Wall clock time and date at job start Fri Apr 10 2020 14:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48506 * 109.47140 * 240.00364 * 3 2 1 5 5 H 1.48507 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46997 * 120.00250 * 3 2 1 7 7 C 1.37885 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47277 * 175.03792 * 9 7 2 11 11 C 1.46896 * 110.99925 * 295.09900 * 10 9 7 12 12 C 1.53243 * 109.34111 * 187.25352 * 11 10 9 13 13 N 1.47081 * 108.51626 * 306.16498 * 12 11 10 14 14 C 1.34779 * 120.88279 * 231.18162 * 13 12 11 15 15 O 1.21527 * 119.99526 * 5.47701 * 14 13 12 16 16 C 1.47972 * 119.99988 * 185.46945 * 14 13 12 17 17 C 1.39850 * 120.59217 * 55.53917 * 16 14 13 18 18 C 1.38462 * 118.34631 * 179.97438 * 17 16 14 19 19 C 1.38585 * 119.46289 * 359.97438 * 18 17 16 20 20 N 1.31638 * 121.17994 * 0.02562 * 19 18 17 21 21 C 1.32467 * 121.79683 * 359.71868 * 20 19 18 22 22 C 1.48314 * 119.80134 * 180.29409 * 21 20 19 23 23 N 1.34779 * 119.99562 * 6.04950 * 22 21 20 24 24 O 1.21490 * 120.00108 * 186.05927 * 22 21 20 25 25 C 1.47081 * 118.23678 * 51.46104 * 13 12 11 26 26 C 1.46899 * 110.99717 * 59.39612 * 10 9 7 27 27 H 0.96994 * 120.00159 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47281 * 55.03805 * 9 7 2 29 29 H 1.08996 * 109.47340 * 295.03995 * 9 7 2 30 30 H 1.08993 * 109.49825 * 67.28838 * 11 10 9 31 31 H 1.09009 * 109.49411 * 307.21020 * 11 10 9 32 32 H 1.09001 * 109.62949 * 186.45773 * 12 11 10 33 33 H 1.09001 * 109.63133 * 65.87554 * 12 11 10 34 34 H 1.07996 * 120.82359 * 359.95054 * 17 16 14 35 35 H 1.08011 * 120.26895 * 179.97438 * 18 17 16 36 36 H 1.08005 * 119.41237 * 179.97438 * 19 18 17 37 37 H 0.96993 * 120.00501 * 0.02562 * 23 22 21 38 38 H 0.97003 * 119.99270 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.63231 * 68.24765 * 25 13 12 40 40 H 1.08998 * 109.62691 * 188.83003 * 25 13 12 41 41 H 1.09002 * 109.49303 * 292.70633 * 26 10 9 42 42 H 1.08998 * 109.49286 * 52.78638 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6132 -0.1209 11 6 2.8895 -3.5800 -1.4182 12 6 3.7316 -4.8502 -1.5784 13 7 4.6146 -4.9759 -0.4089 14 6 5.9392 -5.1732 -0.5601 15 8 6.4341 -5.1500 -1.6698 16 6 6.7909 -5.4177 0.6250 17 6 6.4983 -6.4614 1.5087 18 6 7.3265 -6.6486 2.6023 19 6 8.4109 -5.8059 2.7883 20 7 8.6679 -4.8294 1.9437 21 6 7.9107 -4.6099 0.8792 22 6 8.2449 -3.5008 -0.0470 23 7 9.3817 -2.7977 0.1261 24 8 7.4939 -3.2259 -0.9616 25 6 4.0126 -4.8870 0.9302 26 6 3.1603 -3.6095 0.9916 27 1 -0.4850 0.8400 -0.0004 28 1 0.5590 -2.5192 -0.8425 29 1 0.6931 -2.5966 0.9307 30 1 3.5383 -2.7053 -1.4634 31 1 2.1527 -3.5286 -2.2198 32 1 4.3327 -4.7791 -2.4850 33 1 3.0762 -5.7191 -1.6375 34 1 5.6472 -7.1050 1.3423 35 1 7.1291 -7.4449 3.3048 36 1 9.0562 -5.9524 3.6419 37 1 9.9814 -3.0173 0.8561 38 1 9.6004 -2.0726 -0.4800 39 1 3.3836 -5.7593 1.1077 40 1 4.7995 -4.8403 1.6830 41 1 3.8054 -2.7344 0.9128 42 1 2.6198 -3.5795 1.9377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363627046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:21 Heat of formation + Delta-G solvation = -42.685978 kcal Electronic energy + Delta-G solvation = -27393.833620 eV Core-core repulsion = 23566.096642 eV Total energy + Delta-G solvation = -3827.736977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16839 -40.62048 -39.81798 -38.88109 -36.05822 -34.99116 -34.42402 -33.60812 -32.67435 -31.87267 -29.90260 -27.40362 -26.16190 -25.40070 -24.59512 -23.96193 -22.36606 -21.95798 -20.40461 -19.26713 -18.68175 -18.37433 -18.12077 -17.46022 -16.99568 -16.78372 -16.39775 -16.17486 -16.03912 -15.90528 -15.60121 -15.43067 -15.04992 -14.86297 -14.58920 -14.27629 -14.21356 -13.75463 -13.59627 -13.48696 -13.03349 -12.98374 -12.57891 -12.52634 -12.25884 -12.02492 -11.88138 -11.74611 -11.59744 -11.12723 -10.92107 -10.77168 -10.65842 -10.62778 -10.27012 -9.74566 -9.11004 -8.22049 -6.40077 -0.61643 -0.03677 1.28857 1.30715 1.39024 1.57010 1.67447 1.97958 2.26059 2.31160 2.74279 3.03099 3.10418 3.25877 3.36424 3.75814 3.84483 3.91045 3.98781 4.06737 4.19558 4.31932 4.38570 4.45175 4.47491 4.59772 4.71112 4.83374 4.88698 4.99312 5.00690 5.13321 5.18279 5.27798 5.44654 5.50301 5.68629 5.75364 5.96227 6.12550 6.23088 6.36950 6.39331 6.64595 6.79100 7.09251 7.22503 7.30805 8.80355 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.004212 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.963840 B = 6645.348905 C = 7313.026297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.041 0.959 9 C 0.200 3.800 10 N -0.527 5.527 11 C 0.057 3.943 12 C 0.130 3.870 13 N -0.605 5.605 14 C 0.562 3.438 15 O -0.555 6.555 16 C -0.139 4.139 17 C -0.053 4.053 18 C -0.123 4.123 19 C 0.112 3.888 20 N -0.466 5.466 21 C 0.091 3.909 22 C 0.549 3.451 23 N -0.817 5.817 24 O -0.555 6.555 25 C 0.122 3.878 26 C 0.049 3.951 27 H 0.267 0.733 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.001 0.999 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.172 0.828 35 H 0.199 0.801 36 H 0.213 0.787 37 H 0.421 0.579 38 H 0.411 0.589 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.005 0.995 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.824 -16.663 10.533 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.598 4.598 8 H 0.059 0.941 9 C 0.074 3.926 10 N -0.250 5.250 11 C -0.073 4.073 12 C 0.007 3.993 13 N -0.338 5.338 14 C 0.350 3.650 15 O -0.432 6.432 16 C -0.146 4.146 17 C -0.078 4.078 18 C -0.142 4.142 19 C -0.047 4.047 20 N -0.177 5.177 21 C -0.047 4.047 22 C 0.332 3.668 23 N -0.382 5.382 24 O -0.431 6.431 25 C 0.000 4.000 26 C -0.081 4.081 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.020 0.980 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.189 0.811 35 H 0.216 0.784 36 H 0.229 0.771 37 H 0.254 0.746 38 H 0.243 0.757 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.023 0.977 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.785 -16.352 9.550 25.979 hybrid contribution 0.209 2.146 -0.632 2.247 sum 17.994 -14.206 8.918 24.599 Atomic orbital electron populations 1.70012 1.07096 1.27982 1.50700 1.25656 0.95580 1.02251 0.94492 0.85791 0.78655 0.79780 0.78556 1.20678 1.19712 1.19630 1.21885 0.92727 0.93521 1.51714 0.94066 1.19451 0.91005 0.86091 0.96073 1.62468 1.16677 1.44355 1.01545 1.22179 0.96229 0.95711 0.93158 1.21654 0.91407 0.97827 0.88381 1.48099 1.06141 1.70980 1.08627 1.18373 0.81731 0.76226 0.88672 1.90737 1.73260 1.51538 1.27702 1.20824 0.96837 0.99838 0.97074 1.22158 1.00050 0.93959 0.91669 1.22896 0.93429 1.00696 0.97151 1.23846 0.95848 0.88002 0.96970 1.67586 1.28027 1.20174 1.01944 1.20909 0.92985 0.96138 0.94685 1.18435 0.82407 0.82380 0.83607 1.43412 1.22789 1.36468 1.35506 1.90991 1.50841 1.68123 1.33159 1.22169 0.96760 0.98449 0.82609 1.22392 0.94055 0.95989 0.95641 0.92382 0.96991 0.96536 0.98030 0.90498 0.90600 0.88301 0.81099 0.78385 0.77064 0.74634 0.75700 0.87353 0.88632 0.97685 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.03 13.29 21.45 0.28 -54.74 16 2 C 0.02 1.19 5.46 84.66 0.46 1.65 16 3 Si 0.95 46.03 29.54 68.60 2.03 48.06 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 5 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.56 -32.30 7.76 25.60 0.20 -32.10 16 8 H 0.04 2.47 5.88 -2.91 -0.02 2.45 16 9 C 0.20 10.59 5.11 85.56 0.44 11.03 16 10 N -0.53 -22.74 4.83 -898.89 -4.34 -27.08 16 11 C 0.06 2.42 5.25 86.39 0.45 2.87 16 12 C 0.13 4.59 6.61 86.35 0.57 5.16 16 13 N -0.61 -20.26 3.00 -820.30 -2.46 -22.72 16 14 C 0.56 20.04 5.82 86.82 0.51 20.54 16 15 O -0.55 -24.56 14.19 19.17 0.27 -24.29 16 16 C -0.14 -3.72 4.58 -19.78 -0.09 -3.81 16 17 C -0.05 -0.80 8.06 22.71 0.18 -0.61 16 18 C -0.12 -0.92 10.10 22.41 0.23 -0.70 16 19 C 0.11 1.11 11.17 84.80 0.95 2.06 16 20 N -0.47 -8.78 9.55 -183.99 -1.76 -10.54 16 21 C 0.09 2.48 6.78 42.26 0.29 2.76 16 22 C 0.55 17.92 7.99 86.92 0.69 18.61 16 23 N -0.82 -18.21 8.86 -175.28 -1.55 -19.76 16 24 O -0.55 -24.32 13.80 19.28 0.27 -24.06 16 25 C 0.12 3.40 5.86 86.50 0.51 3.90 16 26 C 0.05 1.85 5.17 86.54 0.45 2.30 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.01 0.68 8.07 -2.39 -0.02 0.66 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.00 0.07 7.11 -2.39 -0.02 0.05 16 31 H 0.08 3.23 8.06 -2.38 -0.02 3.21 16 32 H 0.08 2.89 7.04 -2.39 -0.02 2.88 16 33 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.17 1.77 7.90 -2.91 -0.02 1.75 16 35 H 0.20 -0.38 8.06 -2.90 -0.02 -0.41 16 36 H 0.21 0.17 8.06 -2.91 -0.02 0.14 16 37 H 0.42 6.80 8.18 -92.71 -0.76 6.04 16 38 H 0.41 8.15 8.93 -92.71 -0.83 7.32 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.10 2.23 5.59 -2.39 -0.01 2.22 16 41 H 0.00 0.22 6.61 -2.39 -0.02 0.21 16 42 H 0.09 3.13 8.11 -2.39 -0.02 3.11 16 Total: -1.00 -86.58 344.44 -1.94 -88.52 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -0.50 Total: 12.94 kcal Atomic # 6 Polarization: 27.83 SS G_CDS: 5.83 Total: 33.66 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -9.83 Total: -134.84 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: 0.54 Total: -48.34 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -86.58 -1.94 -88.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363627046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.834 kcal (2) G-P(sol) polarization free energy of solvation -86.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds