Wall clock time and date at job start Fri Apr 10 2020 14:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47465 * 270.00138 * 3 2 1 5 5 H 1.48498 * 109.46963 * 30.00085 * 3 2 1 6 6 H 1.48500 * 109.47138 * 150.00173 * 3 2 1 7 7 C 1.38814 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99490 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.46508 * 119.99710 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.84947 * 336.19925 * 10 9 7 12 12 C 1.53776 * 113.61221 * 107.50478 * 10 9 7 13 13 C 1.53775 * 87.08393 * 89.11491 * 12 10 9 14 14 H 1.08996 * 113.69476 * 270.87629 * 13 12 10 15 15 C 1.53000 * 113.61825 * 139.97637 * 13 12 10 16 16 N 1.46499 * 109.46840 * 87.50296 * 15 13 12 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 13 18 18 O 1.21517 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.48162 * 119.99983 * 180.02562 * 17 16 15 20 20 C 1.39248 * 119.65808 * 179.72690 * 19 17 16 21 21 C 1.39760 * 118.90245 * 179.77273 * 20 19 17 22 22 C 1.48147 * 120.88437 * 180.23874 * 21 20 19 23 23 N 1.34783 * 119.99565 * 180.25836 * 22 21 20 24 24 O 1.21505 * 120.00597 * 0.26126 * 22 21 20 25 25 C 1.39806 * 118.22325 * 0.49517 * 21 20 19 26 26 C 1.38502 * 119.18812 * 359.74257 * 25 21 20 27 27 N 1.31468 * 121.03628 * 0.02562 * 26 25 21 28 28 C 1.53774 * 113.61242 * 204.99945 * 10 9 7 29 29 H 0.96996 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99975 * 0.02562 * 9 7 2 31 31 H 1.09005 * 113.62055 * 334.56345 * 12 10 9 32 32 H 1.08999 * 113.61331 * 203.66725 * 12 10 9 33 33 H 1.09002 * 109.47398 * 207.50622 * 15 13 12 34 34 H 1.09001 * 109.47194 * 327.50803 * 15 13 12 35 35 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 36 36 H 1.07995 * 120.54720 * 0.02562 * 20 19 17 37 37 H 0.97004 * 120.00316 * 359.97438 * 23 22 21 38 38 H 0.97001 * 120.00262 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.40147 * 179.77459 * 25 21 20 40 40 H 1.07996 * 119.48255 * 179.97438 * 26 25 21 41 41 H 1.09006 * 113.61277 * 156.33445 * 28 10 9 42 42 H 1.09001 * 113.69334 * 25.44856 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2020 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.5280 -3.2972 0.4028 12 6 4.7866 -2.7915 -1.3464 13 6 6.0124 -2.0230 -0.8252 14 1 5.9883 -0.9564 -1.0488 15 6 7.3466 -2.6766 -1.1907 16 7 7.7813 -2.1974 -2.5050 17 6 8.9381 -2.6412 -3.0353 18 8 9.6203 -3.4392 -2.4235 19 6 9.3780 -2.1561 -4.3644 20 6 10.5773 -2.6150 -4.9030 21 6 10.9748 -2.1507 -6.1599 22 6 12.2396 -2.6139 -6.7766 23 7 12.6082 -2.1505 -7.9874 24 8 12.9447 -3.4116 -6.1911 25 6 10.1495 -1.2334 -6.8172 26 6 8.9748 -0.8243 -6.2081 27 7 8.6281 -1.2846 -5.0264 28 6 5.5262 -2.3662 0.5928 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3620 -0.0007 31 1 4.3046 -2.3167 -2.2011 32 1 4.9707 -3.8548 -1.4999 33 1 8.0957 -2.4161 -0.4429 34 1 7.2245 -3.7593 -1.2209 35 1 7.2365 -1.5607 -2.9937 36 1 11.1882 -3.3212 -4.3603 37 1 12.0451 -1.5140 -8.4552 38 1 13.4362 -2.4539 -8.3915 39 1 10.4244 -0.8488 -7.7882 40 1 8.3340 -0.1156 -6.7113 41 1 5.9126 -3.3133 0.9696 42 1 5.6427 -1.5486 1.3042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086567546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:50 Heat of formation + Delta-G solvation = -0.352128 kcal Electronic energy + Delta-G solvation = -25040.333327 eV Core-core repulsion = 21214.432083 eV Total energy + Delta-G solvation = -3825.901244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31963 -39.93278 -39.16106 -38.47014 -34.89045 -34.62798 -33.34197 -32.84690 -31.95906 -30.65241 -27.85710 -25.73993 -25.17632 -24.56199 -23.34835 -22.31633 -21.67893 -20.59128 -19.21202 -18.49435 -17.87224 -17.65899 -17.42321 -16.42286 -16.29453 -15.79325 -15.54495 -15.35846 -15.23902 -14.89327 -14.50011 -14.42746 -14.14606 -14.01122 -13.55202 -13.37164 -12.80573 -12.55967 -12.50522 -12.03772 -11.57540 -11.37024 -11.00996 -10.93221 -10.63946 -10.56955 -10.52186 -10.37932 -10.28880 -10.09754 -9.92147 -9.80626 -9.66709 -9.53494 -9.09198 -8.92144 -7.31253 -5.80674 -3.16763 -0.08707 0.31984 2.08147 2.63109 2.63422 2.95500 3.34295 3.36885 3.42487 3.42945 3.69593 3.95744 4.15047 4.28841 4.40841 4.55134 4.73028 4.91217 4.93873 5.05978 5.09526 5.19942 5.36823 5.38136 5.43695 5.50781 5.74100 5.82936 5.88920 5.91609 6.09906 6.12653 6.23469 6.28600 6.48390 6.59285 6.63337 6.73267 6.89395 7.08337 7.43903 7.54343 7.97358 8.00071 8.39020 9.16920 9.89169 10.08498 11.37439 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.002303 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.653387 B =12156.681318 C =13062.971408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.071 0.929 12 C -0.166 4.166 13 C -0.124 4.124 14 H 0.091 0.909 15 C 0.128 3.872 16 N -0.701 5.701 17 C 0.566 3.434 18 O -0.532 6.532 19 C 0.083 3.917 20 C -0.056 4.056 21 C -0.100 4.100 22 C 0.565 3.435 23 N -0.846 5.846 24 O -0.524 6.524 25 C -0.122 4.122 26 C 0.100 3.900 27 N -0.438 5.438 28 C -0.148 4.148 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.162 0.838 37 H 0.402 0.598 38 H 0.410 0.590 39 H 0.145 0.855 40 H 0.173 0.827 41 H 0.082 0.918 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.266 -1.405 -17.443 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.207 4.207 13 C -0.142 4.142 14 H 0.109 0.891 15 C 0.006 3.994 16 N -0.351 5.351 17 C 0.350 3.650 18 O -0.408 6.408 19 C -0.055 4.055 20 C -0.078 4.078 21 C -0.111 4.111 22 C 0.350 3.650 23 N -0.411 5.411 24 O -0.399 6.399 25 C -0.143 4.143 26 C -0.059 4.059 27 N -0.150 5.150 28 C -0.188 4.188 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.180 0.820 37 H 0.232 0.768 38 H 0.241 0.759 39 H 0.163 0.837 40 H 0.190 0.810 41 H 0.100 0.900 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.014 -2.288 -16.017 28.956 hybrid contribution 1.140 1.638 -1.290 2.377 sum 25.154 -0.650 -17.307 30.540 Atomic orbital electron populations 1.69692 1.05100 1.25881 1.57269 1.24683 0.95256 0.97225 1.01933 0.86561 0.79243 0.85012 0.77789 1.21032 1.21687 1.20310 1.19115 0.80421 0.94834 1.43208 0.89026 1.42514 1.03943 1.01624 1.88911 1.21004 0.90098 0.89902 0.92924 0.91050 1.23859 0.96429 0.98848 1.01567 1.22759 0.92540 1.00168 0.98763 0.89108 1.21585 0.95965 0.99105 0.82793 1.45913 1.22166 1.46260 1.20811 1.17764 0.81772 0.81461 0.84012 1.90817 1.54788 1.34026 1.61205 1.21260 0.92575 0.95802 0.95889 1.22267 0.95177 0.96915 0.93413 1.20279 0.95931 0.99018 0.95887 1.18080 0.84906 0.80692 0.81349 1.43688 1.28072 1.49090 1.20255 1.90877 1.53652 1.33228 1.62128 1.22561 0.95122 0.95853 1.00747 1.22866 0.94521 0.97865 0.90652 1.67495 1.31786 1.07608 1.08156 1.23466 0.98767 1.01615 0.94940 0.92998 0.80512 0.91223 0.90903 0.91398 0.90999 0.75086 0.82003 0.76808 0.75855 0.83705 0.80988 0.89951 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.68 27.73 -169.99 -4.71 16.96 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.73 -16.73 5.11 -52.64 -0.27 -17.00 16 10 C 0.17 3.17 4.56 -67.12 -0.31 2.87 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.17 -2.60 7.43 -25.92 -0.19 -2.80 16 13 C -0.12 -1.71 3.63 -89.81 -0.33 -2.04 16 14 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 16 N -0.70 -8.72 5.54 -61.15 -0.34 -9.06 16 17 C 0.57 7.62 7.81 -12.18 -0.10 7.53 16 18 O -0.53 -8.63 16.32 5.35 0.09 -8.54 16 19 C 0.08 0.94 6.75 -83.05 -0.56 0.38 16 20 C -0.06 -0.59 9.20 -38.64 -0.36 -0.95 16 21 C -0.10 -0.78 5.91 -104.67 -0.62 -1.40 16 22 C 0.57 4.51 8.07 -12.19 -0.10 4.41 16 23 N -0.85 -2.68 8.83 30.60 0.27 -2.41 16 24 O -0.52 -6.51 17.28 5.36 0.09 -6.42 16 25 C -0.12 -0.57 9.62 -38.90 -0.37 -0.95 16 26 C 0.10 0.62 11.17 -17.61 -0.20 0.43 16 27 N -0.44 -4.26 9.51 -9.85 -0.09 -4.35 16 28 C -0.15 -2.19 7.39 -25.92 -0.19 -2.38 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.36 8.14 5.76 -40.82 -0.24 7.90 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 35 H 0.41 4.78 7.80 -40.82 -0.32 4.47 16 36 H 0.16 1.91 7.33 -52.49 -0.38 1.53 16 37 H 0.40 -0.01 6.97 -40.82 -0.28 -0.30 16 38 H 0.41 0.86 8.93 -40.82 -0.36 0.50 16 39 H 0.15 0.05 6.53 -52.49 -0.34 -0.29 16 40 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -36.45 360.27 -7.65 -44.10 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.29 Total: 9.63 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.59 Total: -0.20 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.34 Total: -60.96 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.18 Total: -14.96 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.45 -7.65 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086567546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.748 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds