Wall clock time and date at job start Fri Apr 10 2020 14:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47465 * 270.00138 * 3 2 1 5 5 H 1.48498 * 109.46963 * 30.00085 * 3 2 1 6 6 H 1.48500 * 109.47138 * 150.00173 * 3 2 1 7 7 C 1.38814 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99490 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.46508 * 119.99710 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.84947 * 336.19925 * 10 9 7 12 12 C 1.53776 * 113.61221 * 107.50478 * 10 9 7 13 13 C 1.53775 * 87.08393 * 89.11491 * 12 10 9 14 14 H 1.08996 * 113.69476 * 270.87629 * 13 12 10 15 15 C 1.53000 * 113.61825 * 139.97637 * 13 12 10 16 16 N 1.46499 * 109.46840 * 87.50296 * 15 13 12 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 13 18 18 O 1.21517 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.48162 * 119.99983 * 180.02562 * 17 16 15 20 20 C 1.39248 * 119.65808 * 179.72690 * 19 17 16 21 21 C 1.39760 * 118.90245 * 179.77273 * 20 19 17 22 22 C 1.48147 * 120.88437 * 180.23874 * 21 20 19 23 23 N 1.34783 * 119.99565 * 180.25836 * 22 21 20 24 24 O 1.21505 * 120.00597 * 0.26126 * 22 21 20 25 25 C 1.39806 * 118.22325 * 0.49517 * 21 20 19 26 26 C 1.38502 * 119.18812 * 359.74257 * 25 21 20 27 27 N 1.31468 * 121.03628 * 0.02562 * 26 25 21 28 28 C 1.53774 * 113.61242 * 204.99945 * 10 9 7 29 29 H 0.96996 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99975 * 0.02562 * 9 7 2 31 31 H 1.09005 * 113.62055 * 334.56345 * 12 10 9 32 32 H 1.08999 * 113.61331 * 203.66725 * 12 10 9 33 33 H 1.09002 * 109.47398 * 207.50622 * 15 13 12 34 34 H 1.09001 * 109.47194 * 327.50803 * 15 13 12 35 35 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 36 36 H 1.07995 * 120.54720 * 0.02562 * 20 19 17 37 37 H 0.97004 * 120.00316 * 359.97438 * 23 22 21 38 38 H 0.97001 * 120.00262 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.40147 * 179.77459 * 25 21 20 40 40 H 1.07996 * 119.48255 * 179.97438 * 26 25 21 41 41 H 1.09006 * 113.61277 * 156.33445 * 28 10 9 42 42 H 1.09001 * 113.69334 * 25.44856 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2020 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.5280 -3.2972 0.4028 12 6 4.7866 -2.7915 -1.3464 13 6 6.0124 -2.0230 -0.8252 14 1 5.9883 -0.9564 -1.0488 15 6 7.3466 -2.6766 -1.1907 16 7 7.7813 -2.1974 -2.5050 17 6 8.9381 -2.6412 -3.0353 18 8 9.6203 -3.4392 -2.4235 19 6 9.3780 -2.1561 -4.3644 20 6 10.5773 -2.6150 -4.9030 21 6 10.9748 -2.1507 -6.1599 22 6 12.2396 -2.6139 -6.7766 23 7 12.6082 -2.1505 -7.9874 24 8 12.9447 -3.4116 -6.1911 25 6 10.1495 -1.2334 -6.8172 26 6 8.9748 -0.8243 -6.2081 27 7 8.6281 -1.2846 -5.0264 28 6 5.5262 -2.3662 0.5928 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3620 -0.0007 31 1 4.3046 -2.3167 -2.2011 32 1 4.9707 -3.8548 -1.4999 33 1 8.0957 -2.4161 -0.4429 34 1 7.2245 -3.7593 -1.2209 35 1 7.2365 -1.5607 -2.9937 36 1 11.1882 -3.3212 -4.3603 37 1 12.0451 -1.5140 -8.4552 38 1 13.4362 -2.4539 -8.3915 39 1 10.4244 -0.8488 -7.7882 40 1 8.3340 -0.1156 -6.7113 41 1 5.9126 -3.3133 0.9696 42 1 5.6427 -1.5486 1.3042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086567546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:49 Heat of formation + Delta-G solvation = -31.170168 kcal Electronic energy + Delta-G solvation = -25041.669698 eV Core-core repulsion = 21214.432083 eV Total energy + Delta-G solvation = -3827.237614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.00078 -40.83512 -40.13953 -39.52732 -36.16527 -35.24931 -34.98884 -33.51171 -32.79131 -32.42334 -29.05966 -26.46518 -26.40256 -25.67699 -24.82933 -23.25798 -22.78209 -21.43091 -20.27169 -19.63957 -19.47756 -18.43806 -18.19464 -17.27278 -16.88525 -16.73770 -16.65306 -16.31917 -16.13226 -15.99236 -15.90664 -15.24872 -15.15666 -15.00473 -14.78912 -14.63257 -14.46352 -14.03522 -13.35124 -13.13657 -13.10165 -13.00344 -12.66514 -12.23789 -11.89679 -11.74991 -11.67325 -11.58779 -11.35032 -11.21543 -10.98211 -10.87681 -10.81342 -10.68644 -10.47087 -10.09027 -9.28470 -8.01336 -5.34955 -0.69001 -0.32930 1.38783 1.39061 1.42686 1.49965 1.87801 1.90903 2.29511 2.49488 2.73698 3.00270 3.28983 3.50988 3.52243 3.64548 3.73240 3.74047 3.78323 3.84496 4.00381 4.18657 4.27986 4.37553 4.55557 4.60799 4.69284 4.72864 4.80414 4.93860 4.97327 5.08768 5.22245 5.32042 5.35523 5.45253 5.54753 5.74247 5.81965 6.23933 6.25973 6.30152 6.63648 7.02965 7.09095 7.13383 7.85949 8.04784 9.20139 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.002303 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.653387 B =12156.681318 C =13062.971408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.733 5.733 10 C 0.146 3.854 11 H 0.058 0.942 12 C -0.155 4.155 13 C -0.106 4.106 14 H 0.090 0.910 15 C 0.135 3.865 16 N -0.696 5.696 17 C 0.563 3.437 18 O -0.571 6.571 19 C 0.060 3.940 20 C -0.074 4.074 21 C -0.108 4.108 22 C 0.564 3.436 23 N -0.817 5.817 24 O -0.580 6.580 25 C -0.086 4.086 26 C 0.101 3.899 27 N -0.455 5.455 28 C -0.132 4.132 29 H 0.258 0.742 30 H 0.367 0.633 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.418 0.582 36 H 0.134 0.866 37 H 0.422 0.578 38 H 0.418 0.582 39 H 0.200 0.800 40 H 0.213 0.787 41 H 0.107 0.893 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.435 0.582 -19.983 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.176 1.176 7 C -0.363 4.363 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.036 3.964 11 H 0.077 0.923 12 C -0.195 4.195 13 C -0.124 4.124 14 H 0.109 0.891 15 C 0.012 3.988 16 N -0.346 5.346 17 C 0.348 3.652 18 O -0.450 6.450 19 C -0.076 4.076 20 C -0.096 4.096 21 C -0.119 4.119 22 C 0.348 3.652 23 N -0.382 5.382 24 O -0.460 6.460 25 C -0.107 4.107 26 C -0.059 4.059 27 N -0.167 5.167 28 C -0.171 4.171 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.255 0.745 36 H 0.152 0.848 37 H 0.255 0.745 38 H 0.251 0.749 39 H 0.217 0.783 40 H 0.229 0.771 41 H 0.126 0.874 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 26.226 -0.303 -18.601 32.154 hybrid contribution 0.448 0.956 -0.648 1.239 sum 26.674 0.653 -19.249 32.901 Atomic orbital electron populations 1.69883 1.07192 1.26693 1.59699 1.25530 0.96148 1.01362 1.02712 0.85392 0.78607 0.79466 0.78216 1.20134 1.22461 1.17580 1.19066 0.82596 0.93456 1.41168 0.92580 1.42433 1.02251 1.03498 1.89312 1.21338 0.91588 0.87858 0.95582 0.92346 1.23713 0.96555 1.00168 0.99071 1.22582 0.92242 0.99895 0.97710 0.89144 1.21463 0.95248 0.98926 0.83181 1.45857 1.22003 1.46117 1.20646 1.18153 0.81417 0.80806 0.84792 1.90782 1.55877 1.35808 1.62539 1.20818 0.93447 0.97824 0.95519 1.22113 0.95140 0.97422 0.94940 1.20350 0.96536 0.99868 0.95150 1.18185 0.84562 0.80210 0.82230 1.43477 1.28310 1.48044 1.18398 1.90857 1.55278 1.35987 1.63888 1.23101 0.93024 0.92709 1.01831 1.23649 0.95318 0.97527 0.89439 1.67467 1.31935 1.07556 1.09761 1.23359 0.95368 1.03026 0.95356 0.93353 0.79961 0.92846 0.89115 0.91062 0.91043 0.74494 0.84764 0.74495 0.74864 0.78269 0.77098 0.87436 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.85 13.97 21.65 0.30 -62.55 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.96 44.66 27.73 68.60 1.90 46.56 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 7 C -0.23 -13.08 10.45 84.03 0.88 -12.20 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 9 N -0.73 -33.20 5.11 -320.45 -1.64 -34.84 16 10 C 0.15 5.27 4.56 45.51 0.21 5.47 16 11 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 12 C -0.15 -4.66 7.43 31.12 0.23 -4.43 16 13 C -0.11 -2.71 3.63 -10.27 -0.04 -2.75 16 14 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.13 3.23 5.51 86.38 0.48 3.71 16 16 N -0.70 -16.77 5.54 -465.66 -2.58 -19.35 16 17 C 0.56 15.40 7.81 86.88 0.68 16.08 16 18 O -0.57 -19.31 16.32 -3.77 -0.06 -19.37 16 19 C 0.06 1.36 6.75 41.90 0.28 1.64 16 20 C -0.07 -1.61 9.20 22.88 0.21 -1.40 16 21 C -0.11 -1.49 5.91 -19.90 -0.12 -1.61 16 22 C 0.56 8.21 8.07 86.87 0.70 8.92 16 23 N -0.82 -2.50 8.83 -175.40 -1.55 -4.05 16 24 O -0.58 -14.83 17.28 -3.73 -0.06 -14.89 16 25 C -0.09 -0.42 9.62 22.71 0.22 -0.20 16 26 C 0.10 0.83 11.17 84.81 0.95 1.78 16 27 N -0.45 -7.92 9.51 -185.08 -1.76 -9.68 16 28 C -0.13 -3.61 7.39 31.12 0.23 -3.38 16 29 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.37 15.81 5.76 -92.71 -0.53 15.27 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 32 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.75 7.84 -2.39 -0.02 1.73 16 35 H 0.42 9.16 7.80 -92.71 -0.72 8.44 16 36 H 0.13 3.58 7.33 -2.91 -0.02 3.56 16 37 H 0.42 -2.16 6.97 -92.71 -0.65 -2.80 16 38 H 0.42 0.57 8.93 -92.71 -0.83 -0.26 16 39 H 0.20 -1.30 6.53 -2.91 -0.02 -1.32 16 40 H 0.21 0.05 8.06 -2.91 -0.02 0.03 16 41 H 0.11 2.44 8.10 -2.38 -0.02 2.42 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -85.50 360.27 -1.76 -87.26 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.68 Total: 22.69 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.37 Total: 8.22 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -7.23 Total: -130.47 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.13 Total: -34.26 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.56 kcal Total: -85.50 -1.76 -87.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086567546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.091 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds