Wall clock time and date at job start Fri Apr 10 2020 14:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00552 * 2 1 4 4 H 1.48498 * 109.46905 * 239.99653 * 3 2 1 5 5 H 1.48499 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47254 * 119.99136 * 3 2 1 7 7 C 1.38810 * 119.99435 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99986 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00039 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49775 * 325.00304 * 10 9 7 12 12 C 1.53047 * 109.52302 * 204.91781 * 10 9 7 13 13 C 1.53036 * 109.53687 * 178.66758 * 12 10 9 14 14 C 1.53190 * 109.31237 * 61.36744 * 13 12 10 15 15 N 1.46930 * 108.77798 * 305.36067 * 14 13 12 16 16 C 1.34768 * 120.63514 * 233.59010 * 15 14 13 17 17 O 1.21531 * 120.00262 * 174.86868 * 16 15 14 18 18 C 1.47984 * 120.00255 * 354.86372 * 16 15 14 19 19 C 1.39850 * 120.59286 * 301.84705 * 18 16 15 20 20 C 1.38461 * 118.34859 * 179.97438 * 19 18 16 21 21 C 1.38588 * 119.46130 * 359.97438 * 20 19 18 22 22 N 1.31642 * 121.17722 * 0.02562 * 21 20 19 23 23 C 1.32465 * 121.80081 * 359.69643 * 22 21 20 24 24 C 1.48301 * 119.80291 * 180.28955 * 23 22 21 25 25 N 1.34775 * 119.99789 * 354.34142 * 24 23 22 26 26 O 1.21493 * 120.00037 * 174.34155 * 24 23 22 27 27 C 1.46930 * 118.73293 * 53.60755 * 15 14 13 28 28 H 0.96998 * 119.99256 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99870 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.45892 * 298.69109 * 12 10 9 31 31 H 1.09002 * 109.45426 * 58.65016 * 12 10 9 32 32 H 1.09001 * 109.50131 * 301.41744 * 13 12 10 33 33 H 1.08999 * 109.52325 * 181.33580 * 13 12 10 34 34 H 1.09005 * 109.58818 * 185.57601 * 14 13 12 35 35 H 1.08995 * 109.58887 * 65.15292 * 14 13 12 36 36 H 1.07996 * 120.82280 * 359.97355 * 19 18 16 37 37 H 1.08002 * 120.27116 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.41105 * 179.97438 * 21 20 19 39 39 H 0.96990 * 120.00267 * 0.02562 * 25 24 23 40 40 H 0.97006 * 119.99835 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.58401 * 186.60339 * 27 15 14 42 42 H 1.09001 * 109.70115 * 66.25173 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6961 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9687 -3.5511 -0.5887 12 6 1.1806 -4.7539 -0.6072 13 6 1.9574 -6.0721 -0.6378 14 6 2.3195 -6.4801 0.7936 15 7 3.0389 -5.3706 1.4341 16 6 4.2424 -5.5719 2.0063 17 8 4.8694 -4.6301 2.4500 18 6 4.8004 -6.9397 2.0944 19 6 4.0992 -7.9532 2.7554 20 6 4.6643 -9.2161 2.8094 21 6 5.8955 -9.4380 2.2130 22 7 6.5383 -8.4691 1.5958 23 6 6.0402 -7.2446 1.5104 24 6 6.7995 -6.1880 0.7989 25 7 8.0412 -6.4429 0.3411 26 8 6.3022 -5.0926 0.6287 27 6 2.4211 -4.0376 1.4392 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 0.2816 -4.8760 -0.0033 31 1 0.9005 -4.4737 -1.6227 32 1 2.8692 -5.9437 -1.2211 33 1 1.3410 -6.8476 -1.0924 34 1 2.9566 -7.3643 0.7715 35 1 1.4095 -6.6969 1.3531 36 1 3.1408 -7.7557 3.2122 37 1 4.1495 -10.0219 3.3116 38 1 6.3357 -10.4233 2.2560 39 1 8.4381 -7.3174 0.4766 40 1 8.5378 -5.7518 -0.1247 41 1 3.1252 -3.3101 1.8431 42 1 1.5197 -4.0527 2.0519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000975530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:16 Heat of formation + Delta-G solvation = -43.917511 kcal Electronic energy + Delta-G solvation = -27205.711535 eV Core-core repulsion = 23377.921154 eV Total energy + Delta-G solvation = -3827.790381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17280 -40.59979 -39.81579 -38.58711 -36.25534 -34.98175 -34.18066 -33.32813 -32.78641 -32.52500 -30.00597 -27.15399 -25.96753 -25.76989 -24.86547 -23.31351 -22.30113 -21.81804 -20.46306 -19.26857 -19.13453 -18.45933 -18.25279 -17.40912 -16.96520 -16.82029 -16.31064 -16.15104 -15.95331 -15.59020 -15.46208 -15.40890 -14.96884 -14.85917 -14.54225 -14.33152 -14.05364 -13.82799 -13.74056 -13.50038 -13.13699 -12.92048 -12.54506 -12.27848 -12.10565 -11.94995 -11.74702 -11.64611 -11.39291 -11.17852 -11.09002 -10.90041 -10.76775 -10.62990 -10.26217 -9.74063 -9.03523 -8.01670 -5.30702 -0.60637 -0.03642 1.40325 1.43645 1.50440 1.60051 1.67753 1.98707 2.26828 2.50988 2.73977 3.12611 3.30512 3.39047 3.70041 3.76374 3.84672 3.91795 3.96685 4.02089 4.15365 4.28814 4.34097 4.40367 4.45489 4.54122 4.71081 4.83659 4.85625 4.89366 4.99118 5.01194 5.07527 5.35903 5.40122 5.42394 5.47974 5.57060 5.77083 6.21719 6.24723 6.40883 6.65288 7.14448 7.25034 7.28208 7.98857 8.27283 9.20621 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003730 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.035639 B = 7505.244430 C = 8350.021850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.249 4.249 8 H 0.056 0.944 9 N -0.727 5.727 10 C 0.168 3.832 11 H 0.016 0.984 12 C -0.115 4.115 13 C -0.122 4.122 14 C 0.104 3.896 15 N -0.600 5.600 16 C 0.557 3.443 17 O -0.566 6.566 18 C -0.134 4.134 19 C -0.055 4.055 20 C -0.120 4.120 21 C 0.114 3.886 22 N -0.462 5.462 23 C 0.093 3.907 24 C 0.549 3.451 25 N -0.816 5.816 26 O -0.557 6.557 27 C 0.113 3.887 28 H 0.255 0.745 29 H 0.380 0.620 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.199 0.801 38 H 0.215 0.785 39 H 0.422 0.578 40 H 0.411 0.589 41 H 0.040 0.960 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 -30.947 3.998 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.381 4.381 8 H 0.074 0.926 9 N -0.367 5.367 10 C 0.058 3.942 11 H 0.034 0.966 12 C -0.153 4.153 13 C -0.160 4.160 14 C -0.017 4.017 15 N -0.333 5.333 16 C 0.344 3.656 17 O -0.445 6.445 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.139 4.139 21 C -0.046 4.046 22 N -0.174 5.174 23 C -0.046 4.046 24 C 0.332 3.668 25 N -0.381 5.381 26 O -0.433 6.433 27 C -0.012 4.012 28 H 0.064 0.936 29 H 0.213 0.787 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.185 0.815 37 H 0.216 0.784 38 H 0.231 0.769 39 H 0.254 0.746 40 H 0.243 0.757 41 H 0.058 0.942 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.053 -29.796 3.781 31.673 hybrid contribution -0.081 2.002 0.176 2.011 sum 9.972 -27.794 3.957 29.793 Atomic orbital electron populations 1.69773 1.06109 1.26337 1.58844 1.25434 0.96441 1.00566 1.03122 0.85327 0.77475 0.79722 0.77956 1.20612 1.20836 1.21177 1.19423 0.90746 0.85759 1.42199 0.92625 1.42432 1.05479 1.00397 1.88422 1.20607 0.94184 0.86366 0.93031 0.96612 1.21714 0.98511 0.94033 1.01047 1.21869 1.00298 0.97281 0.96576 1.22119 0.97939 0.88150 0.93486 1.48117 1.18616 1.10667 1.55889 1.18565 0.80488 0.88624 0.77886 1.90766 1.59358 1.44501 1.49853 1.20776 0.96514 0.94426 1.02326 1.22110 1.00122 0.91528 0.94267 1.22881 0.96155 0.97272 0.97595 1.23861 0.91894 0.98758 0.90041 1.67600 1.34573 0.98799 1.16423 1.20874 0.92124 0.92734 0.98840 1.18438 0.83130 0.86341 0.78911 1.43405 1.15670 1.19771 1.59235 1.91026 1.69866 1.24995 1.57420 1.22145 0.96463 0.82864 0.99742 0.93636 0.78723 0.90405 0.92114 0.93540 0.86513 0.88314 0.88045 0.81507 0.78387 0.76897 0.74578 0.75687 0.94162 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.52 13.06 21.65 0.28 -60.24 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.97 49.85 29.55 68.60 2.03 51.88 16 4 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 7 C -0.25 -15.35 9.93 84.03 0.83 -14.51 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 9 N -0.73 -39.67 5.13 -322.56 -1.65 -41.32 16 10 C 0.17 7.57 2.92 45.07 0.13 7.70 16 11 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 12 C -0.11 -3.77 5.36 30.62 0.16 -3.61 16 13 C -0.12 -2.95 6.08 30.67 0.19 -2.76 16 14 C 0.10 2.32 5.85 86.36 0.51 2.82 16 15 N -0.60 -20.60 2.97 -822.17 -2.44 -23.04 16 16 C 0.56 20.97 5.65 86.83 0.49 21.46 16 17 O -0.57 -28.06 14.45 18.70 0.27 -27.79 16 18 C -0.13 -3.51 4.48 -19.78 -0.09 -3.59 16 19 C -0.05 -0.78 8.15 22.71 0.19 -0.59 16 20 C -0.12 -0.70 10.10 22.41 0.23 -0.48 16 21 C 0.11 0.88 11.17 84.80 0.95 1.83 16 22 N -0.46 -7.76 9.55 -184.00 -1.76 -9.51 16 23 C 0.09 2.38 6.78 42.25 0.29 2.66 16 24 C 0.55 17.31 8.01 86.92 0.70 18.00 16 25 N -0.82 -17.03 8.86 -175.30 -1.55 -18.58 16 26 O -0.56 -24.44 13.95 18.82 0.26 -24.18 16 27 C 0.11 4.90 6.02 86.36 0.52 5.42 16 28 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.38 21.18 7.80 -92.71 -0.72 20.45 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 1.72 5.53 -2.38 -0.01 1.71 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.17 1.71 8.03 -2.91 -0.02 1.68 16 37 H 0.20 -0.71 8.06 -2.91 -0.02 -0.73 16 38 H 0.21 -0.31 8.06 -2.91 -0.02 -0.34 16 39 H 0.42 6.09 8.18 -92.72 -0.76 5.33 16 40 H 0.41 7.67 8.93 -92.70 -0.83 6.84 16 41 H 0.04 2.13 7.00 -2.39 -0.02 2.12 16 42 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -94.24 349.49 -0.23 -94.47 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -1.22 Total: 27.32 kcal Atomic # 6 Polarization: 25.44 SS G_CDS: 5.55 Total: 30.99 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -7.12 Total: -152.69 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: 0.53 Total: -51.97 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.88 kcal Total: -94.24 -0.23 -94.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000975530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.554 kcal (2) G-P(sol) polarization free energy of solvation -94.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds