Wall clock time and date at job start Fri Apr 10 2020 14:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.50226 * 1 3 3 C 1.49825 * 105.45184 * 2 1 4 4 C 1.52127 * 110.85114 * 306.50534 * 3 2 1 5 5 C 1.53003 * 110.38812 * 109.05671 * 4 3 2 6 6 S 1.81278 * 109.77820 * 242.51504 * 5 4 3 7 7 C 1.81567 * 103.19710 * 132.27136 * 6 5 4 8 8 C 1.53013 * 109.62978 * 227.34945 * 7 6 5 9 9 S 1.81402 * 109.64193 * 138.93770 * 8 7 6 10 10 C 1.81196 * 103.14734 * 231.09710 * 9 8 7 11 11 C 1.53111 * 109.37529 * 127.62979 * 10 9 8 12 12 C 1.53019 * 109.91757 * 208.01480 * 11 10 9 13 13 N 1.47439 * 109.28098 * 145.41630 * 12 11 10 14 14 C 1.37200 * 121.06678 * 61.97221 * 13 12 11 15 15 H 1.07996 * 120.00078 * 203.63972 * 14 13 12 16 16 C 1.38816 * 120.00170 * 23.63458 * 14 13 12 17 17 N 1.31629 * 119.99674 * 21.48834 * 16 14 13 18 18 Si 1.86799 * 120.00191 * 201.48871 * 16 14 13 19 19 H 1.48500 * 109.46937 * 90.00138 * 18 16 14 20 20 H 1.48500 * 109.46874 * 209.99791 * 18 16 14 21 21 H 1.48498 * 109.47076 * 330.00058 * 18 16 14 22 22 C 1.47566 * 117.93392 * 241.75299 * 13 12 11 23 23 C 1.50450 * 104.02134 * 109.23158 * 2 1 3 24 24 H 1.08997 * 109.47279 * 56.04377 * 1 2 3 25 25 H 1.09002 * 109.46902 * 176.04761 * 1 2 3 26 26 H 1.09001 * 109.47010 * 296.04504 * 1 2 3 27 27 H 1.09102 * 107.10146 * 186.57021 * 3 2 1 28 28 H 1.08608 * 108.12427 * 68.30274 * 3 2 1 29 29 H 1.08480 * 112.01652 * 345.57083 * 4 3 2 30 30 H 1.10075 * 108.62742 * 227.34687 * 4 3 2 31 31 H 1.09157 * 109.24649 * 122.57590 * 5 4 3 32 32 H 1.08975 * 109.73967 * 3.09070 * 5 4 3 33 33 H 1.08898 * 109.58073 * 347.69339 * 7 6 5 34 34 H 1.09080 * 109.36323 * 107.57352 * 7 6 5 35 35 H 1.08880 * 109.72906 * 18.66941 * 8 7 6 36 36 H 1.09078 * 109.29956 * 258.91338 * 8 7 6 37 37 H 1.08927 * 109.49418 * 7.40199 * 10 9 8 38 38 H 1.09127 * 109.49598 * 247.53242 * 10 9 8 39 39 H 1.09174 * 109.14664 * 88.12343 * 11 10 9 40 40 H 1.08946 * 109.41741 * 328.61726 * 11 10 9 41 41 H 1.08749 * 110.04150 * 24.36833 * 12 11 10 42 42 H 1.09254 * 109.16872 * 264.76365 * 12 11 10 43 43 H 0.97002 * 119.99594 * 180.02562 * 17 16 14 44 44 H 1.08591 * 110.35238 * 341.28318 * 22 13 12 45 45 H 1.09667 * 108.63899 * 222.52663 * 22 13 12 46 46 H 1.08594 * 107.36757 * 190.46100 * 23 2 1 47 47 H 1.08188 * 107.99360 * 310.13421 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.5023 0.0000 0.0000 3 6 1.9014 1.4441 0.0000 4 6 1.2305 2.1913 -1.1427 5 6 0.1574 3.1388 -0.6027 6 16 -1.4689 2.6482 -1.2357 7 6 -2.5112 2.6536 0.2510 8 6 -3.3345 1.3650 0.3063 9 16 -3.3788 0.7424 2.0096 10 6 -2.8774 -0.9894 1.8285 11 6 -1.7215 -1.2866 2.7876 12 6 -0.8499 -2.4096 2.2214 13 7 0.5575 -2.1643 2.5856 14 6 0.9530 -2.1277 3.8988 15 1 1.8479 -1.5918 4.1786 16 6 0.2029 -2.7796 4.8680 17 7 -0.6111 -3.7553 4.5243 18 14 0.3485 -2.2722 6.6599 19 1 -0.6478 -1.2118 6.9565 20 1 0.0933 -3.4484 7.5297 21 1 1.7157 -1.7531 6.9178 22 6 1.5294 -1.9639 1.4934 23 6 1.8668 -0.4808 1.3782 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 -0.3633 0.4512 0.9233 27 1 2.9854 1.4773 -0.1193 28 1 1.6236 1.8714 0.9591 29 1 0.8041 1.5151 -1.8759 30 1 1.9900 2.7965 -1.6610 31 1 0.3802 4.1570 -0.9270 32 1 0.1518 3.1060 0.4865 33 1 -1.8824 2.7241 1.1373 34 1 -3.1856 3.5103 0.2168 35 1 -2.8865 0.6145 -0.3430 36 1 -4.3508 1.5718 -0.0314 37 1 -2.5590 -1.1703 0.8026 38 1 -3.7214 -1.6395 2.0648 39 1 -2.1275 -1.5960 3.7526 40 1 -1.1219 -0.3869 2.9218 41 1 -0.9545 -2.4533 1.1398 42 1 -1.1704 -3.3626 2.6488 43 1 -1.1355 -4.2106 5.2015 44 1 1.1309 -2.3463 0.5584 45 1 2.4449 -2.5183 1.7327 46 1 2.9341 -0.3254 1.5040 47 1 1.3043 0.1023 2.0952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068604424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:34 Heat of formation + Delta-G solvation = 21.216525 kcal Electronic energy + Delta-G solvation = -24714.653901 eV Core-core repulsion = 21571.425109 eV Total energy + Delta-G solvation = -3143.228791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.40450 -37.55130 -34.54286 -34.10783 -33.87848 -32.70858 -29.27528 -28.17247 -27.49801 -26.27250 -24.61368 -24.11340 -21.98493 -21.77786 -21.71601 -18.58792 -17.71688 -17.42561 -17.05558 -16.73845 -16.35874 -16.09521 -15.81856 -15.41071 -15.37661 -15.25264 -15.02141 -14.55684 -14.21409 -13.93557 -13.67254 -13.65408 -13.26362 -13.05111 -12.91921 -12.84469 -12.77255 -12.68600 -12.39073 -12.34074 -12.13926 -11.94283 -11.78926 -11.67248 -11.52746 -11.43255 -11.10972 -10.97139 -10.83961 -10.60945 -9.76211 -8.82015 -8.64430 -8.44651 -7.66821 -5.25570 0.36562 0.98761 1.43451 1.47651 1.52497 1.56604 1.66146 2.52014 3.18726 3.34465 3.66819 3.69847 3.79302 3.89684 3.94216 4.02076 4.17785 4.23778 4.30181 4.37462 4.41961 4.56208 4.58895 4.61902 4.65675 4.67407 4.74374 4.78707 4.80023 4.85086 4.90336 5.03850 5.09008 5.12963 5.14111 5.22494 5.29439 5.40333 5.56184 5.74193 5.79380 5.88623 5.99775 6.43825 7.20976 7.92117 8.41487 9.21956 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.005309 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.154665 B = 5272.324214 C = 6471.448060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.473 5.473 3 C 0.019 3.981 4 C -0.104 4.104 5 C -0.083 4.083 6 S -0.266 6.266 7 C -0.071 4.071 8 C -0.066 4.066 9 S -0.292 6.292 10 C -0.066 4.066 11 C -0.084 4.084 12 C 0.156 3.844 13 N -0.601 5.601 14 C -0.243 4.243 15 H 0.060 0.940 16 C -0.037 4.037 17 N -0.916 5.916 18 Si 0.941 3.059 19 H -0.294 1.294 20 H -0.297 1.297 21 H -0.272 1.272 22 C 0.150 3.850 23 C 0.019 3.981 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.024 0.976 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.060 0.940 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 14.078 -12.860 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 N -0.196 5.196 3 C -0.110 4.110 4 C -0.143 4.143 5 C -0.231 4.231 6 S -0.039 6.039 7 C -0.221 4.221 8 C -0.216 4.216 9 S -0.065 6.065 10 C -0.214 4.214 11 C -0.126 4.126 12 C 0.029 3.971 13 N -0.323 5.323 14 C -0.373 4.373 15 H 0.078 0.922 16 C -0.233 4.233 17 N -0.562 5.562 18 Si 0.771 3.229 19 H -0.221 1.221 20 H -0.224 1.224 21 H -0.197 1.197 22 C 0.024 3.976 23 C -0.112 4.112 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.344 13.944 -13.403 19.483 hybrid contribution 0.194 -0.058 2.446 2.455 sum -2.150 13.886 -10.957 17.819 Atomic orbital electron populations 1.23854 0.89451 1.01589 1.01746 1.70127 1.10023 1.14274 1.25207 1.23129 1.01169 0.89463 0.97274 1.21529 0.97291 0.98016 0.97492 1.23876 0.92902 1.03366 1.02963 1.86810 1.08174 1.91085 1.17845 1.23748 1.00602 1.00240 0.97519 1.23687 1.04523 0.99237 0.94159 1.86891 1.90089 1.14159 1.15312 1.23619 1.01509 0.93166 1.03142 1.21795 0.94756 0.99424 0.96593 1.21185 0.83222 0.98095 0.94580 1.44704 1.03146 1.83238 1.01234 1.19191 1.09428 1.24929 0.83793 0.92175 1.25327 1.01067 0.96693 1.00227 1.70024 1.31130 1.22577 1.32513 0.85646 0.77837 0.76892 0.82506 1.22142 1.22397 1.19688 1.20989 0.92513 0.93313 0.90780 1.23647 0.99761 0.97902 0.89897 0.88372 0.93482 0.95640 0.89999 0.94350 0.89955 0.89081 0.87305 0.90039 0.89239 0.87262 0.88421 0.87124 0.88913 0.89600 0.95742 0.93064 0.94117 0.92542 0.94464 0.92130 0.95644 0.91742 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.48 8.08 127.04 1.03 0.55 16 2 N -0.47 -13.53 6.22 -899.07 -5.59 -19.12 16 3 C 0.02 0.42 5.12 85.44 0.44 0.86 16 4 C -0.10 -1.87 5.05 30.31 0.15 -1.72 16 5 C -0.08 -1.40 6.08 71.98 0.44 -0.97 16 6 S -0.27 -5.08 18.96 -56.49 -1.07 -6.15 16 7 C -0.07 -1.37 6.39 71.99 0.46 -0.91 16 8 C -0.07 -1.40 6.39 71.99 0.46 -0.94 16 9 S -0.29 -8.39 21.24 -56.49 -1.20 -9.59 16 10 C -0.07 -2.11 6.28 72.02 0.45 -1.66 16 11 C -0.08 -3.48 4.97 30.64 0.15 -3.33 16 12 C 0.16 6.94 5.23 86.21 0.45 7.39 16 13 N -0.60 -28.23 2.54 -697.10 -1.77 -29.99 16 14 C -0.24 -12.83 9.24 83.99 0.78 -12.05 16 15 H 0.06 3.18 7.92 -2.91 -0.02 3.16 16 16 C -0.04 -1.99 4.65 84.86 0.39 -1.60 16 17 N -0.92 -52.01 10.81 21.65 0.23 -51.78 16 18 Si 0.94 44.85 29.61 68.60 2.03 46.88 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 C 0.15 6.00 5.48 86.02 0.47 6.47 16 23 C 0.02 0.63 4.84 85.45 0.41 1.05 16 24 H 0.10 2.45 3.46 -2.59 -0.01 2.44 16 25 H 0.05 1.49 5.21 -2.39 -0.01 1.47 16 26 H 0.02 0.80 7.02 -2.39 -0.02 0.78 16 27 H 0.08 1.72 8.15 -2.33 -0.02 1.70 16 28 H 0.04 0.94 6.44 -2.59 -0.02 0.92 16 29 H 0.08 1.69 6.29 -2.66 -0.02 1.67 16 30 H 0.09 1.26 8.23 -1.81 -0.01 1.25 16 31 H 0.11 1.45 8.16 -2.31 -0.02 1.43 16 32 H 0.08 1.53 6.41 -2.40 -0.02 1.51 16 33 H 0.09 1.96 6.95 -2.44 -0.02 1.95 16 34 H 0.11 1.76 8.15 -2.35 -0.02 1.74 16 35 H 0.10 2.13 6.89 -2.45 -0.02 2.11 16 36 H 0.11 1.96 8.15 -2.35 -0.02 1.94 16 37 H 0.09 2.70 6.56 -2.43 -0.02 2.68 16 38 H 0.09 2.70 8.15 -2.32 -0.02 2.68 16 39 H 0.02 1.16 7.98 -2.29 -0.02 1.14 16 40 H 0.05 2.26 7.27 -2.42 -0.02 2.24 16 41 H 0.04 1.62 5.28 -2.52 -0.01 1.61 16 42 H 0.06 2.99 5.69 -2.25 -0.01 2.98 16 43 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.06 2.34 6.54 -2.60 -0.02 2.32 16 45 H 0.03 1.06 8.19 -2.03 -0.02 1.05 16 46 H 0.06 2.09 8.02 -2.60 -0.02 2.06 16 47 H 0.04 1.40 6.81 -2.81 -0.02 1.38 16 Total: -1.00 -57.87 364.71 -0.34 -58.20 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.94 Total: 18.40 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 6.08 Total: -6.85 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -7.12 Total: -100.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -13.47 SS G_CDS: -2.27 Total: -15.74 kcal Total: -57.87 -0.34 -58.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068604424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.418 kcal (2) G-P(sol) polarization free energy of solvation -57.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds