Wall clock time and date at job start Fri Apr 10 2020 14:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46490 * 120.00322 * 2 1 4 4 C 1.34780 * 119.99566 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 2 1 7 7 N 1.46901 * 109.46921 * 179.97438 * 6 4 2 8 8 C 1.46893 * 111.00243 * 293.95400 * 7 6 4 9 9 C 1.38114 * 110.99734 * 169.99812 * 7 6 4 10 10 N 1.32860 * 120.81323 * 359.72405 * 9 7 6 11 11 C 1.32126 * 121.19277 * 179.69826 * 10 9 7 12 12 N 1.31507 * 122.64528 * 0.63103 * 11 10 9 13 13 C 1.33204 * 120.68324 * 359.67193 * 12 11 10 14 14 C 1.40818 * 120.81077 * 179.97438 * 9 7 6 15 15 C 1.41164 * 134.70255 * 0.03085 * 14 9 7 16 16 N 1.30253 * 108.47100 * 179.97438 * 15 14 9 17 17 N 1.36305 * 134.61536 * 179.97438 * 13 12 11 18 18 C 1.46503 * 125.87113 * 0.02562 * 17 13 12 19 19 C 1.50702 * 109.47435 * 89.99675 * 18 17 13 20 20 H 1.08007 * 119.99717 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00156 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00191 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47215 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47444 * 120.00221 * 23 21 19 26 26 H 1.48501 * 109.46875 * 239.99677 * 23 21 19 27 27 H 1.08997 * 109.47274 * 269.99955 * 1 2 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 1 2 3 29 29 H 1.09000 * 109.47828 * 149.99700 * 1 2 3 30 30 H 1.09000 * 109.47691 * 240.00107 * 3 2 1 31 31 H 1.08998 * 109.47146 * 0.02562 * 3 2 1 32 32 H 1.09008 * 109.47121 * 120.00203 * 3 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 6 4 2 34 34 H 1.09001 * 109.47380 * 59.99809 * 6 4 2 35 35 H 1.08999 * 109.47439 * 60.00146 * 8 7 6 36 36 H 1.08997 * 109.47257 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.46808 * 299.99830 * 8 7 6 38 38 H 1.08000 * 118.67510 * 180.28221 * 11 10 9 39 39 H 1.08004 * 125.76451 * 359.94363 * 15 14 9 40 40 H 1.08999 * 109.46945 * 209.99472 * 18 17 13 41 41 H 1.08994 * 109.47315 * 329.99541 * 18 17 13 42 42 H 0.96992 * 120.00571 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0001 7 7 4.1354 -2.5524 -0.0001 8 6 3.7854 -3.2346 1.2529 9 6 5.4976 -2.5957 -0.2235 10 7 6.1926 -1.4788 -0.4097 11 6 7.4969 -1.5112 -0.6182 12 7 8.1800 -2.6340 -0.6665 13 6 7.5722 -3.8071 -0.4972 14 6 6.1830 -3.8252 -0.2647 15 6 5.8052 -5.1779 -0.1227 16 7 6.8679 -5.9193 -0.2555 17 7 7.9840 -5.1065 -0.4905 18 6 9.3583 -5.5725 -0.6920 19 6 10.0621 -5.6514 0.6382 20 1 9.5380 -5.3817 1.5433 21 6 11.3747 -6.0687 0.7000 22 7 12.0124 -6.3985 -0.4019 23 14 12.2469 -6.1671 2.3489 24 1 11.3165 -5.7458 3.4270 25 1 12.6881 -7.5639 2.5930 26 1 13.4297 -5.2693 2.3376 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3635 -0.8899 -0.5139 30 1 2.8242 1.3264 -0.8900 31 1 1.4892 2.0971 0.0005 32 1 2.8242 1.3263 0.8900 33 1 4.0095 -0.6530 -0.8895 34 1 4.0089 -0.6541 0.8905 35 1 2.7017 -3.2470 1.3694 36 1 4.1600 -4.2578 1.2264 37 1 4.2352 -2.7050 2.0928 38 1 8.0224 -0.5784 -0.7601 39 1 4.8041 -5.5374 0.0649 40 1 9.3431 -6.5596 -1.1541 41 1 9.8868 -4.8752 -1.3419 42 1 12.9359 -6.6918 -0.3586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:09 Heat of formation + Delta-G solvation = 111.357194 kcal Electronic energy + Delta-G solvation = -26372.601948 eV Core-core repulsion = 22583.837534 eV Total energy + Delta-G solvation = -3788.764413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67213 -40.28508 -38.70868 -37.15470 -35.76195 -33.81330 -32.48166 -31.50044 -30.37040 -29.27891 -27.98745 -27.17482 -26.48816 -25.24225 -23.69575 -23.05321 -22.13648 -20.08194 -19.57990 -17.76059 -17.64110 -17.00032 -16.71602 -16.50116 -16.20197 -15.88843 -15.45698 -14.78161 -14.66608 -14.35711 -14.24277 -13.84554 -13.59965 -13.35598 -13.21168 -13.11141 -12.98243 -12.92422 -12.36438 -12.22708 -11.94766 -11.86933 -11.64687 -11.21577 -11.08350 -10.94242 -10.82010 -10.32202 -10.21089 -10.02848 -9.79115 -9.28880 -9.03675 -8.86684 -8.63005 -8.36567 -7.89133 -6.24698 -4.31437 1.00795 1.71892 2.35612 2.52941 2.90061 2.97628 3.21529 3.28660 3.34827 3.42516 4.13630 4.25684 4.30749 4.37415 4.63790 4.68052 4.81312 4.91239 4.93441 5.01154 5.05467 5.11037 5.19646 5.23877 5.30247 5.33424 5.41803 5.45980 5.50848 5.61859 5.86159 6.07727 6.22204 6.33243 6.59028 6.92760 6.99590 7.03361 7.07155 7.25282 7.60945 7.77104 7.87355 7.89542 8.12848 8.58961 8.72525 9.33807 10.83638 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.002819 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.357246 B = 9930.980335 C =10223.476433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.625 5.625 3 C 0.077 3.923 4 C 0.513 3.487 5 O -0.522 6.522 6 C 0.049 3.951 7 N -0.455 5.455 8 C 0.020 3.980 9 C 0.432 3.568 10 N -0.604 5.604 11 C 0.350 3.650 12 N -0.533 5.533 13 C 0.353 3.647 14 C -0.295 4.295 15 C 0.072 3.928 16 N -0.235 5.235 17 N -0.331 5.331 18 C 0.262 3.738 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.198 0.802 39 H 0.191 0.809 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.153 16.093 1.264 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.361 5.361 3 C -0.066 4.066 4 C 0.301 3.699 5 O -0.397 6.397 6 C -0.081 4.081 7 N -0.171 5.171 8 C -0.126 4.126 9 C 0.182 3.818 10 N -0.330 5.330 11 C 0.056 3.944 12 N -0.255 5.255 13 C 0.104 3.896 14 C -0.311 4.311 15 C -0.123 4.123 16 N -0.050 5.050 17 N -0.117 5.117 18 C 0.146 3.854 19 C -0.572 4.572 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.735 3.265 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.214 0.786 39 H 0.207 0.793 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.359 14.617 0.645 24.266 hybrid contribution 0.279 0.535 1.382 1.508 sum -19.080 15.152 2.027 24.449 Atomic orbital electron populations 1.21658 0.78992 1.03199 1.01796 1.47734 1.07152 1.06445 1.74766 1.21860 0.97359 0.84989 1.02406 1.20623 0.90045 0.83288 0.75975 1.90682 1.70068 1.30617 1.48374 1.21918 0.91064 0.89517 1.05584 1.58191 1.07907 1.15885 1.35158 1.22822 1.04099 0.99739 0.85933 1.19404 0.87461 0.87719 0.87171 1.68294 1.10225 1.28772 1.25680 1.24492 0.85678 0.95217 0.89010 1.67523 1.40434 0.96230 1.21281 1.19015 0.88709 0.87939 0.93961 1.19621 0.95768 0.94936 1.20798 1.23629 0.98473 0.89334 1.00884 1.77001 0.92538 1.19089 1.16395 1.49537 1.09091 0.99487 1.53618 1.19839 0.69632 0.97203 0.98757 1.21271 0.97084 1.46542 0.92342 0.91989 1.24902 0.96815 0.94517 0.97461 1.69922 1.11805 1.44025 1.27065 0.86279 0.79386 0.77876 0.82981 1.19703 1.20599 1.20578 0.92806 0.91247 0.90441 0.91536 0.90337 0.91743 0.86118 0.89999 0.88086 0.89530 0.94352 0.78600 0.79271 0.92627 0.92208 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.41 59.85 0.62 1.17 16 2 N -0.63 -4.88 3.27 -189.52 -0.62 -5.50 16 3 C 0.08 0.35 9.74 59.84 0.58 0.93 16 4 C 0.51 5.58 7.40 -10.98 -0.08 5.50 16 5 O -0.52 -7.36 13.89 5.56 0.08 -7.29 16 6 C 0.05 0.52 3.55 -4.97 -0.02 0.51 16 7 N -0.46 -6.15 4.52 -182.03 -0.82 -6.98 16 8 C 0.02 0.24 8.96 60.06 0.54 0.77 16 9 C 0.43 6.90 6.42 -154.84 -0.99 5.91 16 10 N -0.60 -9.14 8.76 -13.62 -0.12 -9.26 16 11 C 0.35 5.59 12.24 -92.11 -1.13 4.47 16 12 N -0.53 -10.97 10.47 -13.97 -0.15 -11.11 16 13 C 0.35 7.74 8.04 -156.23 -1.26 6.48 16 14 C -0.29 -5.51 5.74 -106.82 -0.61 -6.12 16 15 C 0.07 1.28 10.73 -17.11 -0.18 1.10 16 16 N -0.23 -5.09 12.45 30.80 0.38 -4.71 16 17 N -0.33 -7.92 3.63 -61.64 -0.22 -8.15 16 18 C 0.26 6.97 6.19 -5.19 -0.03 6.94 16 19 C -0.53 -15.13 9.39 -34.44 -0.32 -15.46 16 20 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 23 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 29 H 0.08 0.62 7.42 -51.93 -0.39 0.23 16 30 H 0.07 0.28 7.85 -51.93 -0.41 -0.13 16 31 H 0.08 0.20 7.79 -51.93 -0.40 -0.20 16 32 H 0.06 0.26 7.85 -51.92 -0.41 -0.15 16 33 H 0.12 1.25 7.26 -51.93 -0.38 0.88 16 34 H 0.08 0.77 7.85 -51.93 -0.41 0.37 16 35 H 0.10 1.20 5.88 -51.93 -0.31 0.90 16 36 H 0.09 1.04 5.04 -51.93 -0.26 0.78 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.20 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.19 2.59 6.85 -52.48 -0.36 2.23 16 40 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -34.46 353.86 -8.79 -43.25 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.39 Total: -1.19 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -2.98 Total: 13.95 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.81 Total: -70.60 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.08 Total: -7.29 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.46 -8.79 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.609 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds