Wall clock time and date at job start Fri Apr 10 2020 14:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48506 * 109.47140 * 240.00364 * 3 2 1 5 5 H 1.48507 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46997 * 120.00250 * 3 2 1 7 7 C 1.37885 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47277 * 175.03792 * 9 7 2 11 11 C 1.46896 * 110.99925 * 295.09900 * 10 9 7 12 12 C 1.53243 * 109.34111 * 187.25352 * 11 10 9 13 13 N 1.47081 * 108.51626 * 306.16498 * 12 11 10 14 14 C 1.34779 * 120.88279 * 231.18162 * 13 12 11 15 15 O 1.21527 * 119.99526 * 5.47701 * 14 13 12 16 16 C 1.47972 * 119.99988 * 185.46945 * 14 13 12 17 17 C 1.39850 * 120.59217 * 55.53917 * 16 14 13 18 18 C 1.38462 * 118.34631 * 179.97438 * 17 16 14 19 19 C 1.38585 * 119.46289 * 359.97438 * 18 17 16 20 20 N 1.31638 * 121.17994 * 0.02562 * 19 18 17 21 21 C 1.32467 * 121.79683 * 359.71868 * 20 19 18 22 22 C 1.48314 * 119.80134 * 180.29409 * 21 20 19 23 23 N 1.34779 * 119.99562 * 6.04950 * 22 21 20 24 24 O 1.21490 * 120.00108 * 186.05927 * 22 21 20 25 25 C 1.47081 * 118.23678 * 51.46104 * 13 12 11 26 26 C 1.46899 * 110.99717 * 59.39612 * 10 9 7 27 27 H 0.96994 * 120.00159 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47281 * 55.03805 * 9 7 2 29 29 H 1.08996 * 109.47340 * 295.03995 * 9 7 2 30 30 H 1.08993 * 109.49825 * 67.28838 * 11 10 9 31 31 H 1.09009 * 109.49411 * 307.21020 * 11 10 9 32 32 H 1.09001 * 109.62949 * 186.45773 * 12 11 10 33 33 H 1.09001 * 109.63133 * 65.87554 * 12 11 10 34 34 H 1.07996 * 120.82359 * 359.95054 * 17 16 14 35 35 H 1.08011 * 120.26895 * 179.97438 * 18 17 16 36 36 H 1.08005 * 119.41237 * 179.97438 * 19 18 17 37 37 H 0.96993 * 120.00501 * 0.02562 * 23 22 21 38 38 H 0.97003 * 119.99270 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.63231 * 68.24765 * 25 13 12 40 40 H 1.08998 * 109.62691 * 188.83003 * 25 13 12 41 41 H 1.09002 * 109.49303 * 292.70633 * 26 10 9 42 42 H 1.08998 * 109.49286 * 52.78638 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6132 -0.1209 11 6 2.8895 -3.5800 -1.4182 12 6 3.7316 -4.8502 -1.5784 13 7 4.6146 -4.9759 -0.4089 14 6 5.9392 -5.1732 -0.5601 15 8 6.4341 -5.1500 -1.6698 16 6 6.7909 -5.4177 0.6250 17 6 6.4983 -6.4614 1.5087 18 6 7.3265 -6.6486 2.6023 19 6 8.4109 -5.8059 2.7883 20 7 8.6679 -4.8294 1.9437 21 6 7.9107 -4.6099 0.8792 22 6 8.2449 -3.5008 -0.0470 23 7 9.3817 -2.7977 0.1261 24 8 7.4939 -3.2259 -0.9616 25 6 4.0126 -4.8870 0.9302 26 6 3.1603 -3.6095 0.9916 27 1 -0.4850 0.8400 -0.0004 28 1 0.5590 -2.5192 -0.8425 29 1 0.6931 -2.5966 0.9307 30 1 3.5383 -2.7053 -1.4634 31 1 2.1527 -3.5286 -2.2198 32 1 4.3327 -4.7791 -2.4850 33 1 3.0762 -5.7191 -1.6375 34 1 5.6472 -7.1050 1.3423 35 1 7.1291 -7.4449 3.3048 36 1 9.0562 -5.9524 3.6419 37 1 9.9814 -3.0173 0.8561 38 1 9.6004 -2.0726 -0.4800 39 1 3.3836 -5.7593 1.1077 40 1 4.7995 -4.8403 1.6830 41 1 3.8054 -2.7344 0.9128 42 1 2.6198 -3.5795 1.9377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363627046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:22 Heat of formation + Delta-G solvation = -12.954421 kcal Electronic energy + Delta-G solvation = -27392.544363 eV Core-core repulsion = 23566.096642 eV Total energy + Delta-G solvation = -3826.447720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19690 -39.33130 -38.77901 -37.31920 -34.43902 -33.92388 -32.86945 -32.21620 -31.80196 -30.48881 -28.14174 -25.74479 -25.05598 -24.40481 -23.11936 -22.26951 -21.27782 -20.58223 -19.03112 -18.25283 -17.44117 -17.20128 -16.47804 -16.26216 -15.87646 -15.44024 -15.13908 -14.77038 -14.70438 -14.43263 -14.34392 -13.79269 -13.68776 -13.64471 -13.49720 -13.29099 -12.70919 -12.56529 -12.17261 -11.81478 -11.12079 -11.07205 -10.98096 -10.69292 -10.59331 -10.55958 -10.32569 -10.15873 -9.92290 -9.89324 -9.71458 -9.65512 -9.59720 -9.38007 -8.43689 -8.33011 -7.23700 -6.03963 -4.12862 0.22780 0.67374 2.58006 2.86076 3.17543 3.19360 3.29651 3.33843 3.38361 3.61307 3.91344 4.37666 4.41167 4.41351 4.57303 4.61261 4.91563 5.02918 5.08608 5.26258 5.34346 5.51089 5.55134 5.59269 5.63966 5.75655 5.92545 6.03172 6.11116 6.15444 6.43409 6.63972 6.69745 6.80217 6.83724 7.12816 7.22288 7.40484 7.49787 7.62263 7.88124 7.99346 8.18418 8.20186 8.27166 8.40464 8.96877 9.54507 11.01202 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.004212 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.963840 B = 6645.348905 C = 7313.026297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.050 3.950 12 C 0.120 3.880 13 N -0.600 5.600 14 C 0.565 3.435 15 O -0.508 6.508 16 C -0.111 4.111 17 C -0.052 4.052 18 C -0.151 4.151 19 C 0.108 3.892 20 N -0.460 5.460 21 C 0.118 3.882 22 C 0.562 3.438 23 N -0.839 5.839 24 O -0.490 6.490 25 C 0.109 3.891 26 C 0.050 3.950 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.408 0.592 38 H 0.406 0.594 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.353 -14.355 7.305 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.002 4.002 13 N -0.334 5.334 14 C 0.351 3.649 15 O -0.383 6.383 16 C -0.118 4.118 17 C -0.078 4.078 18 C -0.171 4.171 19 C -0.051 4.051 20 N -0.172 5.172 21 C -0.022 4.022 22 C 0.343 3.657 23 N -0.404 5.404 24 O -0.362 6.362 25 C -0.014 4.014 26 C -0.080 4.080 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.237 0.763 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.266 -14.043 6.270 22.385 hybrid contribution 0.570 1.486 0.255 1.612 sum 16.836 -12.557 6.525 21.993 Atomic orbital electron populations 1.69925 1.05968 1.26971 1.50067 1.24933 0.94740 0.99088 0.94800 0.86726 0.79713 0.83301 0.78738 1.20183 1.21129 1.20329 1.21717 0.93286 0.92118 1.51881 0.92642 1.19758 0.90692 0.85346 0.97939 1.62504 1.16428 1.46932 1.00493 1.22236 0.96752 0.95491 0.93435 1.21833 0.91562 0.98747 0.88066 1.47987 1.05989 1.71108 1.08284 1.17756 0.81679 0.77588 0.87920 1.90783 1.72532 1.49577 1.25360 1.20979 0.96664 0.97205 0.96909 1.21817 0.98777 0.95323 0.91920 1.22337 0.95608 1.00895 0.98286 1.22938 0.95354 0.89659 0.97112 1.67560 1.28497 1.18700 1.02398 1.21191 0.91789 0.95827 0.93410 1.17862 0.82218 0.81745 0.83842 1.43547 1.23953 1.37374 1.35514 1.91028 1.48706 1.66039 1.30387 1.22118 0.96458 0.99856 0.82948 1.22297 0.94602 0.94852 0.96207 0.92738 0.94598 0.95261 0.93707 0.90349 0.89323 0.91293 0.83303 0.83383 0.81512 0.76287 0.76318 0.90887 0.91055 0.93819 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.55 -15.30 7.76 -34.44 -0.27 -15.57 16 8 H 0.06 1.58 5.88 -52.48 -0.31 1.27 16 9 C 0.19 4.79 5.11 -4.98 -0.03 4.76 16 10 N -0.54 -11.38 4.83 -235.47 -1.14 -12.51 16 11 C 0.05 1.02 5.25 -3.70 -0.02 1.00 16 12 C 0.12 2.08 6.61 -3.60 -0.02 2.05 16 13 N -0.60 -10.06 3.00 -173.24 -0.52 -10.58 16 14 C 0.57 9.89 5.82 -12.27 -0.07 9.82 16 15 O -0.51 -10.65 14.19 -18.68 -0.27 -10.91 16 16 C -0.11 -1.55 4.58 -104.49 -0.48 -2.03 16 17 C -0.05 -0.50 8.06 -38.90 -0.31 -0.81 16 18 C -0.15 -1.03 10.10 -39.37 -0.40 -1.43 16 19 C 0.11 0.82 11.17 -17.51 -0.20 0.62 16 20 N -0.46 -4.96 9.55 -9.51 -0.09 -5.06 16 21 C 0.12 1.63 6.78 -82.64 -0.56 1.07 16 22 C 0.56 8.80 7.99 -12.11 -0.10 8.70 16 23 N -0.84 -9.17 8.86 30.64 0.27 -8.89 16 24 O -0.49 -9.99 13.80 -18.65 -0.26 -10.25 16 25 C 0.11 1.62 5.86 -3.36 -0.02 1.60 16 26 C 0.05 0.95 5.17 -3.46 -0.02 0.93 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 1.05 7.11 -51.93 -0.37 0.68 16 31 H 0.08 1.56 8.06 -51.92 -0.42 1.14 16 32 H 0.09 1.60 7.04 -51.93 -0.37 1.23 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.15 1.14 7.90 -52.49 -0.41 0.73 16 35 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.41 3.43 8.18 -40.82 -0.33 3.09 16 38 H 0.41 3.85 8.93 -40.82 -0.36 3.49 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.93 5.59 -51.93 -0.29 0.64 16 41 H 0.04 0.96 6.61 -51.93 -0.34 0.62 16 42 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -36.19 344.44 -8.97 -45.17 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.30 Total: 3.84 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -2.58 Total: 12.53 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.74 Total: -62.53 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.52 Total: -21.16 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.19 -8.97 -45.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363627046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.214 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds