Wall clock time and date at job start Fri Apr 10 2020 14:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47257 * 300.00220 * 3 2 1 6 6 H 1.48504 * 109.46730 * 60.00244 * 3 2 1 7 7 C 1.38946 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00055 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00145 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00134 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47380 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00278 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47097 * 180.02562 * 14 13 12 16 16 C 1.30996 * 119.99790 * 127.00682 * 15 14 13 17 17 C 1.50693 * 120.00613 * 7.55524 * 16 15 14 18 18 N 1.46501 * 109.47335 * 127.15592 * 17 16 15 19 19 C 1.34773 * 119.99940 * 179.97438 * 18 17 16 20 20 O 1.21557 * 120.00282 * 0.02562 * 19 18 17 21 21 C 1.47844 * 120.00060 * 180.02562 * 19 18 17 22 22 C 1.40021 * 120.55781 * 180.28085 * 21 19 18 23 23 C 1.38360 * 118.28623 * 180.24281 * 22 21 19 24 24 C 1.38356 * 119.30201 * 359.46151 * 23 22 21 25 25 N 1.31930 * 121.07750 * 0.29648 * 24 23 22 26 26 C 1.31691 * 121.88037 * 359.97438 * 25 24 23 27 27 H 0.96990 * 120.00071 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99982 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47532 * 59.99917 * 12 10 9 30 30 H 1.09003 * 109.47472 * 299.99724 * 12 10 9 31 31 H 1.00904 * 110.99957 * 303.95620 * 13 12 10 32 32 H 1.08998 * 109.47033 * 59.99711 * 14 13 12 33 33 H 1.09001 * 109.46510 * 299.99698 * 14 13 12 34 34 H 1.07998 * 119.99632 * 307.00195 * 15 14 13 35 35 H 1.08006 * 119.99529 * 187.55608 * 16 15 14 36 36 H 1.08996 * 109.46876 * 7.15596 * 17 16 15 37 37 H 1.08998 * 109.47021 * 247.15934 * 17 16 15 38 38 H 0.96997 * 119.99963 * 0.02562 * 18 17 16 39 39 H 1.07999 * 120.86472 * 359.97438 * 22 21 19 40 40 H 1.08004 * 120.35292 * 179.73417 * 23 22 21 41 41 H 1.07999 * 119.45920 * 180.27898 * 24 23 22 42 42 H 1.07996 * 119.71718 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0007 14 6 1.4983 -7.2708 -0.0005 15 6 2.5079 -8.3897 0.0010 16 6 2.4383 -9.3335 0.9068 17 6 1.2563 -9.3973 1.8394 18 7 0.6704 -10.7392 1.7941 19 6 -0.4048 -11.0310 2.5526 20 8 -0.8886 -10.1806 3.2739 21 6 -0.9958 -12.3854 2.5074 22 6 -2.1163 -12.6995 3.2860 23 6 -2.6279 -13.9829 3.2112 24 6 -2.0287 -14.9026 2.3690 25 7 -0.9765 -14.5767 1.6429 26 6 -0.4500 -13.3703 1.6836 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 0.0005 29 1 0.6176 -4.9205 -0.8902 30 1 0.6169 -4.9209 0.8897 31 1 2.8341 -5.9124 -0.7802 32 1 0.8744 -7.3450 -0.8911 33 1 0.8725 -7.3455 0.8889 34 1 3.2887 -8.4134 -0.7448 35 1 3.2281 -10.0660 0.9851 36 1 0.5105 -8.6646 1.5313 37 1 1.5832 -9.1776 2.8557 38 1 1.0566 -11.4179 1.2188 39 1 -2.5671 -11.9604 3.9318 40 1 -3.4886 -14.2625 3.8006 41 1 -2.4287 -15.9038 2.3052 42 1 0.4115 -13.1413 1.0739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497519511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:44 Heat of formation + Delta-G solvation = -35.650892 kcal Electronic energy + Delta-G solvation = -24125.436152 eV Core-core repulsion = 20298.004239 eV Total energy + Delta-G solvation = -3827.431913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63187 -40.22188 -40.06771 -38.08199 -36.33310 -35.80119 -34.12430 -33.53402 -33.26100 -32.33813 -29.34530 -27.60026 -26.42231 -25.07864 -24.51979 -24.36116 -21.85980 -21.21317 -20.25129 -19.87816 -18.84419 -17.98507 -17.83229 -17.35307 -17.14390 -16.77346 -16.51624 -16.39742 -16.01114 -16.00466 -15.53326 -15.29686 -15.10832 -14.76482 -14.47536 -14.32137 -14.13880 -14.03024 -13.53686 -13.49044 -13.22419 -13.15979 -12.97082 -12.74478 -12.41579 -12.11459 -11.71509 -11.52653 -11.46325 -11.00121 -10.57056 -10.45475 -10.37808 -10.26226 -10.03392 -9.97642 -9.28436 -8.47929 -5.97100 -0.41009 0.18470 1.00768 1.36329 1.41647 1.56251 1.75509 2.02916 2.18626 2.29303 2.82620 3.00354 3.19168 3.30094 3.59755 3.69572 3.72176 3.79255 3.92737 4.01156 4.06264 4.23492 4.29666 4.42075 4.43426 4.46196 4.53477 4.64320 4.67457 4.76291 4.95306 4.99249 5.11441 5.24399 5.40004 5.56234 5.56894 5.78231 5.87324 6.06908 6.38329 6.40580 6.58197 6.82058 7.06923 7.10950 7.54133 8.09083 8.69744 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.001682 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.879236 B =16640.397374 C =17341.199805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.063 3.937 13 N -0.678 5.678 14 C 0.070 3.930 15 C -0.123 4.123 16 C -0.164 4.164 17 C 0.139 3.861 18 N -0.703 5.703 19 C 0.559 3.441 20 O -0.579 6.579 21 C -0.202 4.202 22 C -0.032 4.032 23 C -0.171 4.171 24 C 0.120 3.880 25 N -0.510 5.510 26 C 0.136 3.864 27 H 0.278 0.722 28 H 0.396 0.604 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.347 0.653 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.142 0.858 40 H 0.173 0.827 41 H 0.192 0.808 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 -31.685 2.109 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.311 5.311 14 C -0.058 4.058 15 C -0.142 4.142 16 C -0.183 4.183 17 C 0.016 3.984 18 N -0.355 5.355 19 C 0.346 3.654 20 O -0.459 6.459 21 C -0.207 4.207 22 C -0.059 4.059 23 C -0.190 4.190 24 C -0.036 4.036 25 N -0.218 5.218 26 C -0.022 4.022 27 H 0.087 0.913 28 H 0.230 0.770 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.255 0.745 39 H 0.160 0.840 40 H 0.191 0.809 41 H 0.209 0.791 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.880 -31.526 2.739 32.019 hybrid contribution -0.647 1.565 -0.477 1.759 sum -5.527 -29.962 2.262 30.551 Atomic orbital electron populations 1.69681 1.06888 1.29290 1.50315 1.26075 0.96562 1.02509 0.96192 0.84837 0.78025 0.76928 0.78329 1.19723 1.19476 1.19670 1.19734 0.92765 0.84016 1.49949 0.90220 1.41943 1.09350 1.04750 1.64981 1.20837 0.88257 0.86132 0.82265 1.90488 1.15783 1.87956 1.56668 1.21546 0.94077 0.88226 1.03055 1.60103 1.18941 1.00436 1.51581 1.21335 0.95507 0.87153 1.01803 1.22840 0.99177 0.94103 0.98113 1.22755 0.98164 1.01876 0.95536 1.20475 0.94425 0.83729 0.99755 1.45746 1.30284 1.14611 1.44881 1.18410 0.80143 0.87409 0.79424 1.90796 1.62848 1.50240 1.42064 1.20938 1.00881 0.94830 1.04080 1.21963 0.92148 0.97541 0.94239 1.22512 1.02721 0.92781 1.01010 1.23627 0.89639 1.01212 0.89114 1.67796 1.11995 1.19438 1.22619 1.23289 0.97830 0.87416 0.93699 0.91274 0.76984 0.91350 0.88180 0.83402 0.93203 0.89922 0.85187 0.83619 0.91043 0.91592 0.74549 0.84012 0.80930 0.79089 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -30.01 5.29 -306.99 -1.62 -31.64 16 10 C 0.44 21.26 7.82 87.65 0.69 21.94 16 11 O -0.62 -35.03 15.78 -3.08 -0.05 -35.08 16 12 C 0.06 2.23 6.17 85.55 0.53 2.75 16 13 N -0.68 -21.45 6.12 -521.99 -3.19 -24.64 16 14 C 0.07 1.60 5.77 85.56 0.49 2.09 16 15 C -0.12 -2.20 9.77 25.65 0.25 -1.95 16 16 C -0.16 -2.42 9.63 25.65 0.25 -2.18 16 17 C 0.14 2.54 5.76 85.63 0.49 3.03 16 18 N -0.70 -10.51 5.50 -469.72 -2.58 -13.09 16 19 C 0.56 11.43 7.78 86.79 0.68 12.10 16 20 O -0.58 -17.02 16.42 -3.89 -0.06 -17.09 16 21 C -0.20 -3.19 5.89 -19.99 -0.12 -3.31 16 22 C -0.03 -0.46 9.72 22.73 0.22 -0.24 16 23 C -0.17 -1.46 10.10 22.33 0.23 -1.23 16 24 C 0.12 1.07 11.17 84.71 0.95 2.02 16 25 N -0.51 -6.78 10.35 -194.76 -2.01 -8.80 16 26 C 0.14 1.66 10.71 85.02 0.91 2.57 16 27 H 0.28 14.16 8.31 -92.72 -0.77 13.39 16 28 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.35 11.19 8.42 -89.69 -0.76 10.44 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.94 5.29 -2.39 -0.01 1.93 16 34 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.07 1.53 5.30 -2.39 -0.01 1.52 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.42 3.32 6.53 -92.71 -0.61 2.71 16 39 H 0.14 2.14 7.74 -2.91 -0.02 2.11 16 40 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 42 H 0.18 1.09 6.42 -2.91 -0.02 1.08 16 Total: -1.00 -78.33 366.71 -1.38 -79.70 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -1.00 Total: 36.49 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.84 Total: 18.78 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -9.13 Total: -128.24 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.11 Total: -52.17 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -78.33 -1.38 -79.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497519511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.053 kcal (2) G-P(sol) polarization free energy of solvation -78.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds