Wall clock time and date at job start Fri Apr 10 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48501 * 109.47436 * 240.00585 * 3 2 1 5 5 H 1.48499 * 109.47338 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46992 * 120.00425 * 3 2 1 7 7 C 1.38806 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00718 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00345 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47230 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47155 * 294.99484 * 11 10 9 13 13 N 1.46502 * 109.47645 * 54.99801 * 11 10 9 14 14 C 1.34771 * 120.00241 * 204.99943 * 13 11 10 15 15 O 1.21536 * 119.99957 * 0.02562 * 14 13 11 16 16 C 1.47982 * 119.99958 * 180.02562 * 14 13 11 17 17 C 1.39841 * 120.59304 * 5.59607 * 16 14 13 18 18 C 1.38468 * 118.34773 * 179.97438 * 17 16 14 19 19 C 1.38589 * 119.45819 * 0.03069 * 18 17 16 20 20 N 1.31643 * 121.18240 * 359.97438 * 19 18 17 21 21 C 1.32465 * 121.79466 * 0.02562 * 20 19 18 22 22 C 1.48311 * 119.79833 * 179.97438 * 21 20 19 23 23 N 1.34778 * 119.99662 * 76.22683 * 22 21 20 24 24 O 1.21487 * 119.99962 * 256.23230 * 22 21 20 25 25 C 1.53005 * 109.47340 * 175.00005 * 11 10 9 26 26 C 1.52991 * 117.49969 * 248.74683 * 25 11 10 27 27 C 1.52998 * 117.49906 * 180.08296 * 25 11 10 28 28 H 0.97004 * 119.99685 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99841 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47159 * 60.00079 * 10 9 7 31 31 H 1.09002 * 109.46923 * 300.00493 * 10 9 7 32 32 H 0.96994 * 119.99527 * 25.00305 * 13 11 10 33 33 H 1.07992 * 120.82455 * 0.05066 * 17 16 14 34 34 H 1.07997 * 120.26560 * 180.29673 * 18 17 16 35 35 H 1.08006 * 119.40778 * 179.97438 * 19 18 17 36 36 H 0.97000 * 120.00404 * 0.02562 * 23 22 21 37 37 H 0.97004 * 119.99492 * 180.02562 * 23 22 21 38 38 H 1.09004 * 115.54419 * 34.41539 * 25 11 10 39 39 H 1.08995 * 117.50289 * 359.97438 * 26 25 11 40 40 H 1.09001 * 117.50340 * 145.01867 * 26 25 11 41 41 H 1.09004 * 117.49670 * 214.97690 * 27 25 11 42 42 H 1.08998 * 117.50021 * 0.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 1 0.4974 -4.8138 0.9300 13 7 0.1447 -4.6758 -1.1329 14 6 -1.0797 -5.2367 -1.0821 15 8 -1.4216 -5.8614 -0.0972 16 6 -2.0079 -5.0918 -2.2255 17 6 -1.5883 -4.4771 -3.4094 18 6 -2.4950 -4.3668 -4.4501 19 6 -3.7792 -4.8627 -4.2906 20 7 -4.1532 -5.4378 -3.1670 21 6 -3.3256 -5.5689 -2.1410 22 6 -3.7939 -6.2239 -0.8955 23 7 -3.9188 -7.5649 -0.8452 24 8 -4.0650 -5.5516 0.0794 25 6 1.8247 -6.1411 -0.1269 26 6 1.6671 -6.9257 -1.4308 27 6 1.0018 -7.4308 -0.1481 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7145 0.8894 31 1 2.6848 -3.7145 -0.8905 32 1 0.4174 -4.1769 -1.9187 33 1 -0.5817 -4.0991 -3.5099 34 1 -2.2024 -3.9019 -5.3799 35 1 -4.4859 -4.7758 -5.1027 36 1 -3.7021 -8.1017 -1.6235 37 1 -4.2254 -7.9932 -0.0307 38 1 2.7969 -6.1724 0.3650 39 1 1.0211 -6.5007 -2.1990 40 1 2.5355 -7.4736 -1.7967 41 1 1.4329 -8.3107 0.3295 42 1 -0.0816 -7.3378 -0.0729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754461285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:45 Heat of formation + Delta-G solvation = 12.251044 kcal Electronic energy + Delta-G solvation = -27147.849295 eV Core-core repulsion = 23322.494566 eV Total energy + Delta-G solvation = -3825.354729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09807 -39.58994 -38.61839 -37.08953 -34.96031 -33.78866 -33.51289 -32.65733 -31.67007 -30.99696 -28.23675 -25.20321 -24.57510 -24.02639 -22.30610 -21.59356 -21.29930 -20.91246 -19.73470 -18.32851 -17.74860 -17.16205 -16.94115 -16.84049 -15.98410 -15.68518 -15.51642 -14.98117 -14.50606 -14.38286 -14.11952 -13.91371 -13.76298 -13.38105 -13.27019 -13.17643 -12.89383 -12.68013 -12.12986 -11.71256 -11.41899 -11.28239 -10.92404 -10.82704 -10.51748 -10.29138 -10.20306 -10.14587 -9.90981 -9.81714 -9.61743 -9.60001 -9.58682 -9.37289 -8.94059 -8.74451 -6.99295 -5.79181 -3.10314 0.37183 0.83686 2.68007 2.83511 3.18135 3.25263 3.41250 3.46190 3.47593 3.61995 3.99657 4.35001 4.51003 4.52415 4.56709 4.64587 4.75461 4.87176 5.11276 5.14286 5.16181 5.21416 5.50300 5.52921 5.63444 5.71218 5.75327 5.77538 5.96777 5.97565 6.16354 6.19548 6.26601 6.41913 6.45886 6.63154 6.81217 6.84267 7.30115 7.46866 7.65325 7.66909 8.28345 8.34688 8.37855 9.49441 10.04583 10.39710 11.42604 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004437 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.592866 B = 6309.172963 C = 7434.448129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.094 0.906 13 N -0.698 5.698 14 C 0.557 3.443 15 O -0.514 6.514 16 C -0.144 4.144 17 C -0.039 4.039 18 C -0.162 4.162 19 C 0.119 3.881 20 N -0.463 5.463 21 C 0.142 3.858 22 C 0.599 3.401 23 N -0.839 5.839 24 O -0.509 6.509 25 C -0.159 4.159 26 C -0.178 4.178 27 C -0.186 4.186 28 H 0.257 0.743 29 H 0.386 0.614 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.403 0.597 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.398 0.602 37 H 0.406 0.594 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -17.247 -11.330 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.112 0.888 13 N -0.349 5.349 14 C 0.342 3.658 15 O -0.391 6.391 16 C -0.150 4.150 17 C -0.065 4.065 18 C -0.181 4.181 19 C -0.039 4.039 20 N -0.173 5.173 21 C 0.000 4.000 22 C 0.381 3.619 23 N -0.403 5.403 24 O -0.382 6.382 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.223 4.223 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.239 0.761 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.226 0.774 37 H 0.238 0.762 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.069 -17.255 -9.951 20.330 hybrid contribution 1.290 1.290 -0.655 1.938 sum -2.779 -15.965 -10.605 19.367 Atomic orbital electron populations 1.69667 1.05103 1.25899 1.57011 1.24759 0.95473 0.97712 1.02685 0.86275 0.78510 0.83548 0.77839 1.21271 1.21691 1.21221 1.19147 0.90968 0.84007 1.43587 0.91165 1.42359 1.06006 0.99694 1.89647 1.20911 0.92966 0.85056 0.99060 1.20825 0.90084 0.93004 0.89693 0.88756 1.45816 1.14047 1.53985 1.21022 1.17926 0.81668 0.79909 0.86265 1.90749 1.75062 1.41144 1.32188 1.20960 0.95095 1.02792 0.96124 1.21865 1.00750 0.92608 0.91313 1.22315 0.94649 1.00679 1.00483 1.23020 0.94733 0.91789 0.94402 1.67719 1.35006 1.15024 0.99571 1.21147 0.89404 0.95969 0.93432 1.17402 0.76080 0.82697 0.85762 1.43475 1.71271 1.06736 1.18851 1.90874 1.48393 1.63780 1.35104 1.22694 1.00856 0.92396 1.01927 1.22875 1.02947 1.04105 0.91576 1.23331 1.01495 0.96828 1.00636 0.93352 0.77970 0.94664 0.95594 0.76070 0.83408 0.83406 0.81487 0.77395 0.76220 0.87092 0.89275 0.89428 0.89675 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.93 5.43 -59.92 -0.33 -18.26 16 10 C 0.15 2.82 5.80 -4.05 -0.02 2.79 16 11 C 0.17 2.79 2.59 -67.93 -0.18 2.61 16 12 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 13 N -0.70 -10.86 3.01 -54.71 -0.16 -11.03 16 14 C 0.56 9.22 6.58 -12.27 -0.08 9.14 16 15 O -0.51 -9.71 10.97 -12.88 -0.14 -9.85 16 16 C -0.14 -2.09 5.92 -104.49 -0.62 -2.71 16 17 C -0.04 -0.44 9.63 -38.90 -0.37 -0.82 16 18 C -0.16 -1.46 10.10 -39.37 -0.40 -1.85 16 19 C 0.12 1.15 11.17 -17.50 -0.20 0.95 16 20 N -0.46 -6.05 10.28 -9.50 -0.10 -6.14 16 21 C 0.14 2.14 6.55 -82.64 -0.54 1.59 16 22 C 0.60 9.76 5.47 -12.12 -0.07 9.69 16 23 N -0.84 -9.41 8.87 30.64 0.27 -9.14 16 24 O -0.51 -10.77 17.25 -12.83 -0.22 -10.99 16 25 C -0.16 -2.17 5.70 -90.62 -0.52 -2.68 16 26 C -0.18 -2.12 9.74 -26.70 -0.26 -2.38 16 27 C -0.19 -2.45 9.83 -26.69 -0.26 -2.71 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.39 10.27 7.33 -40.82 -0.30 9.97 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.40 5.82 6.75 -40.82 -0.28 5.55 16 33 H 0.15 1.42 6.56 -52.49 -0.34 1.07 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.40 3.28 8.82 -40.82 -0.36 2.92 16 37 H 0.41 3.96 8.93 -40.82 -0.36 3.60 16 38 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 39 H 0.09 1.06 6.67 -51.93 -0.35 0.71 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.12 1.77 5.01 -51.93 -0.26 1.51 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -36.29 354.91 -8.54 -44.82 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -5.15 Total: 19.08 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -3.76 Total: 6.40 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: 0.41 Total: -71.93 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.36 Total: -20.84 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.29 -8.54 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754461285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.075 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds