Wall clock time and date at job start Fri Apr 10 2020 14:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85282 * 334.65779 * 10 9 7 12 12 C 1.53786 * 113.61516 * 105.86251 * 10 9 7 13 13 C 1.53959 * 87.01787 * 139.94963 * 12 10 9 14 14 H 1.08998 * 113.61386 * 89.20190 * 13 12 10 15 15 C 1.53005 * 113.66140 * 220.06303 * 13 12 10 16 16 N 1.46495 * 109.47349 * 272.55901 * 15 13 12 17 17 C 1.34776 * 120.00003 * 180.02562 * 16 15 13 18 18 O 1.21518 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.48170 * 120.00197 * 180.02562 * 17 16 15 20 20 C 1.39247 * 119.65712 * 179.72392 * 19 17 16 21 21 C 1.39751 * 118.89886 * 179.77104 * 20 19 17 22 22 C 1.48151 * 120.88664 * 180.23899 * 21 20 19 23 23 N 1.34778 * 119.99666 * 180.25650 * 22 21 20 24 24 O 1.21514 * 119.99951 * 0.25800 * 22 21 20 25 25 C 1.39805 * 118.22650 * 0.49165 * 21 20 19 26 26 C 1.38502 * 119.18847 * 359.74882 * 25 21 20 27 27 N 1.31470 * 121.03035 * 359.97438 * 26 25 21 28 28 C 1.53781 * 87.11210 * 334.63596 * 13 12 10 29 29 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 30 30 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 31 31 H 1.09003 * 113.61150 * 254.52518 * 12 10 9 32 32 H 1.08999 * 113.61345 * 25.42731 * 12 10 9 33 33 H 1.09007 * 109.47052 * 32.56570 * 15 13 12 34 34 H 1.09001 * 109.46758 * 152.55732 * 15 13 12 35 35 H 0.96995 * 120.00038 * 0.02562 * 16 15 13 36 36 H 1.07994 * 120.54874 * 0.02562 * 20 19 17 37 37 H 0.96999 * 120.00570 * 359.97438 * 23 22 21 38 38 H 0.97006 * 119.99680 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.40972 * 179.77255 * 25 21 20 40 40 H 1.07998 * 119.48678 * 180.02562 * 26 25 21 41 41 H 1.09007 * 113.61113 * 270.81450 * 28 13 12 42 42 H 1.08993 * 113.61070 * 139.91430 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 3.0562 -3.5692 -0.4307 12 6 2.0316 -4.3834 1.3535 13 6 1.8602 -5.6905 0.5582 14 1 2.8041 -6.1610 0.2829 15 6 0.8710 -6.6702 1.1928 16 7 1.5739 -7.5156 2.1609 17 6 0.8989 -8.4594 2.8466 18 8 -0.2929 -8.6087 2.6621 19 6 1.6097 -9.3141 3.8262 20 6 0.9041 -10.2831 4.5349 21 6 1.5913 -11.0837 5.4513 22 6 0.8853 -12.1315 6.2251 23 7 1.5646 -12.8900 7.1080 24 8 -0.3063 -12.3069 6.0636 25 6 2.9616 -10.8660 5.6224 26 6 3.5862 -9.8770 4.8807 27 7 2.9108 -9.1450 4.0225 28 6 1.2472 -4.8362 -0.5639 29 1 -0.4851 -0.8401 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.9731 -4.3236 1.8994 32 1 1.1679 -4.1298 1.9681 33 1 0.0835 -6.1134 1.7009 34 1 0.4306 -7.2958 0.4164 35 1 2.5251 -7.3962 2.3084 36 1 -0.1557 -10.4164 4.3759 37 1 2.5158 -12.7502 7.2367 38 1 1.1024 -13.5762 7.6144 39 1 3.5264 -11.4619 6.3240 40 1 4.6447 -9.7050 5.0087 41 1 0.1686 -4.7067 -0.4744 42 1 1.5564 -5.1415 -1.5635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086287672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:47 Heat of formation + Delta-G solvation = -37.341872 kcal Electronic energy + Delta-G solvation = -24819.768238 eV Core-core repulsion = 20992.262999 eV Total energy + Delta-G solvation = -3827.505240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.01690 -40.84606 -40.10361 -39.52602 -36.36750 -35.38422 -35.14421 -33.51332 -32.67396 -31.89812 -28.84368 -26.55633 -26.39933 -25.80643 -24.96076 -23.10342 -22.55277 -21.51910 -20.56281 -19.72471 -19.27863 -18.45100 -18.20684 -17.34750 -16.89348 -16.80429 -16.69410 -16.39893 -16.26216 -16.04027 -15.71733 -15.58368 -15.23064 -15.03192 -14.90908 -14.74294 -14.27959 -13.46123 -13.33795 -13.14878 -13.13103 -12.63769 -12.57619 -12.08490 -11.83934 -11.74829 -11.69399 -11.48332 -11.38305 -11.22208 -11.02806 -10.84496 -10.81948 -10.72360 -10.49054 -10.13880 -9.08796 -8.39386 -5.32789 -0.70194 -0.33818 1.37310 1.58268 1.70225 1.81608 1.84841 1.87394 2.27969 2.72253 2.72611 2.97751 3.38616 3.50813 3.59423 3.63674 3.67145 3.72459 3.77180 3.82738 4.09755 4.16886 4.24193 4.32010 4.46462 4.55317 4.60388 4.67324 4.79016 4.88297 4.88573 4.95792 5.12936 5.23631 5.32390 5.36153 5.59093 5.65241 5.73679 6.25633 6.28045 6.48812 6.62616 7.01379 7.09931 7.13250 8.00508 8.13315 9.12522 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.001934 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.488069 B =14477.735508 C =14716.922511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.111 4.111 3 Si 1.134 2.866 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.331 4.331 8 H 0.071 0.929 9 N -0.743 5.743 10 C 0.148 3.852 11 H 0.079 0.921 12 C -0.153 4.153 13 C -0.094 4.094 14 H 0.123 0.877 15 C 0.135 3.865 16 N -0.691 5.691 17 C 0.561 3.439 18 O -0.575 6.575 19 C 0.061 3.939 20 C -0.076 4.076 21 C -0.108 4.108 22 C 0.562 3.438 23 N -0.816 5.816 24 O -0.582 6.582 25 C -0.085 4.085 26 C 0.103 3.897 27 N -0.451 5.451 28 C -0.135 4.135 29 H 0.243 0.757 30 H 0.358 0.642 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.421 0.579 36 H 0.130 0.870 37 H 0.422 0.578 38 H 0.418 0.582 39 H 0.202 0.798 40 H 0.218 0.782 41 H 0.068 0.932 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.980 -29.947 14.724 36.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.301 4.301 3 Si 0.958 3.042 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.462 4.462 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.038 3.962 11 H 0.097 0.903 12 C -0.194 4.194 13 C -0.113 4.113 14 H 0.141 0.859 15 C 0.011 3.989 16 N -0.342 5.342 17 C 0.346 3.654 18 O -0.454 6.454 19 C -0.075 4.075 20 C -0.099 4.099 21 C -0.119 4.119 22 C 0.347 3.653 23 N -0.381 5.381 24 O -0.462 6.462 25 C -0.106 4.106 26 C -0.057 4.057 27 N -0.163 5.163 28 C -0.174 4.174 29 H 0.053 0.947 30 H 0.190 0.810 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.259 0.741 36 H 0.148 0.852 37 H 0.256 0.744 38 H 0.251 0.749 39 H 0.219 0.781 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.911 -27.695 13.842 33.943 hybrid contribution -0.814 -2.175 0.671 2.418 sum 13.096 -29.870 14.513 35.698 Atomic orbital electron populations 1.70934 1.07304 1.27865 1.56635 1.27260 0.97139 1.04925 1.00815 0.82542 0.73862 0.71362 0.76384 1.19277 1.22034 1.21864 1.20537 0.92507 0.87112 1.46050 0.91144 1.42661 1.04548 1.02099 1.88906 1.21897 0.95532 0.83486 0.95235 0.90270 1.23752 1.01030 0.96070 0.98552 1.22490 0.99464 0.92903 0.96409 0.85909 1.21358 0.94719 0.91842 0.90950 1.45743 1.13971 1.34081 1.40401 1.18249 0.85959 0.80493 0.80691 1.90796 1.16150 1.70974 1.67501 1.20724 0.91148 0.97106 0.98512 1.22099 1.01805 0.92761 0.93185 1.20344 0.95759 0.97548 0.98264 1.18217 0.85928 0.81307 0.79854 1.43464 1.14732 1.38101 1.41846 1.90865 1.17129 1.70513 1.67683 1.23131 0.92003 0.97191 0.98237 1.23715 1.02332 0.90028 0.89638 1.67451 1.06314 1.25460 1.17119 1.23317 0.99781 0.95684 0.98662 0.94655 0.80980 0.91383 0.92766 0.93114 0.90960 0.74066 0.85167 0.74427 0.74871 0.78122 0.76563 0.91365 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.84 13.70 21.65 0.30 -62.54 16 2 C -0.11 -6.55 5.50 84.86 0.47 -6.08 16 3 Si 1.13 52.74 29.92 68.60 2.05 54.79 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.33 -18.77 9.97 84.03 0.84 -17.93 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -38.00 5.41 -320.44 -1.73 -39.74 16 10 C 0.15 5.72 4.47 45.52 0.20 5.93 16 11 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 12 C -0.15 -5.06 7.45 31.18 0.23 -4.83 16 13 C -0.09 -2.38 3.75 -10.21 -0.04 -2.42 16 14 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.13 3.60 5.51 86.38 0.48 4.07 16 16 N -0.69 -16.85 5.54 -465.65 -2.58 -19.43 16 17 C 0.56 15.96 7.81 86.88 0.68 16.64 16 18 O -0.57 -20.93 16.32 -3.77 -0.06 -20.99 16 19 C 0.06 1.38 6.75 41.90 0.28 1.66 16 20 C -0.08 -1.70 9.20 22.88 0.21 -1.49 16 21 C -0.11 -1.48 5.91 -19.90 -0.12 -1.60 16 22 C 0.56 8.31 8.07 86.88 0.70 9.01 16 23 N -0.82 -2.38 8.83 -175.39 -1.55 -3.92 16 24 O -0.58 -15.29 17.28 -3.76 -0.06 -15.35 16 25 C -0.09 -0.33 9.62 22.71 0.22 -0.11 16 26 C 0.10 0.66 11.17 84.81 0.95 1.61 16 27 N -0.45 -7.17 9.51 -185.07 -1.76 -8.93 16 28 C -0.14 -4.19 7.39 31.12 0.23 -3.96 16 29 H 0.24 15.62 6.78 -92.70 -0.63 14.99 16 30 H 0.36 19.41 6.74 -92.71 -0.62 18.79 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.05 7.90 -2.39 -0.02 2.03 16 33 H 0.05 1.60 7.85 -2.38 -0.02 1.58 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.42 8.37 7.80 -92.71 -0.72 7.64 16 36 H 0.13 3.65 7.33 -2.91 -0.02 3.63 16 37 H 0.42 -2.39 6.97 -92.71 -0.65 -3.03 16 38 H 0.42 0.56 8.93 -92.70 -0.83 -0.27 16 39 H 0.20 -1.56 6.53 -2.91 -0.02 -1.58 16 40 H 0.22 -0.55 8.06 -2.91 -0.02 -0.58 16 41 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -89.00 361.84 -1.64 -90.64 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -1.57 Total: 24.96 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.33 Total: 0.50 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -7.33 Total: -134.56 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.13 Total: -36.34 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -89.00 -1.64 -90.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086287672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.302 kcal (2) G-P(sol) polarization free energy of solvation -89.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds