Wall clock time and date at job start Fri Apr 10 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85053 * 23.80977 * 10 9 7 12 12 C 1.53781 * 113.61132 * 155.00038 * 10 9 7 13 13 C 1.53778 * 87.07854 * 139.98151 * 12 10 9 14 14 H 1.09000 * 113.61468 * 89.20252 * 13 12 10 15 15 N 1.46500 * 113.61693 * 220.01764 * 13 12 10 16 16 C 1.34776 * 120.00412 * 205.00269 * 15 13 12 17 17 O 1.21282 * 119.99889 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00136 * 179.97438 * 16 15 13 19 19 N 1.46497 * 109.46875 * 179.97438 * 18 16 15 20 20 C 1.34780 * 120.00089 * 180.02562 * 19 18 16 21 21 O 1.21517 * 119.99523 * 0.02562 * 20 19 18 22 22 C 1.48146 * 120.00333 * 180.02562 * 20 19 18 23 23 C 1.39820 * 120.92262 * 359.71972 * 22 20 19 24 24 C 1.38142 * 118.99900 * 179.75388 * 23 22 20 25 25 N 1.31810 * 120.89980 * 0.53468 * 24 23 22 26 26 C 1.31811 * 122.04922 * 359.73667 * 25 24 23 27 27 C 1.38153 * 120.89414 * 359.97438 * 26 25 24 28 28 C 1.53777 * 87.08544 * 334.56772 * 13 12 10 29 29 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 31 31 H 1.08997 * 113.61529 * 254.52896 * 12 10 9 32 32 H 1.08998 * 113.61491 * 25.35101 * 12 10 9 33 33 H 0.97007 * 119.99763 * 24.99869 * 15 13 12 34 34 H 1.08996 * 109.47361 * 300.00455 * 18 16 15 35 35 H 1.09003 * 109.46744 * 60.00604 * 18 16 15 36 36 H 0.97002 * 120.00397 * 0.02562 * 19 18 16 37 37 H 1.07997 * 120.49257 * 359.97438 * 23 22 20 38 38 H 1.08000 * 119.55128 * 180.27121 * 24 23 22 39 39 H 1.07995 * 119.55431 * 179.97438 * 26 25 24 40 40 H 1.07995 * 120.49773 * 180.02562 * 27 26 25 41 41 H 1.09000 * 113.61314 * 270.88866 * 28 13 12 42 42 H 1.09002 * 113.61704 * 139.97929 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0656 -3.5638 0.4060 12 6 1.2602 -4.8287 0.5960 13 6 1.8480 -5.6975 -0.5284 14 1 2.7979 -6.1646 -0.2682 15 7 0.8876 -6.6432 -1.1025 16 6 1.3253 -7.7706 -1.6973 17 8 2.5142 -8.0021 -1.7577 18 6 0.3372 -8.7437 -2.2873 19 7 1.0579 -9.8779 -2.8707 20 6 0.3748 -10.8793 -3.4598 21 8 -0.8389 -10.8411 -3.5076 22 6 1.1034 -12.0267 -4.0493 23 6 2.4998 -12.0876 -4.0103 24 6 3.1383 -13.1785 -4.5676 25 7 2.4501 -14.1467 -5.1389 26 6 1.1336 -14.1259 -5.2020 27 6 0.4142 -13.0758 -4.6649 28 6 1.9992 -4.4022 -1.3433 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0039 31 1 1.5917 -5.1211 1.5923 32 1 0.1799 -4.6995 0.5303 33 1 -0.0634 -6.4579 -1.0545 34 1 -0.3320 -9.1014 -1.5049 35 1 -0.2443 -8.2455 -3.0631 36 1 2.0267 -9.9083 -2.8329 37 1 3.0702 -11.2955 -3.5483 38 1 4.2163 -13.2368 -4.5386 39 1 0.6103 -14.9407 -5.6801 40 1 -0.6643 -13.0655 -4.7199 41 1 1.1209 -4.1569 -1.9404 42 1 2.9273 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752731812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:04 Heat of formation + Delta-G solvation = -24.288679 kcal Electronic energy + Delta-G solvation = -24638.137333 eV Core-core repulsion = 20811.198123 eV Total energy + Delta-G solvation = -3826.939211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78946 -41.12867 -40.11358 -39.28866 -35.92873 -35.66352 -34.35891 -33.74424 -32.26849 -31.86032 -29.31299 -26.55014 -26.36994 -25.53013 -24.43589 -23.66531 -21.87560 -21.69052 -20.85822 -19.74717 -19.11728 -18.04017 -17.68151 -17.45788 -17.03737 -16.68478 -16.59352 -16.42196 -16.08699 -16.00555 -15.84964 -15.08907 -14.94309 -14.80040 -14.76219 -14.45600 -14.19435 -13.93739 -13.45565 -13.29279 -13.15165 -12.79293 -12.70631 -12.28394 -12.19424 -12.06855 -11.76727 -11.59467 -11.50768 -11.04611 -11.04162 -10.84688 -10.56886 -10.40266 -10.22084 -10.03605 -8.98171 -7.95149 -5.22953 -0.40139 0.07428 1.42764 1.48517 1.50521 1.56466 1.59796 1.70810 2.30375 2.57443 2.81463 3.36519 3.37802 3.49261 3.56240 3.71093 3.80000 3.83610 3.91793 3.98152 4.04792 4.26464 4.27262 4.30575 4.32777 4.52206 4.71613 4.77069 4.79818 4.90506 4.91499 4.99219 5.04358 5.12664 5.17201 5.35401 5.50502 5.58611 5.65867 6.23009 6.27191 6.44627 6.87991 6.89278 7.07934 7.34058 8.10414 8.32989 9.27542 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.036235 B = 0.001770 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.556472 B =15816.605986 C =16104.523078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.724 5.724 10 C 0.147 3.853 11 H 0.079 0.921 12 C -0.141 4.141 13 C 0.139 3.861 14 H 0.112 0.888 15 N -0.698 5.698 16 C 0.513 3.487 17 O -0.573 6.573 18 C 0.101 3.899 19 N -0.704 5.704 20 C 0.562 3.438 21 O -0.562 6.562 22 C -0.103 4.103 23 C -0.136 4.136 24 C 0.093 3.907 25 N -0.491 5.491 26 C 0.094 3.906 27 C -0.121 4.121 28 C -0.170 4.170 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.417 0.583 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.417 0.583 37 H 0.159 0.841 38 H 0.189 0.811 39 H 0.189 0.811 40 H 0.152 0.848 41 H 0.071 0.929 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -27.974 -6.846 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.361 5.361 10 C 0.037 3.963 11 H 0.097 0.903 12 C -0.180 4.180 13 C 0.034 3.966 14 H 0.130 0.870 15 N -0.349 5.349 16 C 0.300 3.700 17 O -0.452 6.452 18 C -0.025 4.025 19 N -0.359 5.359 20 C 0.349 3.651 21 O -0.441 6.441 22 C -0.114 4.114 23 C -0.156 4.156 24 C -0.063 4.063 25 N -0.201 5.201 26 C -0.062 4.062 27 C -0.142 4.142 28 C -0.213 4.213 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.254 0.746 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.257 0.743 37 H 0.177 0.823 38 H 0.206 0.794 39 H 0.206 0.794 40 H 0.169 0.831 41 H 0.090 0.910 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.975 -28.610 -7.227 29.659 hybrid contribution -0.579 2.157 0.357 2.262 sum 2.396 -26.453 -6.870 27.436 Atomic orbital electron populations 1.69789 1.06489 1.26102 1.59414 1.25529 0.96369 1.01000 1.03748 0.85259 0.77235 0.79418 0.78129 1.20651 1.22294 1.20352 1.19668 0.91576 0.85442 1.41163 0.90583 1.42494 1.05375 1.00787 1.87470 1.21701 0.95808 0.84169 0.94654 0.90297 1.23679 1.01076 0.94901 0.98383 1.22177 0.93621 0.86729 0.94122 0.86989 1.45817 1.11386 1.20427 1.57252 1.20696 0.89314 0.82349 0.77681 1.90679 1.18279 1.76619 1.59669 1.21194 0.93747 0.86784 1.00805 1.45569 1.12023 1.20499 1.57835 1.18363 0.86687 0.82293 0.77712 1.90784 1.14492 1.79337 1.59463 1.20330 0.94753 0.95563 1.00790 1.22622 0.93264 1.00586 0.99165 1.23260 1.02044 0.88481 0.92518 1.67641 1.09788 1.27921 1.14716 1.23245 0.89496 0.97650 0.95814 1.22468 1.02788 0.93126 0.95813 1.24169 1.01310 0.96352 0.99423 0.94048 0.79213 0.89888 0.89368 0.74583 0.86276 0.86858 0.74320 0.82333 0.79435 0.79421 0.83053 0.91040 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.25 -13.27 9.97 84.03 0.84 -12.43 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -34.49 5.40 -320.43 -1.73 -36.22 16 10 C 0.15 5.29 4.48 45.52 0.20 5.49 16 11 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 12 C -0.14 -3.79 7.58 31.12 0.24 -3.55 16 13 C 0.14 3.43 4.24 45.52 0.19 3.62 16 14 H 0.11 2.86 7.46 -2.39 -0.02 2.84 16 15 N -0.70 -13.48 5.35 -440.04 -2.36 -15.83 16 16 C 0.51 10.25 7.90 87.66 0.69 10.94 16 17 O -0.57 -14.96 15.27 -3.04 -0.05 -15.01 16 18 C 0.10 1.57 6.15 85.64 0.53 2.10 16 19 N -0.70 -11.70 5.49 -469.41 -2.58 -14.28 16 20 C 0.56 10.83 7.80 86.87 0.68 11.51 16 21 O -0.56 -14.11 16.45 -3.77 -0.06 -14.17 16 22 C -0.10 -1.65 5.91 -19.88 -0.12 -1.77 16 23 C -0.14 -1.64 9.62 22.63 0.22 -1.43 16 24 C 0.09 1.11 11.17 84.67 0.95 2.05 16 25 N -0.49 -7.39 10.33 -196.02 -2.03 -9.42 16 26 C 0.09 1.18 11.17 84.68 0.95 2.13 16 27 C -0.12 -1.75 9.68 22.63 0.22 -1.53 16 28 C -0.17 -5.36 7.68 31.12 0.24 -5.12 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.38 19.07 7.93 -92.71 -0.73 18.33 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 33 H 0.42 6.09 8.73 -92.70 -0.81 5.28 16 34 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.42 6.35 5.58 -92.71 -0.52 5.83 16 37 H 0.16 1.29 6.54 -2.91 -0.02 1.27 16 38 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.15 2.03 7.74 -2.91 -0.02 2.01 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -72.57 364.22 -1.18 -73.75 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.98 Total: 32.98 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.28 Total: 8.34 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -8.40 Total: -133.10 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.11 Total: -29.18 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.57 -1.18 -73.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752731812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.462 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds