Wall clock time and date at job start Fri Apr 10 2020 14:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99357 * 2 1 4 4 H 1.48505 * 109.46622 * 239.99328 * 3 2 1 5 5 H 1.48493 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47077 * 120.00069 * 3 2 1 7 7 C 1.38803 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00070 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.83627 * 0.02562 * 9 7 2 11 11 H 1.08991 * 116.45728 * 0.02562 * 10 9 7 12 12 C 1.55838 * 101.05018 * 233.98700 * 10 9 7 13 13 C 1.54852 * 103.44845 * 327.06689 * 12 10 9 14 14 C 1.50239 * 130.83966 * 180.02562 * 9 7 2 15 15 H 1.08996 * 116.45772 * 359.97438 * 14 9 7 16 16 C 1.55848 * 101.05019 * 233.94808 * 14 9 7 17 17 H 1.08997 * 110.75973 * 208.51096 * 16 14 9 18 18 N 1.46497 * 110.62425 * 85.55306 * 16 14 9 19 19 C 1.34780 * 119.99566 * 159.52368 * 18 16 14 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 O 1.42895 * 109.47503 * 180.02562 * 22 21 19 24 24 C 1.42902 * 114.00370 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47068 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.47606 * 300.00104 * 25 24 23 27 27 F 1.39900 * 109.46920 * 60.00160 * 25 24 23 28 28 C 1.54854 * 103.44541 * 327.06134 * 16 14 9 29 29 H 0.96994 * 120.00569 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.62482 * 85.55132 * 12 10 9 31 31 H 1.08998 * 110.62888 * 208.57443 * 12 10 9 32 32 H 1.08997 * 110.63011 * 118.49033 * 13 12 10 33 33 H 1.09007 * 110.62549 * 241.34776 * 13 12 10 34 34 H 0.96995 * 120.00423 * 339.51674 * 18 16 14 35 35 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 36 36 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 37 37 H 1.09002 * 109.47153 * 299.99998 * 22 21 19 38 38 H 1.08998 * 109.47533 * 59.99628 * 22 21 19 39 39 H 1.08999 * 109.46857 * 300.00103 * 24 23 22 40 40 H 1.09001 * 109.46918 * 59.99989 * 24 23 22 41 41 H 1.09000 * 109.46849 * 179.97438 * 25 24 23 42 42 H 1.08994 * 110.62574 * 118.48993 * 28 16 14 43 43 H 1.08994 * 110.62539 * 241.51295 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1498 -2.6706 -0.0005 11 1 -0.8103 -1.8036 -0.0018 12 6 -0.2750 -3.6095 1.2370 13 6 1.0661 -4.3836 1.2389 14 6 1.8190 -3.8071 0.0016 15 1 2.9001 -3.9455 0.0020 16 6 1.0677 -4.3854 -1.2354 17 1 0.8936 -5.4548 -1.1165 18 7 1.8179 -4.1197 -2.4654 19 6 1.5877 -4.8596 -3.5681 20 8 0.7598 -5.7456 -3.5421 21 6 2.3598 -4.5868 -4.8332 22 6 1.9104 -5.5600 -5.9249 23 8 2.6429 -5.3017 -7.1244 24 6 2.2980 -6.1612 -8.2127 25 6 3.1389 -5.7958 -9.4375 26 9 2.8886 -4.4667 -9.7955 27 9 4.4960 -5.9494 -9.1340 28 6 -0.2734 -3.6112 -1.2364 29 1 -0.4851 0.8399 -0.0004 30 1 -0.3831 -3.0266 2.1518 31 1 -1.1138 -4.2949 1.1158 32 1 1.6231 -4.1848 2.1545 33 1 0.8922 -5.4533 1.1213 34 1 2.4802 -3.4114 -2.4861 35 1 2.1735 -3.5635 -5.1591 36 1 3.4251 -4.7197 -4.6446 37 1 2.0971 -6.5832 -5.5989 38 1 0.8451 -5.4275 -6.1137 39 1 2.4926 -7.1967 -7.9336 40 1 1.2407 -6.0413 -8.4493 41 1 2.8761 -6.4517 -10.2674 42 1 -0.3804 -3.0297 -2.1520 43 1 -1.1123 -4.2964 -1.1153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110570673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:19 Heat of formation + Delta-G solvation = -167.090840 kcal Electronic energy + Delta-G solvation = -26960.506148 eV Core-core repulsion = 22676.685384 eV Total energy + Delta-G solvation = -4283.820763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.83057 -47.89511 -41.32620 -40.03926 -38.86204 -35.28115 -34.40666 -33.14109 -30.96375 -30.70179 -30.23294 -29.13000 -26.14893 -24.94661 -23.82851 -22.68089 -21.53605 -21.08155 -20.23962 -18.90794 -18.84496 -18.42121 -18.03888 -17.62155 -17.22836 -17.09451 -16.73018 -16.56965 -15.97015 -15.67234 -15.35149 -15.08644 -14.79463 -14.64957 -14.28093 -14.26433 -14.02676 -13.69143 -13.62125 -13.36477 -12.90098 -12.85623 -12.77948 -12.66497 -12.42758 -12.35696 -12.09628 -11.97747 -11.89126 -11.83825 -11.70045 -11.22333 -10.94895 -10.91718 -10.78576 -10.65361 -9.92876 -8.86214 -7.74917 -5.14502 1.50425 1.51586 1.57449 1.64621 1.97564 2.51369 2.67097 3.01640 3.38495 3.40604 3.46133 3.60271 3.74900 3.95594 4.00616 4.04169 4.11010 4.26966 4.29062 4.34699 4.46781 4.47953 4.51826 4.52595 4.65214 4.71214 4.76965 4.80922 4.84804 4.92350 5.10416 5.18468 5.20270 5.39506 5.53241 5.61474 5.73011 5.91501 5.96015 6.26987 6.63981 7.07009 7.27071 7.73936 8.59711 9.32458 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.002839 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.430772 B = 9859.487644 C =11152.631872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.282 1.282 7 C -0.215 4.215 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.141 3.859 11 H 0.112 0.888 12 C -0.133 4.133 13 C -0.119 4.119 14 C 0.127 3.873 15 H 0.105 0.895 16 C 0.140 3.860 17 H 0.087 0.913 18 N -0.704 5.704 19 C 0.517 3.483 20 O -0.585 6.585 21 C -0.135 4.135 22 C 0.087 3.913 23 O -0.403 6.403 24 C 0.000 4.000 25 C 0.262 3.738 26 F -0.221 7.221 27 F -0.219 7.219 28 C -0.133 4.133 29 H 0.245 0.755 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.407 0.593 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.177 0.823 42 H 0.032 0.968 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -15.096 -13.983 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.208 1.208 7 C -0.344 4.344 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.034 3.966 11 H 0.129 0.871 12 C -0.172 4.172 13 C -0.159 4.159 14 C 0.020 3.980 15 H 0.123 0.877 16 C 0.033 3.967 17 H 0.105 0.895 18 N -0.353 5.353 19 C 0.304 3.696 20 O -0.466 6.466 21 C -0.174 4.174 22 C 0.010 3.990 23 O -0.323 6.323 24 C -0.077 4.077 25 C 0.209 3.791 26 F -0.203 7.203 27 F -0.201 7.201 28 C -0.173 4.173 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.243 0.757 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.193 0.807 42 H 0.051 0.949 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.324 -15.215 -13.958 21.096 hybrid contribution 0.262 1.589 0.224 1.626 sum 4.586 -13.626 -13.734 19.883 Atomic orbital electron populations 1.69738 1.06220 1.24825 1.59060 1.25419 0.96287 1.00350 1.03912 0.85219 0.77020 0.79495 0.77967 1.20504 1.22854 1.20830 1.19327 0.90796 0.82994 1.41272 0.89603 1.46680 1.02157 0.99646 1.84563 1.23511 0.86758 0.94984 0.91309 0.87067 1.22970 0.97409 0.98025 0.98823 1.22845 0.96135 0.98997 0.97913 1.23368 0.97219 0.84497 0.92948 0.87700 1.22440 0.91702 0.98274 0.84250 0.89484 1.45988 1.41738 1.36378 1.11189 1.20727 0.82639 0.80903 0.85313 1.90648 1.36769 1.34066 1.85128 1.21428 1.02428 1.02464 0.91106 1.22064 0.95106 0.98477 0.83312 1.87854 1.64332 1.59029 1.21086 1.23980 1.00706 0.96580 0.86410 1.22714 0.76944 0.80871 0.98538 1.92973 1.93914 1.40239 1.93136 1.92969 1.36671 1.95517 1.94932 1.23306 0.96890 0.97950 0.99168 0.94578 0.94430 0.91108 0.92249 0.89898 0.75739 0.87689 0.86308 0.91739 0.92682 0.87956 0.88423 0.80677 0.94910 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.65 10.48 21.65 0.23 -54.42 16 2 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.22 -11.06 10.59 84.03 0.89 -10.17 16 8 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -28.14 2.99 -615.26 -1.84 -29.98 16 10 C 0.14 6.40 4.68 46.21 0.22 6.62 16 11 H 0.11 6.03 5.57 -2.39 -0.01 6.01 16 12 C -0.13 -5.06 6.44 32.21 0.21 -4.85 16 13 C -0.12 -3.94 6.44 32.23 0.21 -3.73 16 14 C 0.13 4.56 5.04 46.24 0.23 4.80 16 15 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 16 C 0.14 4.86 2.73 46.61 0.13 4.99 16 17 H 0.09 2.92 7.37 -2.39 -0.02 2.90 16 18 N -0.70 -22.37 5.10 -434.91 -2.22 -24.59 16 19 C 0.52 15.69 7.83 87.66 0.69 16.37 16 20 O -0.58 -21.10 15.70 -3.03 -0.05 -21.15 16 21 C -0.13 -3.15 6.07 29.85 0.18 -2.97 16 22 C 0.09 1.92 5.23 71.98 0.38 2.30 16 23 O -0.40 -8.86 10.23 -148.98 -1.52 -10.39 16 24 C 0.00 0.00 6.16 71.98 0.44 0.45 16 25 C 0.26 3.39 5.63 71.98 0.41 3.80 16 26 F -0.22 -4.47 17.28 44.97 0.78 -3.69 16 27 F -0.22 -4.24 17.28 44.97 0.78 -3.46 16 28 C -0.13 -5.33 6.22 32.20 0.20 -5.13 16 29 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 2.35 7.81 -2.39 -0.02 2.33 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.26 7.83 -2.38 -0.02 2.24 16 34 H 0.41 12.48 8.62 -92.71 -0.80 11.68 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.03 1.46 7.98 -2.39 -0.02 1.44 16 43 H 0.06 2.42 7.81 -2.39 -0.02 2.40 16 Total: -1.00 -69.13 358.96 3.05 -66.08 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.23 Total: 25.94 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 4.64 Total: 9.31 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.83 Total: -108.99 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.57 Total: -31.53 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 1.55 Total: -7.16 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.13 3.05 -66.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110570673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.013 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds