Wall clock time and date at job start Fri Apr 10 2020 14:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47048 * 85.01989 * 3 2 1 5 5 H 1.48503 * 109.46983 * 205.02353 * 3 2 1 6 6 H 1.48508 * 109.46948 * 325.02257 * 3 2 1 7 7 C 1.38811 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99965 * 187.37723 * 7 2 1 9 9 N 1.36941 * 119.99936 * 7.37967 * 7 2 1 10 10 C 1.47026 * 125.64734 * 6.33599 * 9 7 2 11 11 C 1.54337 * 107.26213 * 178.85056 * 10 9 7 12 12 H 1.08997 * 110.51317 * 96.45668 * 11 10 9 13 13 O 1.42905 * 110.84735 * 219.67324 * 11 10 9 14 14 C 1.55152 * 103.02207 * 338.14023 * 11 10 9 15 15 H 1.09001 * 111.03967 * 277.21764 * 14 11 10 16 16 N 1.46502 * 111.00321 * 153.37846 * 14 11 10 17 17 C 1.34776 * 119.99912 * 161.35084 * 16 14 11 18 18 O 1.21276 * 120.00201 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99805 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.47044 * 179.97438 * 19 17 16 21 21 H 1.08997 * 110.01478 * 54.29910 * 20 19 17 22 22 C 1.54262 * 110.02931 * 175.69156 * 20 19 17 23 23 C 1.54897 * 104.19193 * 142.89629 * 22 20 19 24 24 C 1.54879 * 102.74841 * 322.05573 * 23 22 20 25 25 C 1.53877 * 110.03024 * 292.90785 * 20 19 17 26 26 F 1.39894 * 110.03518 * 0.02562 * 25 20 19 27 27 F 1.39908 * 110.02812 * 121.43214 * 25 20 19 28 28 C 1.47424 * 125.64766 * 186.64660 * 9 7 2 29 29 H 0.96999 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.88324 * 298.39526 * 10 9 7 31 31 H 1.08999 * 109.87927 * 59.56259 * 10 9 7 32 32 H 0.96698 * 113.99532 * 293.69526 * 13 11 10 33 33 H 0.97005 * 119.99784 * 341.35607 * 16 14 11 34 34 H 1.08993 * 109.47421 * 300.00025 * 19 17 16 35 35 H 1.09004 * 109.46840 * 59.99937 * 19 17 16 36 36 H 1.08994 * 110.48496 * 261.57017 * 22 20 19 37 37 H 1.09000 * 110.48878 * 24.21982 * 22 20 19 38 38 H 1.08997 * 110.75648 * 80.37442 * 23 22 20 39 39 H 1.08999 * 110.75289 * 203.73802 * 23 22 20 40 40 H 1.09003 * 110.48765 * 156.62729 * 24 23 22 41 41 H 1.09003 * 110.48527 * 279.13028 * 24 23 22 42 42 H 1.09000 * 110.36704 * 322.93199 * 28 9 7 43 43 H 1.09002 * 110.36399 * 85.25315 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 3.5964 1.4120 -0.5922 6 1 1.5041 2.6200 -0.8026 7 6 2.0103 -1.2021 -0.0005 8 1 3.0835 -1.2060 0.1195 9 7 1.3341 -2.3831 -0.1534 10 6 -0.0985 -2.5173 -0.4558 11 6 -0.4044 -4.0262 -0.5640 12 1 -0.7969 -4.4049 0.3797 13 8 -1.3168 -4.2847 -1.6329 14 6 0.9861 -4.6439 -0.8676 15 1 1.2200 -4.5779 -1.9302 16 7 1.0574 -6.0312 -0.4023 17 6 2.0065 -6.8564 -0.8865 18 8 2.8019 -6.4505 -1.7071 19 6 2.0795 -8.2837 -0.4082 20 6 3.2365 -8.9982 -1.1096 21 1 4.1614 -8.4394 -0.9668 22 6 3.3911 -10.4277 -0.5509 23 6 3.7767 -11.2786 -1.7865 24 6 2.9148 -10.6561 -2.9127 25 6 2.9340 -9.1422 -2.6114 26 9 1.6881 -8.5782 -2.9057 27 9 3.9335 -8.5157 -3.3637 28 6 1.9206 -3.7305 -0.0356 29 1 -0.4850 0.8401 0.0004 30 1 -0.6896 -2.0737 0.3454 31 1 -0.3251 -2.0262 -1.4021 32 1 -2.2010 -3.9194 -1.4923 33 1 0.4214 -6.3557 0.2544 34 1 2.2430 -8.2979 0.6693 35 1 1.1441 -8.7930 -0.6405 36 1 4.1828 -10.4613 0.1975 37 1 2.4491 -10.7757 -0.1271 38 1 4.8383 -11.1753 -2.0106 39 1 3.5135 -12.3251 -1.6321 40 1 3.3587 -10.8564 -3.8878 41 1 1.8964 -11.0427 -2.8716 42 1 2.9292 -3.7426 -0.4488 43 1 1.9329 -4.0491 1.0067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077569855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:22 Heat of formation + Delta-G solvation = -194.415665 kcal Electronic energy + Delta-G solvation = -27986.704217 eV Core-core repulsion = 23701.698560 eV Total energy + Delta-G solvation = -4285.005657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.80311 -47.90245 -41.06698 -39.54740 -38.19430 -36.71502 -35.54184 -33.72770 -32.72350 -30.26485 -29.00503 -28.64793 -27.05257 -25.96211 -22.62518 -22.23589 -22.03542 -21.58359 -20.90181 -19.13492 -18.65767 -18.43506 -17.84040 -17.78204 -17.31677 -17.04458 -16.50072 -16.05351 -15.80312 -15.56602 -15.13861 -15.01332 -14.75628 -14.59906 -14.51172 -14.31598 -14.21636 -13.83139 -13.76507 -13.36153 -13.16508 -13.05155 -12.86545 -12.75699 -12.71243 -12.49963 -12.17467 -12.12726 -12.09666 -11.91785 -11.55566 -11.53085 -11.39996 -11.14150 -10.83832 -10.73478 -10.14176 -8.99260 -7.91335 -5.30681 1.43020 1.45496 1.55011 1.70026 2.08949 2.45636 2.89773 3.06656 3.10413 3.27129 3.30003 3.40453 3.52521 3.74690 3.90043 3.99889 4.02409 4.16509 4.18913 4.32645 4.35708 4.39900 4.48182 4.54248 4.62807 4.68214 4.74605 4.79017 4.87488 5.01443 5.10576 5.13757 5.20527 5.31679 5.38636 5.41566 5.48248 5.60133 6.10904 6.58482 6.84170 7.00878 7.32359 7.65516 8.28609 9.16995 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.003000 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.826541 B = 9332.580768 C = 9758.549760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.078 0.922 9 N -0.621 5.621 10 C 0.156 3.844 11 C 0.094 3.906 12 H 0.098 0.902 13 O -0.570 6.570 14 C 0.155 3.845 15 H 0.060 0.940 16 N -0.703 5.703 17 C 0.502 3.498 18 O -0.583 6.583 19 C -0.125 4.125 20 C -0.120 4.120 21 H 0.084 0.916 22 C -0.107 4.107 23 C -0.117 4.117 24 C -0.158 4.158 25 C 0.266 3.734 26 F -0.216 7.216 27 F -0.221 7.221 28 C 0.133 3.867 29 H 0.250 0.750 30 H 0.045 0.955 31 H 0.004 0.996 32 H 0.396 0.604 33 H 0.418 0.582 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.029 0.971 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 -27.487 2.661 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.030 3.970 11 C 0.033 3.967 12 H 0.116 0.884 13 O -0.377 6.377 14 C 0.048 3.952 15 H 0.078 0.922 16 N -0.356 5.356 17 C 0.291 3.709 18 O -0.462 6.462 19 C -0.164 4.164 20 C -0.140 4.140 21 H 0.102 0.898 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.196 4.196 25 C 0.230 3.770 26 F -0.197 7.197 27 F -0.202 7.202 28 C 0.006 3.994 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.247 0.753 33 H 0.255 0.745 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.047 0.953 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.784 -27.268 1.802 27.385 hybrid contribution -0.357 2.175 -0.177 2.211 sum 1.427 -25.093 1.626 25.186 Atomic orbital electron populations 1.70103 1.06151 1.25637 1.57395 1.25656 0.96725 1.00978 1.01957 0.85046 0.77612 0.78908 0.77644 1.20589 1.19924 1.21677 1.19416 0.91393 0.83854 1.43351 0.90446 1.44520 1.06125 1.00831 1.83425 1.21709 0.85341 0.91758 0.98183 1.23132 0.88745 0.94403 0.90387 0.88394 1.86449 1.26147 1.80003 1.45149 1.21628 0.94401 0.81369 0.97803 0.92163 1.45684 1.34355 1.09890 1.45630 1.21544 0.79647 0.89273 0.80477 1.90748 1.42275 1.78383 1.34844 1.21810 1.01300 0.89167 1.04109 1.22678 1.00093 1.00647 0.90533 0.89763 1.22475 1.04763 0.89095 0.98098 1.22514 0.99438 1.00995 0.92517 1.23454 1.04957 0.88750 1.02467 1.22535 0.71032 0.91372 0.92075 1.92942 1.44126 1.87919 1.94724 1.92964 1.62301 1.85591 1.79320 1.21899 0.95506 0.84753 0.97194 0.94021 0.93723 0.97794 0.75330 0.74480 0.84021 0.85703 0.88451 0.87732 0.90944 0.87081 0.89394 0.86848 0.95306 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 10.48 21.65 0.23 -56.42 16 2 C -0.06 -3.46 5.45 84.86 0.46 -2.99 16 3 Si 0.98 46.79 29.56 68.60 2.03 48.81 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.25 -14.75 10.26 84.03 0.86 -13.89 16 8 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 9 N -0.62 -33.53 3.39 -691.96 -2.35 -35.88 16 10 C 0.16 7.73 5.21 86.73 0.45 8.18 16 11 C 0.09 3.45 3.94 31.79 0.13 3.57 16 12 H 0.10 2.90 8.00 -2.39 -0.02 2.88 16 13 O -0.57 -19.60 13.39 -148.98 -2.00 -21.60 16 14 C 0.16 6.09 3.04 46.38 0.14 6.23 16 15 H 0.06 2.88 7.73 -2.39 -0.02 2.87 16 16 N -0.70 -20.26 5.23 -435.96 -2.28 -22.54 16 17 C 0.50 15.09 6.70 87.66 0.59 15.68 16 18 O -0.58 -24.11 14.25 -3.02 -0.04 -24.15 16 19 C -0.12 -2.12 4.63 29.85 0.14 -1.98 16 20 C -0.12 -2.21 2.40 -10.07 -0.02 -2.24 16 21 H 0.08 1.96 7.82 -2.39 -0.02 1.95 16 22 C -0.11 -0.88 6.36 31.67 0.20 -0.68 16 23 C -0.12 -0.99 6.91 31.88 0.22 -0.77 16 24 C -0.16 -2.25 6.41 31.70 0.20 -2.04 16 25 C 0.27 6.45 1.79 31.35 0.06 6.51 16 26 F -0.22 -6.47 14.05 44.97 0.63 -5.83 16 27 F -0.22 -7.29 16.74 44.97 0.75 -6.54 16 28 C 0.13 5.99 6.93 86.86 0.60 6.59 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.04 2.38 6.99 -2.39 -0.02 2.37 16 31 H 0.00 0.22 7.83 -2.39 -0.02 0.20 16 32 H 0.40 9.99 9.12 -74.06 -0.68 9.32 16 33 H 0.42 8.37 8.51 -92.70 -0.79 7.58 16 34 H 0.14 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.59 7.66 -2.39 -0.02 1.57 16 36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 0.38 7.85 -2.39 -0.02 0.36 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 41 H 0.11 1.21 8.12 -2.39 -0.02 1.19 16 42 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -84.18 351.19 0.58 -83.60 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.42 Total: 18.38 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 4.03 Total: 22.17 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -4.40 Total: -114.85 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -2.04 Total: -45.75 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 1.38 Total: -12.37 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -84.18 0.58 -83.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077569855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.816 kcal (2) G-P(sol) polarization free energy of solvation -84.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds