Wall clock time and date at job start Fri Apr 10 2020 14:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48501 * 109.47436 * 240.00585 * 3 2 1 5 5 H 1.48499 * 109.47338 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46992 * 120.00425 * 3 2 1 7 7 C 1.38806 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00718 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00345 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47230 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47155 * 294.99484 * 11 10 9 13 13 N 1.46502 * 109.47645 * 54.99801 * 11 10 9 14 14 C 1.34771 * 120.00241 * 204.99943 * 13 11 10 15 15 O 1.21536 * 119.99957 * 0.02562 * 14 13 11 16 16 C 1.47982 * 119.99958 * 180.02562 * 14 13 11 17 17 C 1.39841 * 120.59304 * 5.59607 * 16 14 13 18 18 C 1.38468 * 118.34773 * 179.97438 * 17 16 14 19 19 C 1.38589 * 119.45819 * 0.03069 * 18 17 16 20 20 N 1.31643 * 121.18240 * 359.97438 * 19 18 17 21 21 C 1.32465 * 121.79466 * 0.02562 * 20 19 18 22 22 C 1.48311 * 119.79833 * 179.97438 * 21 20 19 23 23 N 1.34778 * 119.99662 * 76.22683 * 22 21 20 24 24 O 1.21487 * 119.99962 * 256.23230 * 22 21 20 25 25 C 1.53005 * 109.47340 * 175.00005 * 11 10 9 26 26 C 1.52991 * 117.49969 * 248.74683 * 25 11 10 27 27 C 1.52998 * 117.49906 * 180.08296 * 25 11 10 28 28 H 0.97004 * 119.99685 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99841 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47159 * 60.00079 * 10 9 7 31 31 H 1.09002 * 109.46923 * 300.00493 * 10 9 7 32 32 H 0.96994 * 119.99527 * 25.00305 * 13 11 10 33 33 H 1.07992 * 120.82455 * 0.05066 * 17 16 14 34 34 H 1.07997 * 120.26560 * 180.29673 * 18 17 16 35 35 H 1.08006 * 119.40778 * 179.97438 * 19 18 17 36 36 H 0.97000 * 120.00404 * 0.02562 * 23 22 21 37 37 H 0.97004 * 119.99492 * 180.02562 * 23 22 21 38 38 H 1.09004 * 115.54419 * 34.41539 * 25 11 10 39 39 H 1.08995 * 117.50289 * 359.97438 * 26 25 11 40 40 H 1.09001 * 117.50340 * 145.01867 * 26 25 11 41 41 H 1.09004 * 117.49670 * 214.97690 * 27 25 11 42 42 H 1.08998 * 117.50021 * 0.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 1 0.4974 -4.8138 0.9300 13 7 0.1447 -4.6758 -1.1329 14 6 -1.0797 -5.2367 -1.0821 15 8 -1.4216 -5.8614 -0.0972 16 6 -2.0079 -5.0918 -2.2255 17 6 -1.5883 -4.4771 -3.4094 18 6 -2.4950 -4.3668 -4.4501 19 6 -3.7792 -4.8627 -4.2906 20 7 -4.1532 -5.4378 -3.1670 21 6 -3.3256 -5.5689 -2.1410 22 6 -3.7939 -6.2239 -0.8955 23 7 -3.9188 -7.5649 -0.8452 24 8 -4.0650 -5.5516 0.0794 25 6 1.8247 -6.1411 -0.1269 26 6 1.6671 -6.9257 -1.4308 27 6 1.0018 -7.4308 -0.1481 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7145 0.8894 31 1 2.6848 -3.7145 -0.8905 32 1 0.4174 -4.1769 -1.9187 33 1 -0.5817 -4.0991 -3.5099 34 1 -2.2024 -3.9019 -5.3799 35 1 -4.4859 -4.7758 -5.1027 36 1 -3.7021 -8.1017 -1.6235 37 1 -4.2254 -7.9932 -0.0307 38 1 2.7969 -6.1724 0.3650 39 1 1.0211 -6.5007 -2.1990 40 1 2.5355 -7.4736 -1.7967 41 1 1.4329 -8.3107 0.3295 42 1 -0.0816 -7.3378 -0.0729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754461285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:44 Heat of formation + Delta-G solvation = -16.112770 kcal Electronic energy + Delta-G solvation = -27149.079242 eV Core-core repulsion = 23322.494566 eV Total energy + Delta-G solvation = -3826.584677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17061 -40.76718 -39.77817 -38.32962 -36.56462 -35.12094 -34.72724 -33.87453 -32.88833 -32.45240 -29.83338 -26.42174 -25.78582 -25.46596 -23.49843 -23.02098 -22.44292 -21.99582 -20.96638 -19.51500 -19.19721 -18.62091 -18.03988 -17.90944 -17.25895 -16.91563 -16.61318 -16.46894 -15.90050 -15.46579 -15.31160 -15.19132 -15.12080 -15.01161 -14.71157 -14.34456 -14.16263 -13.63062 -13.59741 -13.13513 -12.86485 -12.72106 -12.68624 -12.32775 -12.13751 -11.84301 -11.69032 -11.33402 -11.13338 -11.06069 -10.97377 -10.81237 -10.73679 -10.63925 -10.32931 -10.01911 -9.02754 -7.93903 -5.24753 -0.59130 -0.04391 1.48121 1.49585 1.51279 1.57401 1.70920 2.00778 2.22592 2.55800 2.62730 2.94304 3.38952 3.41953 3.55786 3.62484 3.67666 3.76324 3.88857 3.96686 4.08923 4.17308 4.31497 4.38086 4.44064 4.47970 4.61366 4.79337 4.82527 4.86784 4.96345 5.05190 5.12120 5.25277 5.38549 5.41620 5.48927 5.51986 5.81322 6.25203 6.29236 6.41069 6.59912 7.08557 7.23699 7.32707 8.05616 8.29164 9.28727 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004437 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.592866 B = 6309.172963 C = 7434.448129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.744 5.744 10 C 0.151 3.849 11 C 0.179 3.821 12 H 0.056 0.944 13 N -0.692 5.692 14 C 0.551 3.449 15 O -0.545 6.545 16 C -0.167 4.167 17 C -0.044 4.044 18 C -0.142 4.142 19 C 0.122 3.878 20 N -0.479 5.479 21 C 0.120 3.880 22 C 0.593 3.407 23 N -0.816 5.816 24 O -0.574 6.574 25 C -0.167 4.167 26 C -0.156 4.156 27 C -0.190 4.190 28 H 0.249 0.751 29 H 0.372 0.628 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.409 0.591 33 H 0.164 0.836 34 H 0.192 0.808 35 H 0.211 0.789 36 H 0.415 0.585 37 H 0.413 0.587 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -17.787 -14.349 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.024 3.976 11 C 0.074 3.926 12 H 0.074 0.926 13 N -0.343 5.343 14 C 0.338 3.662 15 O -0.425 6.425 16 C -0.173 4.173 17 C -0.070 4.070 18 C -0.161 4.161 19 C -0.036 4.036 20 N -0.190 5.190 21 C -0.021 4.021 22 C 0.375 3.625 23 N -0.380 5.380 24 O -0.452 6.452 25 C -0.187 4.187 26 C -0.193 4.193 27 C -0.227 4.227 28 H 0.058 0.942 29 H 0.204 0.796 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.246 0.754 33 H 0.181 0.819 34 H 0.210 0.790 35 H 0.228 0.772 36 H 0.245 0.755 37 H 0.245 0.755 38 H 0.144 0.856 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.386 -17.880 -13.012 22.242 hybrid contribution 0.773 1.369 0.203 1.585 sum -1.612 -16.511 -12.809 20.959 Atomic orbital electron populations 1.69851 1.06811 1.26046 1.59368 1.25568 0.96197 1.01161 1.03591 0.85211 0.77097 0.79098 0.78309 1.19693 1.22703 1.20748 1.19602 0.91620 0.84983 1.41358 0.90057 1.42548 1.05542 1.01027 1.89591 1.21047 0.93244 0.83608 0.99704 1.20534 0.89471 0.93925 0.88680 0.92558 1.45705 1.13855 1.53969 1.20767 1.18325 0.81896 0.79328 0.86627 1.90729 1.75573 1.42571 1.33622 1.20869 0.94737 1.04950 0.96707 1.22155 1.02090 0.92027 0.90735 1.22813 0.93559 0.98668 1.01076 1.23841 0.95974 0.89761 0.93995 1.67747 1.34871 1.16126 1.00213 1.20969 0.90033 0.97410 0.93705 1.17826 0.75211 0.83680 0.85734 1.43301 1.69351 1.05515 1.19784 1.90822 1.51595 1.65369 1.37420 1.22596 1.01091 0.90822 1.04182 1.22960 1.03206 1.02527 0.90595 1.23266 1.00179 0.97072 1.02193 0.94200 0.79640 0.94470 0.93530 0.75369 0.81890 0.79036 0.77242 0.75477 0.75454 0.85572 0.89299 0.86900 0.87961 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -36.77 5.43 -343.47 -1.87 -38.63 16 10 C 0.15 5.66 5.80 86.38 0.50 6.16 16 11 C 0.18 6.02 2.59 44.99 0.12 6.14 16 12 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 13 N -0.69 -21.86 3.01 -445.29 -1.34 -23.20 16 14 C 0.55 18.99 6.58 86.83 0.57 19.56 16 15 O -0.55 -21.97 10.97 13.58 0.15 -21.82 16 16 C -0.17 -4.89 5.92 -19.78 -0.12 -5.01 16 17 C -0.04 -0.92 9.63 22.71 0.22 -0.70 16 18 C -0.14 -2.04 10.10 22.41 0.23 -1.81 16 19 C 0.12 1.98 11.17 84.80 0.95 2.92 16 20 N -0.48 -12.00 10.28 -183.98 -1.89 -13.90 16 21 C 0.12 3.65 6.55 42.26 0.28 3.93 16 22 C 0.59 20.37 5.47 86.92 0.48 20.85 16 23 N -0.82 -19.03 8.87 -175.29 -1.56 -20.59 16 24 O -0.57 -26.13 17.25 13.74 0.24 -25.89 16 25 C -0.17 -4.38 5.70 -10.80 -0.06 -4.44 16 26 C -0.16 -3.37 9.74 30.62 0.30 -3.07 16 27 C -0.19 -4.86 9.83 30.62 0.30 -4.56 16 28 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.37 20.40 7.33 -92.71 -0.68 19.72 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 11.67 6.75 -92.71 -0.63 11.05 16 33 H 0.16 2.79 6.56 -2.91 -0.02 2.77 16 34 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.41 6.85 8.82 -92.71 -0.82 6.03 16 37 H 0.41 8.49 8.93 -92.71 -0.83 7.66 16 38 H 0.13 2.92 8.11 -2.38 -0.02 2.90 16 39 H 0.09 1.94 6.67 -2.39 -0.02 1.93 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.09 2.87 5.01 -2.39 -0.01 2.85 16 Total: -1.00 -83.19 354.91 -0.73 -83.92 By element: Atomic # 1 Polarization: 50.13 SS G_CDS: -1.83 Total: 48.29 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 5.06 Total: 23.92 kcal Atomic # 7 Polarization: -149.58 SS G_CDS: -6.37 Total: -155.95 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: 0.39 Total: -47.72 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -83.19 -0.73 -83.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754461285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.805 kcal (2) G-P(sol) polarization free energy of solvation -83.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds