Wall clock time and date at job start Fri Apr 10 2020 14:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46490 * 120.00322 * 2 1 4 4 C 1.34780 * 119.99566 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 2 1 7 7 N 1.46901 * 109.46921 * 179.97438 * 6 4 2 8 8 C 1.46893 * 111.00243 * 293.95400 * 7 6 4 9 9 C 1.38114 * 110.99734 * 169.99812 * 7 6 4 10 10 N 1.32860 * 120.81323 * 359.72405 * 9 7 6 11 11 C 1.32126 * 121.19277 * 179.69826 * 10 9 7 12 12 N 1.31507 * 122.64528 * 0.63103 * 11 10 9 13 13 C 1.33204 * 120.68324 * 359.67193 * 12 11 10 14 14 C 1.40818 * 120.81077 * 179.97438 * 9 7 6 15 15 C 1.41164 * 134.70255 * 0.03085 * 14 9 7 16 16 N 1.30253 * 108.47100 * 179.97438 * 15 14 9 17 17 N 1.36305 * 134.61536 * 179.97438 * 13 12 11 18 18 C 1.46503 * 125.87113 * 0.02562 * 17 13 12 19 19 C 1.50702 * 109.47435 * 89.99675 * 18 17 13 20 20 H 1.08007 * 119.99717 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00156 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00191 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47215 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47444 * 120.00221 * 23 21 19 26 26 H 1.48501 * 109.46875 * 239.99677 * 23 21 19 27 27 H 1.08997 * 109.47274 * 269.99955 * 1 2 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 1 2 3 29 29 H 1.09000 * 109.47828 * 149.99700 * 1 2 3 30 30 H 1.09000 * 109.47691 * 240.00107 * 3 2 1 31 31 H 1.08998 * 109.47146 * 0.02562 * 3 2 1 32 32 H 1.09008 * 109.47121 * 120.00203 * 3 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 6 4 2 34 34 H 1.09001 * 109.47380 * 59.99809 * 6 4 2 35 35 H 1.08999 * 109.47439 * 60.00146 * 8 7 6 36 36 H 1.08997 * 109.47257 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.46808 * 299.99830 * 8 7 6 38 38 H 1.08000 * 118.67510 * 180.28221 * 11 10 9 39 39 H 1.08004 * 125.76451 * 359.94363 * 15 14 9 40 40 H 1.08999 * 109.46945 * 209.99472 * 18 17 13 41 41 H 1.08994 * 109.47315 * 329.99541 * 18 17 13 42 42 H 0.96992 * 120.00571 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0001 7 7 4.1354 -2.5524 -0.0001 8 6 3.7854 -3.2346 1.2529 9 6 5.4976 -2.5957 -0.2235 10 7 6.1926 -1.4788 -0.4097 11 6 7.4969 -1.5112 -0.6182 12 7 8.1800 -2.6340 -0.6665 13 6 7.5722 -3.8071 -0.4972 14 6 6.1830 -3.8252 -0.2647 15 6 5.8052 -5.1779 -0.1227 16 7 6.8679 -5.9193 -0.2555 17 7 7.9840 -5.1065 -0.4905 18 6 9.3583 -5.5725 -0.6920 19 6 10.0621 -5.6514 0.6382 20 1 9.5380 -5.3817 1.5433 21 6 11.3747 -6.0687 0.7000 22 7 12.0124 -6.3985 -0.4019 23 14 12.2469 -6.1671 2.3489 24 1 11.3165 -5.7458 3.4270 25 1 12.6881 -7.5639 2.5930 26 1 13.4297 -5.2693 2.3376 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3635 -0.8899 -0.5139 30 1 2.8242 1.3264 -0.8900 31 1 1.4892 2.0971 0.0005 32 1 2.8242 1.3263 0.8900 33 1 4.0095 -0.6530 -0.8895 34 1 4.0089 -0.6541 0.8905 35 1 2.7017 -3.2470 1.3694 36 1 4.1600 -4.2578 1.2264 37 1 4.2352 -2.7050 2.0928 38 1 8.0224 -0.5784 -0.7601 39 1 4.8041 -5.5374 0.0649 40 1 9.3431 -6.5596 -1.1541 41 1 9.8868 -4.8752 -1.3419 42 1 12.9359 -6.6918 -0.3586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065519837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:08 Heat of formation + Delta-G solvation = 88.131273 kcal Electronic energy + Delta-G solvation = -26373.609099 eV Core-core repulsion = 22583.837534 eV Total energy + Delta-G solvation = -3789.771565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.09248 -41.19485 -40.01181 -38.29698 -36.48888 -35.78435 -34.01899 -33.16464 -31.60725 -30.28755 -29.18600 -28.43301 -27.42220 -26.19277 -25.42025 -24.54757 -23.47773 -21.57294 -20.37111 -19.16812 -18.80562 -18.77247 -18.18460 -17.43019 -17.08068 -16.96908 -16.74517 -16.47506 -15.91611 -15.53086 -15.43498 -15.16450 -14.84683 -14.67220 -14.33502 -14.07323 -13.92432 -13.71190 -13.47062 -13.42034 -13.06953 -12.94023 -12.78489 -12.76355 -12.69239 -12.51095 -12.38678 -12.32086 -11.78434 -11.67935 -10.96331 -10.77143 -10.53582 -10.26105 -9.86195 -9.64554 -9.37342 -8.37086 -6.53979 -0.33023 0.27630 1.27923 1.35092 1.35828 1.48556 1.50323 1.55842 1.79265 2.30760 2.41529 2.81885 2.92762 3.09825 3.27440 3.50668 3.59818 3.62864 3.96086 4.10507 4.19776 4.34169 4.38664 4.40442 4.45544 4.51851 4.56961 4.79251 4.81936 4.83660 4.92571 4.97598 5.01706 5.04936 5.26391 5.40024 5.46335 5.54658 5.75223 5.78386 5.80903 6.13498 6.32217 6.50787 6.58481 7.13126 7.15260 7.23747 8.71197 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.002819 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.357246 B = 9930.980335 C =10223.476433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.620 5.620 3 C 0.069 3.931 4 C 0.510 3.490 5 O -0.563 6.563 6 C 0.051 3.949 7 N -0.460 5.460 8 C 0.023 3.977 9 C 0.446 3.554 10 N -0.589 5.589 11 C 0.363 3.637 12 N -0.580 5.580 13 C 0.331 3.669 14 C -0.308 4.308 15 C 0.099 3.901 16 N -0.277 5.277 17 N -0.363 5.363 18 C 0.283 3.717 19 C -0.551 4.551 20 H 0.047 0.953 21 C 0.020 3.980 22 N -0.919 5.919 23 Si 0.977 3.023 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.268 1.268 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.241 0.759 39 H 0.231 0.769 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.665 18.730 2.561 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C -0.073 4.073 4 C 0.298 3.702 5 O -0.442 6.442 6 C -0.078 4.078 7 N -0.176 5.176 8 C -0.122 4.122 9 C 0.196 3.804 10 N -0.314 5.314 11 C 0.071 3.929 12 N -0.304 5.304 13 C 0.084 3.916 14 C -0.325 4.325 15 C -0.096 4.096 16 N -0.092 5.092 17 N -0.150 5.150 18 C 0.165 3.835 19 C -0.590 4.590 20 H 0.065 0.935 21 C -0.181 4.181 22 N -0.557 5.557 23 Si 0.800 3.200 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.193 1.193 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.257 0.743 39 H 0.247 0.753 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.926 17.322 1.939 27.234 hybrid contribution 0.515 -0.063 0.931 1.066 sum -20.411 17.259 2.870 26.883 Atomic orbital electron populations 1.21786 0.78138 1.03627 1.02389 1.47859 1.07904 1.06679 1.72941 1.22130 0.98053 0.84014 1.03103 1.20638 0.90001 0.83685 0.75920 1.90669 1.70661 1.32186 1.50711 1.22016 0.91222 0.87815 1.06704 1.58127 1.05975 1.17861 1.35605 1.22836 1.04374 0.99644 0.85380 1.19568 0.88378 0.86892 0.85600 1.68470 1.09710 1.27819 1.25418 1.25423 0.86085 0.95358 0.86026 1.67563 1.42025 0.96836 1.23945 1.19378 0.90296 0.87679 0.94256 1.19756 0.94689 0.96177 1.21830 1.24292 0.98981 0.88912 0.97415 1.76948 0.92918 1.19967 1.19385 1.49179 1.08630 1.00805 1.56387 1.19194 0.71618 0.95232 0.97490 1.21395 0.97840 1.47302 0.92419 0.93487 1.25802 0.97307 0.93675 1.01340 1.70015 1.12370 1.44198 1.29155 0.85233 0.78156 0.78504 0.78092 1.19789 1.19379 1.19327 0.92133 0.88318 0.92514 0.90965 0.87930 0.90857 0.85555 0.88127 0.87695 0.89716 0.93333 0.74348 0.75288 0.94979 0.94620 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.41 127.77 1.33 2.18 16 2 N -0.62 -7.95 3.27 -871.91 -2.85 -10.81 16 3 C 0.07 0.36 9.74 127.77 1.24 1.61 16 4 C 0.51 9.98 7.40 87.66 0.65 10.62 16 5 O -0.56 -15.20 13.89 -3.03 -0.04 -15.24 16 6 C 0.05 0.95 3.55 85.56 0.30 1.26 16 7 N -0.46 -11.40 4.52 -729.83 -3.30 -14.70 16 8 C 0.02 0.50 8.96 127.69 1.14 1.64 16 9 C 0.45 13.42 6.42 133.64 0.86 14.28 16 10 N -0.59 -16.33 8.76 -197.00 -1.73 -18.06 16 11 C 0.36 10.96 12.24 180.87 2.21 13.17 16 12 N -0.58 -24.04 10.47 -198.10 -2.07 -26.12 16 13 C 0.33 14.90 8.04 134.15 1.08 15.98 16 14 C -0.31 -11.38 5.74 -21.29 -0.12 -11.50 16 15 C 0.10 3.51 10.73 85.65 0.92 4.43 16 16 N -0.28 -12.46 12.45 -56.46 -0.70 -13.16 16 17 N -0.36 -18.26 3.63 -348.94 -1.27 -19.53 16 18 C 0.28 16.03 6.19 85.63 0.53 16.56 16 19 C -0.55 -32.57 9.39 25.60 0.24 -32.33 16 20 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 21 C 0.02 1.12 5.46 84.65 0.46 1.58 16 22 N -0.92 -54.25 13.29 21.45 0.28 -53.96 16 23 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.10 0.43 7.92 -2.39 -0.02 0.42 16 29 H 0.06 0.85 7.42 -2.39 -0.02 0.83 16 30 H 0.07 0.34 7.85 -2.39 -0.02 0.32 16 31 H 0.10 0.08 7.79 -2.39 -0.02 0.07 16 32 H 0.07 0.30 7.85 -2.38 -0.02 0.28 16 33 H 0.13 2.21 7.26 -2.39 -0.02 2.20 16 34 H 0.10 1.53 7.85 -2.39 -0.02 1.51 16 35 H 0.10 2.30 5.88 -2.39 -0.01 2.29 16 36 H 0.08 1.87 5.04 -2.39 -0.01 1.86 16 37 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.24 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.23 5.87 6.85 -2.91 -0.02 5.85 16 40 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -78.50 353.86 2.25 -76.25 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.05 Total: 9.19 kcal Atomic # 6 Polarization: 28.62 SS G_CDS: 10.85 Total: 39.47 kcal Atomic # 7 Polarization: -144.70 SS G_CDS: -11.64 Total: -156.33 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.04 Total: -15.24 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.50 2.25 -76.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.382 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds