Wall clock time and date at job start Fri Apr 10 2020 14:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47048 * 85.01989 * 3 2 1 5 5 H 1.48503 * 109.46983 * 205.02353 * 3 2 1 6 6 H 1.48508 * 109.46948 * 325.02257 * 3 2 1 7 7 C 1.38811 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99965 * 187.37723 * 7 2 1 9 9 N 1.36941 * 119.99936 * 7.37967 * 7 2 1 10 10 C 1.47026 * 125.64734 * 6.33599 * 9 7 2 11 11 C 1.54337 * 107.26213 * 178.85056 * 10 9 7 12 12 H 1.08997 * 110.51317 * 96.45668 * 11 10 9 13 13 O 1.42905 * 110.84735 * 219.67324 * 11 10 9 14 14 C 1.55152 * 103.02207 * 338.14023 * 11 10 9 15 15 H 1.09001 * 111.03967 * 277.21764 * 14 11 10 16 16 N 1.46502 * 111.00321 * 153.37846 * 14 11 10 17 17 C 1.34776 * 119.99912 * 161.35084 * 16 14 11 18 18 O 1.21276 * 120.00201 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99805 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.47044 * 179.97438 * 19 17 16 21 21 H 1.08997 * 110.01478 * 54.29910 * 20 19 17 22 22 C 1.54262 * 110.02931 * 175.69156 * 20 19 17 23 23 C 1.54897 * 104.19193 * 142.89629 * 22 20 19 24 24 C 1.54879 * 102.74841 * 322.05573 * 23 22 20 25 25 C 1.53877 * 110.03024 * 292.90785 * 20 19 17 26 26 F 1.39894 * 110.03518 * 0.02562 * 25 20 19 27 27 F 1.39908 * 110.02812 * 121.43214 * 25 20 19 28 28 C 1.47424 * 125.64766 * 186.64660 * 9 7 2 29 29 H 0.96999 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.88324 * 298.39526 * 10 9 7 31 31 H 1.08999 * 109.87927 * 59.56259 * 10 9 7 32 32 H 0.96698 * 113.99532 * 293.69526 * 13 11 10 33 33 H 0.97005 * 119.99784 * 341.35607 * 16 14 11 34 34 H 1.08993 * 109.47421 * 300.00025 * 19 17 16 35 35 H 1.09004 * 109.46840 * 59.99937 * 19 17 16 36 36 H 1.08994 * 110.48496 * 261.57017 * 22 20 19 37 37 H 1.09000 * 110.48878 * 24.21982 * 22 20 19 38 38 H 1.08997 * 110.75648 * 80.37442 * 23 22 20 39 39 H 1.08999 * 110.75289 * 203.73802 * 23 22 20 40 40 H 1.09003 * 110.48765 * 156.62729 * 24 23 22 41 41 H 1.09003 * 110.48527 * 279.13028 * 24 23 22 42 42 H 1.09000 * 110.36704 * 322.93199 * 28 9 7 43 43 H 1.09002 * 110.36399 * 85.25315 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 3.5964 1.4120 -0.5922 6 1 1.5041 2.6200 -0.8026 7 6 2.0103 -1.2021 -0.0005 8 1 3.0835 -1.2060 0.1195 9 7 1.3341 -2.3831 -0.1534 10 6 -0.0985 -2.5173 -0.4558 11 6 -0.4044 -4.0262 -0.5640 12 1 -0.7969 -4.4049 0.3797 13 8 -1.3168 -4.2847 -1.6329 14 6 0.9861 -4.6439 -0.8676 15 1 1.2200 -4.5779 -1.9302 16 7 1.0574 -6.0312 -0.4023 17 6 2.0065 -6.8564 -0.8865 18 8 2.8019 -6.4505 -1.7071 19 6 2.0795 -8.2837 -0.4082 20 6 3.2365 -8.9982 -1.1096 21 1 4.1614 -8.4394 -0.9668 22 6 3.3911 -10.4277 -0.5509 23 6 3.7767 -11.2786 -1.7865 24 6 2.9148 -10.6561 -2.9127 25 6 2.9340 -9.1422 -2.6114 26 9 1.6881 -8.5782 -2.9057 27 9 3.9335 -8.5157 -3.3637 28 6 1.9206 -3.7305 -0.0356 29 1 -0.4850 0.8401 0.0004 30 1 -0.6896 -2.0737 0.3454 31 1 -0.3251 -2.0262 -1.4021 32 1 -2.2010 -3.9194 -1.4923 33 1 0.4214 -6.3557 0.2544 34 1 2.2430 -8.2979 0.6693 35 1 1.1441 -8.7930 -0.6405 36 1 4.1828 -10.4613 0.1975 37 1 2.4491 -10.7757 -0.1271 38 1 4.8383 -11.1753 -2.0106 39 1 3.5135 -12.3251 -1.6321 40 1 3.3587 -10.8564 -3.8878 41 1 1.8964 -11.0427 -2.8716 42 1 2.9292 -3.7426 -0.4488 43 1 1.9329 -4.0491 1.0067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077569855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:23 Heat of formation + Delta-G solvation = -166.354441 kcal Electronic energy + Delta-G solvation = -27985.487391 eV Core-core repulsion = 23701.698560 eV Total energy + Delta-G solvation = -4283.788831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.78234 -46.83522 -39.74297 -38.12839 -37.31666 -35.04972 -33.96739 -32.18411 -31.49588 -28.53928 -28.09366 -27.19205 -25.83736 -24.21532 -21.60265 -21.08212 -20.52350 -20.17485 -19.82519 -17.74427 -17.23591 -17.09363 -16.78460 -16.43749 -16.12286 -15.65731 -15.06246 -14.79530 -14.38970 -14.22290 -14.03748 -13.90798 -13.61557 -13.19556 -13.18520 -12.96032 -12.68632 -12.66028 -12.28287 -12.03638 -11.93157 -11.80486 -11.60502 -11.57082 -11.40658 -11.21073 -11.08285 -10.89379 -10.79992 -10.59319 -10.16388 -9.87657 -9.78224 -9.70168 -9.27955 -8.78191 -8.60107 -6.88108 -5.74277 -3.10275 2.89323 3.30926 3.40376 3.46069 3.49066 3.65232 3.77084 4.02907 4.16150 4.45742 4.62779 4.65119 4.73425 4.83342 4.92841 5.04522 5.08006 5.20642 5.24927 5.32114 5.38431 5.44224 5.47307 5.53759 5.59583 5.61159 5.70984 5.77605 5.84843 5.93802 6.12731 6.17434 6.58336 6.66988 6.93961 7.32412 7.48520 7.71421 7.77906 8.12428 8.19655 8.49509 9.16062 9.76972 10.40528 11.36270 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.003000 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.826541 B = 9332.580768 C = 9758.549760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.149 3.851 11 C 0.070 3.930 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.141 3.859 15 H 0.101 0.899 16 N -0.716 5.716 17 C 0.511 3.489 18 O -0.530 6.530 19 C -0.135 4.135 20 C -0.118 4.118 21 H 0.109 0.891 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.293 3.707 26 F -0.195 7.195 27 F -0.191 7.191 28 C 0.131 3.869 29 H 0.253 0.747 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.376 0.624 33 H 0.396 0.604 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -24.688 0.781 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.023 3.977 11 C 0.010 3.990 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.119 0.881 16 N -0.367 5.367 17 C 0.297 3.703 18 O -0.406 6.406 19 C -0.175 4.175 20 C -0.138 4.138 21 H 0.127 0.873 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.257 3.743 26 F -0.176 7.176 27 F -0.171 7.171 28 C 0.003 3.997 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.223 0.777 33 H 0.229 0.771 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.339 -24.418 -0.109 24.530 hybrid contribution -0.530 1.290 0.472 1.472 sum 1.809 -23.128 0.363 23.202 Atomic orbital electron populations 1.69916 1.04984 1.25164 1.56948 1.24816 0.95732 0.97821 1.02062 0.86062 0.78793 0.83258 0.77450 1.21608 1.20509 1.21576 1.19091 0.91030 0.82368 1.43080 0.90212 1.44250 1.05048 0.99932 1.83420 1.21873 0.86462 0.88142 1.01208 1.23436 0.88647 0.98493 0.88450 0.92407 1.86482 1.24897 1.80179 1.45235 1.22199 0.94660 0.79100 1.00500 0.88120 1.45876 1.33616 1.11902 1.45258 1.20429 0.81002 0.87283 0.81602 1.90758 1.40319 1.77065 1.32501 1.21702 1.00101 0.93567 1.02126 1.22609 1.01255 0.98073 0.91825 0.87296 1.22441 1.02804 0.92407 0.97949 1.22464 1.00143 0.99650 0.93738 1.23418 1.03360 0.92020 1.01537 1.21601 0.72548 0.89372 0.90787 1.92999 1.42865 1.87266 1.94462 1.93034 1.61031 1.84706 1.78369 1.21840 0.96112 0.85740 0.95993 0.93706 0.91650 0.93731 0.77738 0.77061 0.87924 0.88183 0.90014 0.90316 0.90415 0.90005 0.89101 0.88556 0.93142 0.96019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.48 55.49 0.58 -26.44 16 2 C -0.01 -0.23 5.45 -17.43 -0.09 -0.33 16 3 Si 0.91 22.42 29.56 -169.99 -5.02 17.39 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.50 10.26 -15.06 -0.15 -6.65 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 N -0.60 -15.71 3.39 -170.06 -0.58 -16.29 16 10 C 0.15 3.60 5.21 -3.06 -0.02 3.58 16 11 C 0.07 1.32 3.94 -24.89 -0.10 1.22 16 12 H 0.06 0.95 8.00 -51.93 -0.42 0.54 16 13 O -0.56 -10.00 13.39 -35.23 -0.47 -10.47 16 14 C 0.14 2.75 3.04 -65.78 -0.20 2.55 16 15 H 0.10 2.30 7.73 -51.93 -0.40 1.90 16 16 N -0.72 -10.89 5.23 -51.73 -0.27 -11.16 16 17 C 0.51 7.90 6.70 -10.98 -0.07 7.83 16 18 O -0.53 -10.59 14.25 5.56 0.08 -10.51 16 19 C -0.13 -1.35 4.63 -27.88 -0.13 -1.48 16 20 C -0.12 -1.19 2.40 -89.50 -0.21 -1.41 16 21 H 0.11 1.27 7.82 -51.93 -0.41 0.86 16 22 C -0.12 -0.73 6.36 -25.07 -0.16 -0.89 16 23 C -0.12 -0.72 6.91 -24.74 -0.17 -0.89 16 24 C -0.17 -1.33 6.41 -25.02 -0.16 -1.49 16 25 C 0.29 3.61 1.79 -25.56 -0.05 3.57 16 26 F -0.20 -2.93 14.05 2.25 0.03 -2.90 16 27 F -0.19 -2.98 16.74 2.25 0.04 -2.94 16 28 C 0.13 2.89 6.93 -2.53 -0.02 2.87 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.07 1.70 6.99 -51.93 -0.36 1.34 16 31 H 0.04 1.20 7.83 -51.93 -0.41 0.80 16 32 H 0.38 5.04 9.12 45.56 0.42 5.46 16 33 H 0.40 4.66 8.51 -40.82 -0.35 4.32 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.85 7.66 -51.93 -0.40 0.46 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 41 H 0.10 0.66 8.12 -51.93 -0.42 0.23 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -35.89 351.19 -7.51 -43.40 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.66 Total: 6.15 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.54 Total: 8.48 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.27 Total: -53.89 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.39 Total: -20.98 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.07 Total: -5.84 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.89 -7.51 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077569855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.952 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds