Wall clock time and date at job start Fri Apr 10 2020 14:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.50226 * 1 3 3 C 1.49825 * 105.45184 * 2 1 4 4 C 1.52127 * 110.85114 * 306.50534 * 3 2 1 5 5 C 1.53003 * 110.38812 * 109.05671 * 4 3 2 6 6 S 1.81278 * 109.77820 * 242.51504 * 5 4 3 7 7 C 1.81567 * 103.19710 * 132.27136 * 6 5 4 8 8 C 1.53013 * 109.62978 * 227.34945 * 7 6 5 9 9 S 1.81402 * 109.64193 * 138.93770 * 8 7 6 10 10 C 1.81196 * 103.14734 * 231.09710 * 9 8 7 11 11 C 1.53111 * 109.37529 * 127.62979 * 10 9 8 12 12 C 1.53019 * 109.91757 * 208.01480 * 11 10 9 13 13 N 1.47439 * 109.28098 * 145.41630 * 12 11 10 14 14 C 1.37200 * 121.06678 * 61.97221 * 13 12 11 15 15 H 1.07996 * 120.00078 * 203.63972 * 14 13 12 16 16 C 1.38816 * 120.00170 * 23.63458 * 14 13 12 17 17 N 1.31629 * 119.99674 * 21.48834 * 16 14 13 18 18 Si 1.86799 * 120.00191 * 201.48871 * 16 14 13 19 19 H 1.48500 * 109.46937 * 90.00138 * 18 16 14 20 20 H 1.48500 * 109.46874 * 209.99791 * 18 16 14 21 21 H 1.48498 * 109.47076 * 330.00058 * 18 16 14 22 22 C 1.47566 * 117.93392 * 241.75299 * 13 12 11 23 23 C 1.50450 * 104.02134 * 109.23158 * 2 1 3 24 24 H 1.08997 * 109.47279 * 56.04377 * 1 2 3 25 25 H 1.09002 * 109.46902 * 176.04761 * 1 2 3 26 26 H 1.09001 * 109.47010 * 296.04504 * 1 2 3 27 27 H 1.09102 * 107.10146 * 186.57021 * 3 2 1 28 28 H 1.08608 * 108.12427 * 68.30274 * 3 2 1 29 29 H 1.08480 * 112.01652 * 345.57083 * 4 3 2 30 30 H 1.10075 * 108.62742 * 227.34687 * 4 3 2 31 31 H 1.09157 * 109.24649 * 122.57590 * 5 4 3 32 32 H 1.08975 * 109.73967 * 3.09070 * 5 4 3 33 33 H 1.08898 * 109.58073 * 347.69339 * 7 6 5 34 34 H 1.09080 * 109.36323 * 107.57352 * 7 6 5 35 35 H 1.08880 * 109.72906 * 18.66941 * 8 7 6 36 36 H 1.09078 * 109.29956 * 258.91338 * 8 7 6 37 37 H 1.08927 * 109.49418 * 7.40199 * 10 9 8 38 38 H 1.09127 * 109.49598 * 247.53242 * 10 9 8 39 39 H 1.09174 * 109.14664 * 88.12343 * 11 10 9 40 40 H 1.08946 * 109.41741 * 328.61726 * 11 10 9 41 41 H 1.08749 * 110.04150 * 24.36833 * 12 11 10 42 42 H 1.09254 * 109.16872 * 264.76365 * 12 11 10 43 43 H 0.97002 * 119.99594 * 180.02562 * 17 16 14 44 44 H 1.08591 * 110.35238 * 341.28318 * 22 13 12 45 45 H 1.09667 * 108.63899 * 222.52663 * 22 13 12 46 46 H 1.08594 * 107.36757 * 190.46100 * 23 2 1 47 47 H 1.08188 * 107.99360 * 310.13421 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.5023 0.0000 0.0000 3 6 1.9014 1.4441 0.0000 4 6 1.2305 2.1913 -1.1427 5 6 0.1574 3.1388 -0.6027 6 16 -1.4689 2.6482 -1.2357 7 6 -2.5112 2.6536 0.2510 8 6 -3.3345 1.3650 0.3063 9 16 -3.3788 0.7424 2.0096 10 6 -2.8774 -0.9894 1.8285 11 6 -1.7215 -1.2866 2.7876 12 6 -0.8499 -2.4096 2.2214 13 7 0.5575 -2.1643 2.5856 14 6 0.9530 -2.1277 3.8988 15 1 1.8479 -1.5918 4.1786 16 6 0.2029 -2.7796 4.8680 17 7 -0.6111 -3.7553 4.5243 18 14 0.3485 -2.2722 6.6599 19 1 -0.6478 -1.2118 6.9565 20 1 0.0933 -3.4484 7.5297 21 1 1.7157 -1.7531 6.9178 22 6 1.5294 -1.9639 1.4934 23 6 1.8668 -0.4808 1.3782 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 -0.3633 0.4512 0.9233 27 1 2.9854 1.4773 -0.1193 28 1 1.6236 1.8714 0.9591 29 1 0.8041 1.5151 -1.8759 30 1 1.9900 2.7965 -1.6610 31 1 0.3802 4.1570 -0.9270 32 1 0.1518 3.1060 0.4865 33 1 -1.8824 2.7241 1.1373 34 1 -3.1856 3.5103 0.2168 35 1 -2.8865 0.6145 -0.3430 36 1 -4.3508 1.5718 -0.0314 37 1 -2.5590 -1.1703 0.8026 38 1 -3.7214 -1.6395 2.0648 39 1 -2.1275 -1.5960 3.7526 40 1 -1.1219 -0.3869 2.9218 41 1 -0.9545 -2.4533 1.1398 42 1 -1.1704 -3.3626 2.6488 43 1 -1.1355 -4.2106 5.2015 44 1 1.1309 -2.3463 0.5584 45 1 2.4449 -2.5183 1.7327 46 1 2.9341 -0.3254 1.5040 47 1 1.3043 0.1023 2.0952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068604424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:35 Heat of formation + Delta-G solvation = 35.228685 kcal Electronic energy + Delta-G solvation = -24714.046288 eV Core-core repulsion = 21571.425109 eV Total energy + Delta-G solvation = -3142.621178 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.09705 -35.93658 -33.32045 -33.04050 -32.33902 -31.02024 -27.77170 -27.04209 -25.75232 -24.96046 -23.55047 -22.67003 -20.70575 -20.37951 -20.10100 -16.85015 -16.65618 -16.26985 -15.62872 -15.34644 -15.19556 -14.95136 -14.31373 -14.10366 -14.07280 -13.94144 -13.46302 -13.22550 -13.11057 -12.60894 -12.53248 -12.23454 -11.86066 -11.73000 -11.57881 -11.46718 -11.38807 -11.03799 -10.97747 -10.78235 -10.71645 -10.54605 -10.39867 -10.27501 -10.05299 -9.93560 -9.76920 -9.57778 -9.35025 -8.62705 -8.48938 -7.76865 -7.40105 -6.71399 -5.66201 -3.22014 1.31472 2.01219 2.43254 2.81419 3.37784 3.45291 3.46126 4.36186 4.50930 4.58185 4.64072 4.75652 4.82055 5.10916 5.22264 5.32046 5.40242 5.41309 5.43799 5.46480 5.49969 5.64493 5.68411 5.70766 5.82528 5.84333 5.95588 6.06726 6.08697 6.14615 6.26103 6.31530 6.45974 6.59163 6.66507 6.76544 6.86713 6.93459 7.07366 7.17567 7.37417 7.77361 7.88780 8.42043 9.19798 9.84996 10.38342 11.27300 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.005309 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.154665 B = 5272.324214 C = 6471.448060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.471 5.471 3 C 0.017 3.983 4 C -0.109 4.109 5 C -0.087 4.087 6 S -0.258 6.258 7 C -0.075 4.075 8 C -0.080 4.080 9 S -0.272 6.272 10 C -0.074 4.074 11 C -0.107 4.107 12 C 0.148 3.852 13 N -0.590 5.590 14 C -0.244 4.244 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.148 3.852 23 C 0.003 3.997 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.092 0.908 43 H 0.252 0.748 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.055 0.945 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 11.952 -11.081 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N -0.194 5.194 3 C -0.113 4.113 4 C -0.148 4.148 5 C -0.235 4.235 6 S -0.031 6.031 7 C -0.225 4.225 8 C -0.229 4.229 9 S -0.045 6.045 10 C -0.223 4.223 11 C -0.149 4.149 12 C 0.021 3.979 13 N -0.312 5.312 14 C -0.373 4.373 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.538 5.538 18 Si 0.723 3.277 19 H -0.216 1.216 20 H -0.219 1.219 21 H -0.206 1.206 22 C 0.021 3.979 23 C -0.128 4.128 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.515 11.798 -11.603 16.738 hybrid contribution 0.192 0.551 1.992 2.075 sum -2.323 12.350 -9.612 15.821 Atomic orbital electron populations 1.23989 0.89607 1.02627 1.01850 1.70158 1.09926 1.12012 1.27342 1.23063 1.00333 0.91269 0.96598 1.21592 0.96620 0.98050 0.98548 1.23855 0.93830 1.02428 1.03389 1.86764 1.07428 1.90948 1.17993 1.23807 1.00533 1.00200 0.97944 1.23627 1.03085 0.99146 0.97085 1.86833 1.90397 1.15359 1.11869 1.23870 1.03060 0.91650 1.03705 1.22175 0.94095 1.01106 0.97474 1.21362 0.83503 0.99171 0.93830 1.44549 1.02051 1.83245 1.01317 1.19038 1.09883 1.26005 0.82365 0.91671 1.24814 1.00621 0.96292 0.97605 1.69872 1.30200 1.21541 1.32164 0.86419 0.77855 0.77738 0.85663 1.21567 1.21900 1.20557 1.20929 0.93776 0.91605 0.91628 1.24019 0.99651 1.00246 0.88834 0.90010 0.91812 0.94199 0.90985 0.93739 0.89055 0.91487 0.89363 0.89420 0.88160 0.88958 0.88275 0.89085 0.90232 0.89911 0.92099 0.91436 0.95993 0.89026 0.93800 0.92664 0.94409 0.92596 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.47 8.08 61.93 0.50 0.03 16 2 N -0.47 -7.11 6.22 -235.53 -1.46 -8.57 16 3 C 0.02 0.21 5.12 -2.63 -0.01 0.20 16 4 C -0.11 -1.15 5.05 -27.17 -0.14 -1.28 16 5 C -0.09 -0.86 6.08 37.16 0.23 -0.64 16 6 S -0.26 -2.83 18.96 -107.50 -2.04 -4.86 16 7 C -0.07 -0.81 6.39 37.16 0.24 -0.57 16 8 C -0.08 -0.93 6.39 37.16 0.24 -0.69 16 9 S -0.27 -4.04 21.24 -107.50 -2.28 -6.32 16 10 C -0.07 -1.20 6.28 37.21 0.23 -0.97 16 11 C -0.11 -2.16 4.97 -26.66 -0.13 -2.29 16 12 C 0.15 3.22 5.23 -3.52 -0.02 3.20 16 13 N -0.59 -13.59 2.54 -171.69 -0.44 -14.03 16 14 C -0.24 -6.30 9.24 -14.94 -0.14 -6.44 16 15 H 0.07 1.70 7.92 -52.49 -0.42 1.29 16 16 C 0.01 0.15 4.65 -17.42 -0.08 0.06 16 17 N -0.89 -24.57 10.81 55.49 0.60 -23.97 16 18 Si 0.89 21.41 29.61 -169.99 -5.03 16.37 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.15 2.95 5.48 -3.70 -0.02 2.93 16 23 C 0.00 0.05 4.84 -2.06 -0.01 0.04 16 24 H 0.08 1.11 3.46 -51.61 -0.18 0.93 16 25 H 0.06 1.05 5.21 -51.93 -0.27 0.78 16 26 H 0.04 0.65 7.02 -51.93 -0.36 0.28 16 27 H 0.07 0.86 8.15 -51.87 -0.42 0.44 16 28 H 0.04 0.58 6.44 -52.15 -0.34 0.25 16 29 H 0.09 1.08 6.29 -52.22 -0.33 0.75 16 30 H 0.07 0.60 8.23 -51.32 -0.42 0.18 16 31 H 0.09 0.75 8.16 -51.83 -0.42 0.33 16 32 H 0.09 0.93 6.41 -51.94 -0.33 0.59 16 33 H 0.10 1.19 6.95 -51.98 -0.36 0.83 16 34 H 0.09 0.88 8.15 -51.88 -0.42 0.46 16 35 H 0.10 1.20 6.89 -51.99 -0.36 0.84 16 36 H 0.09 0.95 8.15 -51.88 -0.42 0.53 16 37 H 0.08 1.20 6.56 -51.96 -0.34 0.86 16 38 H 0.08 1.31 8.15 -51.85 -0.42 0.88 16 39 H 0.06 1.41 7.98 -51.83 -0.41 0.99 16 40 H 0.07 1.46 7.27 -51.96 -0.38 1.08 16 41 H 0.02 0.43 5.28 -52.07 -0.27 0.16 16 42 H 0.09 2.33 5.69 -51.79 -0.29 2.04 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.05 1.08 6.54 -52.16 -0.34 0.73 16 45 H 0.04 0.79 8.19 -51.55 -0.42 0.37 16 46 H 0.06 0.93 8.02 -52.16 -0.42 0.52 16 47 H 0.06 1.09 6.81 -52.38 -0.36 0.73 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -26.41 364.71 -12.13 -38.54 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.86 Total: 3.76 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.88 Total: -6.41 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -1.30 Total: -46.57 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 16 Polarization: -6.87 SS G_CDS: -4.32 Total: -11.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.41 -12.13 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068604424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.772 kcal (2) G-P(sol) polarization free energy of solvation -26.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds