -0.81 16 20 C -0.15 -0.93 10.10 -39.37 -0.40 -1.33 16 21 C 0.11 0.72 11.17 -17.50 -0.20 0.52 16 22 N -0.46 -4.56 9.55 -9.51 -0.09 -4.65 16 23 C 0.11 1.51 6.78 -82.64 -0.56 0.95 16 24 C 0.56 8.37 8.01 -12.12 -0.10 8.28 16 25 N -0.84 -8.52 8.86 30.63 0.27 -8.25 16 26 O -0.49 -9.75 13.95 -18.18 -0.25 -10.00 16 27 C 0.10 1.97 6.02 -3.71 -0.02 1.94 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.75 5.53 -51.93 -0.29 0.46 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.15 1.09 8.03 -52.49 -0.42 0.67 16 37 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 39 H 0.41 3.10 8.18 -40.82 -0.33 2.76 16 40 H 0.41 3.57 8.93 -40.82 -0.36 3.21 16 41 H 0.09 2.20 7.00 -51.93 -0.36 1.83 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -37.96 349.49 -8.49 -46.45 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.44 Total: 11.02 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -2.90 Total: 10.66 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: 0.12 Total: -70.29 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.52 Total: -21.57 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.96 -8.49 -46.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000975530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.489 kcal (2) G-P(sol) polarization free energy of solvation -37.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds