Wall clock time and date at job start Fri Apr 10 2020 14:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00176 * 2 1 4 4 H 1.48504 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47335 * 299.99728 * 3 2 1 6 6 H 1.48493 * 109.47377 * 59.99867 * 3 2 1 7 7 C 1.38952 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00508 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99667 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99948 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99716 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00073 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47140 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99713 * 179.97438 * 13 12 10 15 15 H 1.09001 * 110.92124 * 328.90671 * 14 13 12 16 16 C 1.55154 * 111.00388 * 204.99628 * 14 13 12 17 17 C 1.54318 * 102.94861 * 206.42486 * 16 14 13 18 18 N 1.47032 * 107.26592 * 22.19889 * 17 16 14 19 19 C 1.34781 * 125.64550 * 181.09427 * 18 17 16 20 20 O 1.21553 * 119.99615 * 174.36602 * 19 18 17 21 21 C 1.47838 * 119.99811 * 354.36835 * 19 18 17 22 22 C 1.40016 * 120.56572 * 6.91410 * 21 19 18 23 23 C 1.38358 * 118.29247 * 179.97438 * 22 21 19 24 24 C 1.38351 * 119.30042 * 0.02562 * 23 22 21 25 25 N 1.31923 * 121.07983 * 359.97438 * 24 23 22 26 26 C 1.31692 * 121.88214 * 359.77136 * 25 24 23 27 27 C 1.47425 * 108.70415 * 1.05664 * 18 17 16 28 28 H 0.97003 * 119.99681 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99674 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47125 * 59.99808 * 12 10 9 31 31 H 1.09001 * 109.47526 * 299.99786 * 12 10 9 32 32 H 1.00899 * 110.99793 * 303.95247 * 13 12 10 33 33 H 1.08999 * 110.72214 * 324.79349 * 16 14 13 34 34 H 1.09003 * 110.71776 * 88.06133 * 16 14 13 35 35 H 1.09005 * 109.88574 * 141.60686 * 17 16 14 36 36 H 1.08991 * 109.88664 * 262.78062 * 17 16 14 37 37 H 1.08007 * 120.85403 * 359.95849 * 22 21 19 38 38 H 1.07998 * 120.34569 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.45744 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.71933 * 180.24406 * 26 25 24 41 41 H 1.08997 * 110.36088 * 217.03823 * 27 18 17 42 42 H 1.08991 * 110.36870 * 94.71184 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4979 -7.2708 0.0039 15 1 0.5461 -7.1969 0.5299 16 6 2.3870 -8.3851 0.6164 17 6 1.8494 -9.6655 -0.0566 18 7 1.1777 -9.2564 -1.2989 19 6 0.5569 -10.0820 -2.1647 20 8 -0.0545 -9.6232 -3.1099 21 6 0.6194 -11.5454 -1.9648 22 6 1.1949 -12.0819 -0.8066 23 6 1.2281 -13.4581 -0.6677 24 6 0.6972 -14.2525 -1.6682 25 7 0.1611 -13.7190 -2.7491 26 6 0.1015 -12.4153 -2.9250 27 6 1.2950 -7.7936 -1.4402 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6174 -4.9212 -0.8880 31 1 0.6167 -4.9201 0.8919 32 1 2.8331 -5.9128 -0.7787 33 1 3.4348 -8.2263 0.3616 34 1 2.2549 -8.4331 1.6974 35 1 2.6755 -10.3385 -0.2863 36 1 1.1377 -10.1607 0.6038 37 1 1.6027 -11.4379 -0.0413 38 1 1.6638 -13.9073 0.2125 39 1 0.7221 -15.3271 -1.5626 40 1 -0.3488 -12.0160 -3.8217 41 1 0.3823 -7.3796 -1.8688 42 1 2.1551 -7.5401 -2.0598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180688471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:35 Heat of formation + Delta-G solvation = -1.666243 kcal Electronic energy + Delta-G solvation = -25311.011510 eV Core-core repulsion = 21485.053282 eV Total energy + Delta-G solvation = -3825.958228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21331 -39.73847 -38.44167 -37.73532 -35.07616 -33.90245 -33.09179 -31.86280 -31.28837 -30.89268 -28.96198 -26.46005 -25.33625 -24.10905 -23.74537 -22.99578 -21.10579 -20.41185 -19.34579 -18.00204 -17.79201 -17.31917 -16.96405 -16.56516 -15.89028 -15.73619 -15.49403 -14.86688 -14.64707 -14.55326 -14.29129 -14.06504 -13.92955 -13.80406 -13.52711 -13.24200 -12.95506 -12.74561 -12.50887 -12.37559 -11.89888 -11.60597 -11.51165 -11.34675 -11.08026 -11.03979 -10.52177 -10.40283 -10.36206 -10.25121 -9.84520 -9.66716 -9.55103 -9.04080 -8.54899 -8.19175 -7.99690 -6.44554 -3.85559 0.21838 0.73559 2.47006 2.50874 3.14670 3.25635 3.32636 3.41925 3.80679 3.85880 3.94208 4.11352 4.16118 4.31530 4.33661 4.37799 4.48207 4.57683 4.65574 4.86711 4.94662 4.99115 5.09568 5.15014 5.22388 5.23361 5.46895 5.50578 5.53892 5.55171 5.70032 5.77183 5.79562 5.90353 5.91511 6.13505 6.21701 7.05373 7.06613 7.43312 7.47621 7.52905 7.75210 8.02996 8.57297 9.14744 9.50599 10.01319 10.73086 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.038499 B = 0.002009 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.117660 B =13930.748843 C =14373.080798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.651 5.651 14 C 0.077 3.923 15 H 0.095 0.905 16 C -0.123 4.123 17 C 0.087 3.913 18 N -0.609 5.609 19 C 0.577 3.423 20 O -0.531 6.531 21 C -0.182 4.182 22 C -0.078 4.078 23 C -0.181 4.181 24 C 0.118 3.882 25 N -0.489 5.489 26 C 0.159 3.841 27 C 0.075 3.925 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.354 0.646 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.171 0.829 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.083 0.917 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 -26.380 1.401 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.283 5.283 14 C -0.035 4.035 15 H 0.113 0.887 16 C -0.161 4.161 17 C -0.036 4.036 18 N -0.342 5.342 19 C 0.365 3.635 20 O -0.408 6.408 21 C -0.188 4.188 22 C -0.104 4.104 23 C -0.200 4.200 24 C -0.038 4.038 25 N -0.197 5.197 26 C 0.001 3.999 27 C -0.049 4.049 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.188 0.812 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.101 0.899 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.231 -26.522 0.876 26.537 hybrid contribution -0.242 1.295 -0.205 1.333 sum -0.011 -25.227 0.671 25.236 Atomic orbital electron populations 1.69621 1.05954 1.28126 1.50465 1.25281 0.95651 0.99792 0.97257 0.85790 0.79703 0.81068 0.77721 1.19197 1.20750 1.20728 1.19756 0.93412 0.82176 1.47585 0.87813 1.41870 1.09243 1.04623 1.64118 1.19751 0.88366 0.84677 0.84718 1.90530 1.13703 1.87042 1.55570 1.21769 0.94355 0.90887 1.01490 1.60150 1.18051 0.98988 1.51072 1.22820 0.97620 0.89925 0.93133 0.88705 1.22733 1.00932 0.91604 1.00861 1.22648 0.96645 0.98578 0.85690 1.48223 1.54923 1.08155 1.22946 1.17752 0.78607 0.85308 0.81787 1.90816 1.42029 1.77210 1.30757 1.20932 1.05294 0.94326 0.98204 1.23221 0.93518 0.96603 0.97022 1.22204 1.02319 0.94190 1.01330 1.23093 0.91173 1.00993 0.88579 1.67842 1.15886 1.13320 1.22678 1.23058 0.91578 0.87743 0.97512 1.23226 1.03020 0.79254 0.99429 0.91872 0.77424 0.93503 0.89337 0.82550 0.89410 0.89122 0.90275 0.90280 0.81238 0.83983 0.82237 0.81389 0.89873 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 11 O -0.58 -15.42 15.78 5.54 0.09 -15.33 16 12 C 0.05 0.78 6.03 -4.98 -0.03 0.75 16 13 N -0.65 -9.36 6.04 -105.72 -0.64 -10.00 16 14 C 0.08 0.81 3.38 -65.56 -0.22 0.59 16 15 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 16 C -0.12 -0.96 6.65 -24.90 -0.17 -1.13 16 17 C 0.09 0.58 4.87 -3.06 -0.01 0.56 16 18 N -0.61 -6.18 3.33 -172.49 -0.57 -6.75 16 19 C 0.58 6.94 7.81 -12.33 -0.10 6.85 16 20 O -0.53 -8.30 16.62 5.32 0.09 -8.21 16 21 C -0.18 -1.78 5.89 -104.82 -0.62 -2.39 16 22 C -0.08 -0.53 8.70 -38.87 -0.34 -0.87 16 23 C -0.18 -0.99 10.10 -39.50 -0.40 -1.39 16 24 C 0.12 0.80 11.17 -17.47 -0.20 0.61 16 25 N -0.49 -4.75 10.35 -12.91 -0.13 -4.88 16 26 C 0.16 1.62 10.77 -17.13 -0.18 1.44 16 27 C 0.07 0.83 6.53 -2.53 -0.02 0.82 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 32 H 0.35 5.32 7.89 -39.29 -0.31 5.01 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.41 6.74 -51.93 -0.35 0.06 16 36 H 0.08 0.39 6.74 -51.93 -0.35 0.04 16 37 H 0.17 0.78 2.92 -53.60 -0.16 0.63 16 38 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 39 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.17 1.69 7.68 -52.49 -0.40 1.28 16 41 H 0.08 1.04 7.98 -51.93 -0.41 0.62 16 42 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -34.40 353.74 -7.96 -42.36 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.16 Total: 11.42 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.61 Total: 7.86 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.68 Total: -59.29 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.18 Total: -23.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.40 -7.96 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180688471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds