Wall clock time and date at job start Fri Apr 10 2020 14:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99357 * 2 1 4 4 H 1.48505 * 109.46622 * 239.99328 * 3 2 1 5 5 H 1.48493 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47077 * 120.00069 * 3 2 1 7 7 C 1.38803 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00070 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.83627 * 0.02562 * 9 7 2 11 11 H 1.08991 * 116.45728 * 0.02562 * 10 9 7 12 12 C 1.55838 * 101.05018 * 233.98700 * 10 9 7 13 13 C 1.54852 * 103.44845 * 327.06689 * 12 10 9 14 14 C 1.50239 * 130.83966 * 180.02562 * 9 7 2 15 15 H 1.08996 * 116.45772 * 359.97438 * 14 9 7 16 16 C 1.55848 * 101.05019 * 233.94808 * 14 9 7 17 17 H 1.08997 * 110.75973 * 208.51096 * 16 14 9 18 18 N 1.46497 * 110.62425 * 85.55306 * 16 14 9 19 19 C 1.34780 * 119.99566 * 159.52368 * 18 16 14 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 O 1.42895 * 109.47503 * 180.02562 * 22 21 19 24 24 C 1.42902 * 114.00370 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47068 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.47606 * 300.00104 * 25 24 23 27 27 F 1.39900 * 109.46920 * 60.00160 * 25 24 23 28 28 C 1.54854 * 103.44541 * 327.06134 * 16 14 9 29 29 H 0.96994 * 120.00569 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.62482 * 85.55132 * 12 10 9 31 31 H 1.08998 * 110.62888 * 208.57443 * 12 10 9 32 32 H 1.08997 * 110.63011 * 118.49033 * 13 12 10 33 33 H 1.09007 * 110.62549 * 241.34776 * 13 12 10 34 34 H 0.96995 * 120.00423 * 339.51674 * 18 16 14 35 35 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 36 36 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 37 37 H 1.09002 * 109.47153 * 299.99998 * 22 21 19 38 38 H 1.08998 * 109.47533 * 59.99628 * 22 21 19 39 39 H 1.08999 * 109.46857 * 300.00103 * 24 23 22 40 40 H 1.09001 * 109.46918 * 59.99989 * 24 23 22 41 41 H 1.09000 * 109.46849 * 179.97438 * 25 24 23 42 42 H 1.08994 * 110.62574 * 118.48993 * 28 16 14 43 43 H 1.08994 * 110.62539 * 241.51295 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1498 -2.6706 -0.0005 11 1 -0.8103 -1.8036 -0.0018 12 6 -0.2750 -3.6095 1.2370 13 6 1.0661 -4.3836 1.2389 14 6 1.8190 -3.8071 0.0016 15 1 2.9001 -3.9455 0.0020 16 6 1.0677 -4.3854 -1.2354 17 1 0.8936 -5.4548 -1.1165 18 7 1.8179 -4.1197 -2.4654 19 6 1.5877 -4.8596 -3.5681 20 8 0.7598 -5.7456 -3.5421 21 6 2.3598 -4.5868 -4.8332 22 6 1.9104 -5.5600 -5.9249 23 8 2.6429 -5.3017 -7.1244 24 6 2.2980 -6.1612 -8.2127 25 6 3.1389 -5.7958 -9.4375 26 9 2.8886 -4.4667 -9.7955 27 9 4.4960 -5.9494 -9.1340 28 6 -0.2734 -3.6112 -1.2364 29 1 -0.4851 0.8399 -0.0004 30 1 -0.3831 -3.0266 2.1518 31 1 -1.1138 -4.2949 1.1158 32 1 1.6231 -4.1848 2.1545 33 1 0.8922 -5.4533 1.1213 34 1 2.4802 -3.4114 -2.4861 35 1 2.1735 -3.5635 -5.1591 36 1 3.4251 -4.7197 -4.6446 37 1 2.0971 -6.5832 -5.5989 38 1 0.8451 -5.4275 -6.1137 39 1 2.4926 -7.1967 -7.9336 40 1 1.2407 -6.0413 -8.4493 41 1 2.8761 -6.4517 -10.2674 42 1 -0.3804 -3.0297 -2.1520 43 1 -1.1123 -4.2964 -1.1153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110570673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:19 Heat of formation + Delta-G solvation = -146.881817 kcal Electronic energy + Delta-G solvation = -26959.629819 eV Core-core repulsion = 22676.685384 eV Total energy + Delta-G solvation = -4282.944434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.15835 -47.19633 -39.88997 -38.69652 -37.90952 -33.80435 -32.58485 -32.16771 -29.83141 -29.13612 -28.77932 -27.65712 -24.35309 -23.81009 -23.20871 -21.27802 -19.90446 -19.67085 -18.65261 -18.18051 -17.75116 -17.11546 -17.02432 -16.75602 -16.28581 -15.76960 -15.62509 -14.87524 -14.76695 -14.07351 -14.05325 -13.94545 -13.87145 -13.55583 -13.41392 -13.05722 -12.77572 -12.65264 -12.07300 -11.86696 -11.59870 -11.49178 -11.23602 -11.22270 -11.13842 -10.96158 -10.89428 -10.53552 -10.37899 -10.13230 -9.99064 -9.95073 -9.74115 -9.26469 -9.16580 -8.98107 -8.48514 -6.97553 -5.76540 -3.15867 2.85306 2.92192 3.35946 3.40607 3.41967 3.49300 3.80251 3.89735 4.15445 4.39116 4.61436 4.80530 4.88029 4.93921 5.08159 5.09762 5.20366 5.33089 5.44747 5.62892 5.66281 5.68717 5.75643 5.85444 6.03333 6.08819 6.12841 6.28952 6.40427 6.47281 6.58508 6.72245 6.73362 6.81064 6.93096 7.09381 7.30654 7.44792 7.77215 7.95154 8.13410 8.56435 9.04967 9.68319 10.49141 11.32565 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.002839 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.430772 B = 9859.487644 C =11152.631872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.151 0.849 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.129 3.871 17 H 0.077 0.923 18 N -0.703 5.703 19 C 0.515 3.485 20 O -0.558 6.558 21 C -0.141 4.141 22 C 0.081 3.919 23 O -0.380 6.380 24 C 0.011 3.989 25 C 0.271 3.729 26 F -0.199 7.199 27 F -0.200 7.200 28 C -0.142 4.142 29 H 0.255 0.745 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.404 0.596 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 -13.134 -13.228 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.049 3.951 11 H 0.168 0.832 12 C -0.179 4.179 13 C -0.168 4.168 14 C 0.017 3.983 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.095 0.905 18 N -0.352 5.352 19 C 0.301 3.699 20 O -0.437 6.437 21 C -0.181 4.181 22 C 0.004 3.996 23 O -0.299 6.299 24 C -0.067 4.067 25 C 0.217 3.783 26 F -0.181 7.181 27 F -0.182 7.182 28 C -0.183 4.183 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.077 0.923 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.060 -13.221 -13.192 18.926 hybrid contribution 0.667 1.052 0.028 1.246 sum 3.727 -12.169 -13.164 18.310 Atomic orbital electron populations 1.69476 1.05024 1.25161 1.57045 1.24702 0.95591 0.97507 1.02676 0.86145 0.78391 0.83041 0.77837 1.21224 1.21612 1.21277 1.18956 0.90183 0.81908 1.43442 0.90427 1.46495 1.01581 0.98533 1.84393 1.23684 0.87359 0.95168 0.88864 0.83204 1.23072 0.95246 0.98277 1.01293 1.22889 0.97741 0.97595 0.98571 1.23147 0.96030 0.86954 0.92172 0.89388 1.22648 0.92950 0.98381 0.83791 0.90468 1.45999 1.41816 1.36075 1.11263 1.20225 0.83098 0.81829 0.84778 1.90664 1.35514 1.32879 1.84646 1.21470 1.01963 1.02101 0.92608 1.22196 0.95518 0.98666 0.83185 1.87896 1.64024 1.57624 1.20394 1.23633 0.99571 0.96010 0.87488 1.22034 0.78105 0.81220 0.96914 1.93019 1.93859 1.38263 1.92937 1.93011 1.35010 1.95502 1.94653 1.23447 0.94954 0.98342 1.01529 0.93476 0.92613 0.93328 0.92444 0.93028 0.76126 0.87929 0.88167 0.92123 0.92018 0.90134 0.90085 0.85943 0.92274 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.60 10.48 55.49 0.58 -25.02 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -5.60 10.59 -15.06 -0.16 -5.76 16 8 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.59 -13.73 2.99 -145.82 -0.44 -14.17 16 10 C 0.16 3.51 4.68 -62.82 -0.29 3.21 16 11 H 0.15 3.89 5.57 -51.93 -0.29 3.60 16 12 C -0.14 -2.73 6.44 -24.24 -0.16 -2.88 16 13 C -0.13 -2.28 6.44 -24.21 -0.16 -2.44 16 14 C 0.13 2.39 5.04 -62.78 -0.32 2.08 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.13 2.35 2.73 -65.43 -0.18 2.17 16 17 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 18 N -0.70 -11.68 5.10 -51.40 -0.26 -11.94 16 19 C 0.51 8.20 7.83 -10.98 -0.09 8.11 16 20 O -0.56 -10.46 15.70 5.56 0.09 -10.37 16 21 C -0.14 -1.77 6.07 -27.88 -0.17 -1.94 16 22 C 0.08 0.95 5.23 37.16 0.19 1.15 16 23 O -0.38 -4.48 10.23 -35.23 -0.36 -4.84 16 24 C 0.01 0.09 6.16 37.16 0.23 0.31 16 25 C 0.27 2.05 5.63 37.16 0.21 2.26 16 26 F -0.20 -2.13 17.28 2.25 0.04 -2.09 16 27 F -0.20 -2.08 17.28 2.25 0.04 -2.04 16 28 C -0.14 -2.88 6.22 -24.26 -0.15 -3.04 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 31 H 0.05 0.85 7.81 -51.93 -0.41 0.44 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.81 7.83 -51.93 -0.41 0.40 16 34 H 0.40 6.47 8.62 -40.82 -0.35 6.12 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 43 H 0.05 1.01 7.81 -51.93 -0.41 0.61 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -31.42 358.96 -7.48 -38.90 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.43 Total: 7.01 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.13 Total: 2.91 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.12 Total: -51.13 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.27 Total: -15.21 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.42 -7.48 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110570673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.983 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds