Wall clock time and date at job start Fri Apr 10 2020 14:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48492 * 109.47084 * 239.99498 * 3 2 1 5 5 H 1.48498 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47190 * 119.99284 * 3 2 1 7 7 C 1.38814 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99594 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64899 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.40412 * 178.89496 * 10 9 7 12 12 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 13 13 O 1.42893 * 110.72271 * 219.52456 * 11 10 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 15 15 H 1.09000 * 110.89538 * 277.26533 * 14 11 10 16 16 N 1.46505 * 111.03913 * 153.47072 * 14 11 10 17 17 C 1.34778 * 120.00074 * 161.22761 * 16 14 11 18 18 O 1.21279 * 119.99855 * 0.02562 * 17 16 14 19 19 C 1.50695 * 119.99695 * 179.97438 * 17 16 14 20 20 C 1.53002 * 109.46879 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.01956 * 305.70277 * 20 19 17 22 22 C 1.54265 * 110.03450 * 184.31347 * 20 19 17 23 23 C 1.54891 * 104.19770 * 217.10566 * 22 20 19 24 24 C 1.54888 * 102.74777 * 37.94042 * 23 22 20 25 25 C 1.53877 * 110.03405 * 67.09428 * 20 19 17 26 26 F 1.39904 * 110.03258 * 238.57108 * 25 20 19 27 27 F 1.39902 * 110.03041 * 0.02562 * 25 20 19 28 28 C 1.47426 * 125.64583 * 180.02562 * 9 7 2 29 29 H 0.97004 * 119.99606 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.88241 * 298.39024 * 10 9 7 31 31 H 1.09000 * 109.88049 * 59.40154 * 10 9 7 32 32 H 0.96708 * 113.99585 * 298.54470 * 13 11 10 33 33 H 0.96998 * 119.99743 * 341.23259 * 16 14 11 34 34 H 1.08994 * 109.47684 * 300.00048 * 19 17 16 35 35 H 1.09002 * 109.47129 * 60.00651 * 19 17 16 36 36 H 1.09007 * 110.48507 * 335.78450 * 22 20 19 37 37 H 1.09005 * 110.48805 * 98.29103 * 22 20 19 38 38 H 1.08999 * 110.75310 * 156.25524 * 23 22 20 39 39 H 1.09000 * 110.75126 * 279.44068 * 23 22 20 40 40 H 1.09005 * 110.48524 * 80.73416 * 24 23 22 41 41 H 1.08998 * 110.49100 * 203.24698 * 24 23 22 42 42 H 1.08999 * 110.36956 * 322.94042 * 28 9 7 43 43 H 1.09003 * 110.36599 * 85.25946 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4522 -4.0433 -0.0279 12 1 -0.6373 -4.4177 0.9789 13 8 -1.5661 -4.3119 -0.8816 14 6 0.8517 -4.6563 -0.6104 15 1 0.8567 -4.5967 -1.6988 16 7 1.0288 -6.0396 -0.1615 17 6 1.8612 -6.8632 -0.8288 18 8 2.4640 -6.4591 -1.8005 19 6 2.0439 -8.2859 -0.3666 20 6 3.0340 -8.9989 -1.2898 21 1 2.7068 -8.9123 -2.3260 22 6 3.1487 -10.4856 -0.8944 23 6 4.6453 -10.8216 -1.1102 24 6 5.3572 -9.5296 -0.6382 25 6 4.4379 -8.3902 -1.1278 26 9 4.8929 -7.9009 -2.3570 27 9 4.4072 -7.3595 -0.1823 28 6 1.9333 -3.7312 0.0016 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5545 -2.0842 0.9023 31 1 -0.5578 -2.0500 -0.8818 32 1 -2.3876 -3.8849 -0.6023 33 1 0.5470 -6.3626 0.6159 34 1 2.4303 -8.2901 0.6525 35 1 1.0845 -8.8027 -0.3937 36 1 2.8734 -10.6246 0.1511 37 1 2.5206 -11.1012 -1.5384 38 1 4.9423 -11.6725 -0.4971 39 1 4.8495 -11.0160 -2.1631 40 1 5.4385 -9.5142 0.4487 41 1 6.3436 -9.4489 -1.0948 42 1 2.8331 -3.7409 -0.6135 43 1 2.1658 -4.0415 1.0203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077569856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:27 Heat of formation + Delta-G solvation = -165.626859 kcal Electronic energy + Delta-G solvation = -28086.587397 eV Core-core repulsion = 23802.830117 eV Total energy + Delta-G solvation = -4283.757280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.75054 -46.80688 -39.73198 -38.11366 -37.30605 -35.03697 -33.96106 -32.17326 -31.47684 -28.52028 -28.07825 -27.17125 -25.81936 -24.20661 -21.59272 -21.07084 -20.51953 -20.15266 -19.82681 -17.72816 -17.21457 -17.03847 -16.77652 -16.41090 -16.09127 -15.68278 -15.01673 -14.74386 -14.43521 -14.14350 -14.11086 -13.90677 -13.59198 -13.19258 -13.14906 -12.94861 -12.68366 -12.65138 -12.25122 -12.05860 -11.91315 -11.79467 -11.59558 -11.52837 -11.35991 -11.20324 -11.07460 -10.86220 -10.76616 -10.57489 -10.16348 -9.86304 -9.79193 -9.68763 -9.28187 -8.76489 -8.58656 -6.87816 -5.73248 -3.07220 2.89690 3.31633 3.42945 3.46405 3.48307 3.67184 3.78459 4.04628 4.17369 4.47006 4.63771 4.64676 4.74512 4.84534 4.94122 5.05039 5.09431 5.17892 5.28960 5.33584 5.39695 5.46970 5.47409 5.54475 5.61741 5.62206 5.71460 5.79117 5.86138 5.94313 6.14209 6.17762 6.60398 6.71490 6.95857 7.34308 7.48693 7.72881 7.78922 8.12515 8.20837 8.50046 9.18675 9.78650 10.42080 11.38704 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.003295 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.034809 B = 8495.625355 C = 9494.994303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.564 6.564 14 C 0.141 3.859 15 H 0.100 0.900 16 N -0.716 5.716 17 C 0.511 3.489 18 O -0.530 6.530 19 C -0.135 4.135 20 C -0.118 4.118 21 H 0.108 0.892 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.293 3.707 26 F -0.190 7.190 27 F -0.194 7.194 28 C 0.131 3.869 29 H 0.253 0.747 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.377 0.623 33 H 0.396 0.604 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -24.155 2.240 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.369 6.369 14 C 0.036 3.964 15 H 0.118 0.882 16 N -0.367 5.367 17 C 0.297 3.703 18 O -0.406 6.406 19 C -0.175 4.175 20 C -0.137 4.137 21 H 0.126 0.874 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.257 3.743 26 F -0.171 7.171 27 F -0.175 7.175 28 C 0.004 3.996 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.229 0.771 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.622 -23.914 1.192 24.217 hybrid contribution -0.220 1.383 0.755 1.591 sum 3.401 -22.531 1.947 22.870 Atomic orbital electron populations 1.69912 1.04927 1.25263 1.57245 1.24807 0.95787 0.97754 1.02071 0.86134 0.78427 0.82844 0.78004 1.21035 1.21572 1.21112 1.19066 0.90567 0.82117 1.43796 0.90193 1.44240 1.01153 0.99970 1.87426 1.21829 0.85540 0.87778 1.02124 1.23486 0.85505 0.98645 0.91528 0.92486 1.86450 1.20463 1.75329 1.54686 1.22258 0.94278 0.79232 1.00654 0.88163 1.45879 1.46215 1.12273 1.32301 1.20429 0.79074 0.87372 0.83462 1.90761 1.46118 1.76930 1.26821 1.21699 1.01106 0.93532 1.01152 1.22605 0.92613 0.95410 1.03109 0.87380 1.22439 0.97004 0.93590 1.02566 1.22456 0.94602 0.96606 1.02315 1.23420 0.99586 0.93870 1.03463 1.21591 0.95217 0.83371 0.74123 1.93033 1.90234 1.89562 1.44302 1.93008 1.97172 1.62592 1.64720 1.21842 0.94980 0.85528 0.97256 0.93650 0.93356 0.92150 0.77616 0.77069 0.88110 0.88016 0.90327 0.90074 0.90033 0.90439 0.88532 0.89063 0.93087 0.95933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.24 10.31 55.49 0.57 -26.67 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.55 10.28 -15.06 -0.15 -6.71 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 9 N -0.60 -15.89 3.39 -170.06 -0.58 -16.46 16 10 C 0.15 3.70 5.14 -3.07 -0.02 3.69 16 11 C 0.07 1.29 3.97 -24.76 -0.10 1.19 16 12 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 13 O -0.56 -9.88 13.40 -35.23 -0.47 -10.35 16 14 C 0.14 2.77 3.05 -65.63 -0.20 2.57 16 15 H 0.10 2.27 7.73 -51.93 -0.40 1.87 16 16 N -0.72 -10.93 5.23 -51.59 -0.27 -11.20 16 17 C 0.51 7.92 6.70 -10.99 -0.07 7.85 16 18 O -0.53 -10.62 14.25 5.56 0.08 -10.54 16 19 C -0.13 -1.36 4.63 -27.88 -0.13 -1.49 16 20 C -0.12 -1.20 2.40 -89.50 -0.21 -1.41 16 21 H 0.11 1.25 7.82 -51.93 -0.41 0.85 16 22 C -0.12 -0.73 6.36 -25.07 -0.16 -0.89 16 23 C -0.12 -0.73 6.91 -24.74 -0.17 -0.90 16 24 C -0.17 -1.37 6.40 -25.02 -0.16 -1.53 16 25 C 0.29 3.67 1.79 -25.55 -0.05 3.63 16 26 F -0.19 -3.02 16.74 2.25 0.04 -2.98 16 27 F -0.19 -2.97 14.04 2.25 0.03 -2.94 16 28 C 0.13 2.97 6.93 -2.52 -0.02 2.95 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 31 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 32 H 0.38 5.06 9.11 45.56 0.42 5.47 16 33 H 0.40 4.68 8.52 -40.82 -0.35 4.33 16 34 H 0.10 0.87 7.66 -51.93 -0.40 0.47 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.69 8.12 -51.93 -0.42 0.26 16 41 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -35.90 351.01 -7.52 -43.42 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.65 Total: 6.29 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.54 Total: 8.62 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.28 Total: -54.33 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.39 Total: -20.89 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.90 -7.52 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077569856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.206 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds