Wall clock time and date at job start Fri Apr 10 2020 14:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40120 * 125.85126 * 2 1 4 4 C 1.30573 * 109.48778 * 180.02562 * 3 2 1 5 5 C 1.40394 * 108.31382 * 359.97438 * 4 3 2 6 6 C 1.35627 * 125.84696 * 180.02562 * 2 1 3 7 7 N 1.34283 * 135.14715 * 359.97438 * 6 2 1 8 8 N 1.28292 * 121.81099 * 179.97438 * 7 6 2 9 9 N 1.28268 * 124.64197 * 359.97438 * 8 7 6 10 10 C 1.46497 * 119.44704 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47526 * 285.01786 * 10 9 8 12 12 C 1.46906 * 111.00221 * 155.00313 * 11 10 9 13 13 C 1.50706 * 109.46812 * 284.08098 * 12 11 10 14 14 H 1.07997 * 119.99925 * 4.80391 * 13 12 11 15 15 C 1.37876 * 119.99479 * 184.80480 * 13 12 11 16 16 N 1.31511 * 120.00317 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99499 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47196 * 90.00406 * 17 15 13 19 19 H 1.48509 * 109.46995 * 210.00112 * 17 15 13 20 20 H 1.48501 * 109.47293 * 330.00029 * 17 15 13 21 21 C 1.46899 * 111.00066 * 278.95564 * 11 10 9 22 22 C 1.53000 * 109.46865 * 163.78018 * 21 11 10 23 23 C 1.52998 * 117.50250 * 245.54855 * 22 21 11 24 24 C 1.53001 * 117.50047 * 176.88739 * 22 21 11 25 25 C 1.35424 * 121.10110 * 359.97438 * 9 8 7 26 26 O 1.21840 * 121.51025 * 180.02562 * 25 9 8 27 27 H 1.09006 * 109.46839 * 269.98068 * 1 2 3 28 28 H 1.09007 * 109.47089 * 29.97097 * 1 2 3 29 29 H 1.08996 * 109.47546 * 149.97490 * 1 2 3 30 30 H 1.07998 * 125.83849 * 180.26257 * 4 3 2 31 31 H 1.09003 * 109.47367 * 45.02092 * 10 9 8 32 32 H 1.09003 * 109.46750 * 165.01934 * 10 9 8 33 33 H 1.08996 * 109.46830 * 44.07519 * 12 11 10 34 34 H 1.08996 * 109.47167 * 164.08086 * 12 11 10 35 35 H 0.96996 * 120.00174 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.47345 * 283.78326 * 21 11 10 37 37 H 1.09002 * 109.47060 * 43.78554 * 21 11 10 38 38 H 1.08998 * 115.54938 * 31.22645 * 22 21 11 39 39 H 1.08999 * 117.49927 * 0.02562 * 23 22 21 40 40 H 1.08997 * 117.49605 * 145.02403 * 23 22 21 41 41 H 1.08998 * 117.50574 * 214.98562 * 24 22 21 42 42 H 1.09002 * 117.49296 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1357 0.0000 4 6 3.5385 0.7679 -0.0006 5 6 3.5863 -0.6353 -0.0003 6 6 2.2593 -1.0994 -0.0005 7 7 2.0491 -2.4257 -0.0007 8 7 3.0200 -3.2642 -0.0017 9 7 4.2616 -2.9422 -0.0030 10 6 5.2790 -3.9962 -0.0035 11 7 5.3623 -4.5971 1.3344 12 6 5.8800 -5.9701 1.2636 13 6 4.7971 -6.8899 0.7611 14 1 3.8475 -6.4841 0.4452 15 6 5.0189 -8.2496 0.7048 16 7 6.1755 -8.7437 1.0890 17 14 3.6764 -9.3898 0.0826 18 1 3.8114 -9.5580 -1.3866 19 1 3.8036 -10.7124 0.7460 20 1 2.3471 -8.8057 0.3941 21 6 6.1809 -3.7715 2.2323 22 6 5.9240 -4.1866 3.6823 23 6 5.2556 -3.1631 4.6024 24 6 6.7414 -3.4898 4.7720 25 6 4.6476 -1.6441 -0.0041 26 8 5.8247 -1.3298 -0.0059 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 4.3919 1.4298 0.0033 31 1 5.0081 -4.7625 -0.7298 32 1 6.2454 -3.5682 -0.2703 33 1 6.7299 -6.0032 0.5820 34 1 6.1973 -6.2904 2.2559 35 1 6.3314 -9.7002 1.0497 36 1 7.2353 -3.9127 1.9953 37 1 5.9167 -2.7220 2.1026 38 1 5.6759 -5.2371 3.8337 39 1 4.9984 -2.1942 4.1745 40 1 4.5679 -3.5403 5.3592 41 1 7.0305 -4.0817 5.6404 42 1 7.4618 -2.7354 4.4558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132571309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:42 Heat of formation + Delta-G solvation = 161.699449 kcal Electronic energy + Delta-G solvation = -27019.372931 eV Core-core repulsion = 23232.791522 eV Total energy + Delta-G solvation = -3786.581409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50189 -40.51828 -38.21434 -37.77482 -35.88652 -34.13818 -33.63320 -32.44703 -30.71920 -28.04901 -27.75545 -26.93990 -25.68416 -24.35204 -23.22818 -22.13377 -21.61453 -21.24588 -19.73860 -19.36767 -18.28906 -17.20324 -17.06087 -16.50216 -15.73611 -15.66550 -15.38016 -14.98021 -14.74472 -14.38247 -14.13899 -13.73406 -13.63118 -13.44258 -13.08626 -12.99486 -12.79738 -12.78706 -12.13532 -11.71508 -11.48272 -11.33580 -11.29277 -11.01126 -10.84007 -10.74837 -10.69551 -10.54932 -10.24155 -10.06830 -9.85041 -9.62198 -9.39172 -9.29767 -8.62516 -8.50207 -7.64800 -6.09078 -4.11428 0.20446 1.37846 1.72787 2.10061 2.14099 3.26563 3.30861 3.38009 3.43691 3.52528 3.87224 4.07045 4.22489 4.37929 4.56672 4.63310 4.90320 5.00121 5.05596 5.11305 5.18076 5.23355 5.26870 5.30076 5.41505 5.68640 5.74201 5.80224 5.85711 5.94779 5.95996 6.00603 6.11756 6.14490 6.35460 6.43695 6.68710 6.92893 7.08304 7.09862 7.47118 7.68765 7.81009 7.99186 8.32667 8.61639 8.97399 9.54119 11.01086 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004379 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.542720 B = 6391.966354 C = 7689.754643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.343 5.343 3 N -0.265 5.265 4 C 0.131 3.869 5 C -0.325 4.325 6 C 0.276 3.724 7 N -0.272 5.272 8 N 0.155 4.845 9 N -0.359 5.359 10 C 0.272 3.728 11 N -0.538 5.538 12 C 0.197 3.803 13 C -0.513 4.513 14 H 0.070 0.930 15 C 0.059 3.941 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.270 1.270 21 C 0.083 3.917 22 C -0.131 4.131 23 C -0.180 4.180 24 C -0.185 4.185 25 C 0.540 3.460 26 O -0.504 6.504 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.202 0.798 31 H 0.129 0.871 32 H 0.088 0.912 33 H -0.003 1.003 34 H 0.047 0.953 35 H 0.262 0.738 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 15.907 -0.469 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.129 5.129 3 N -0.085 5.085 4 C -0.059 4.059 5 C -0.347 4.347 6 C 0.037 3.963 7 N -0.162 5.162 8 N 0.164 4.836 9 N -0.193 5.193 10 C 0.062 3.938 11 N -0.264 5.264 12 C 0.074 3.926 13 C -0.551 4.551 14 H 0.088 0.912 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.195 1.195 21 C -0.045 4.045 22 C -0.149 4.149 23 C -0.217 4.217 24 C -0.222 4.222 25 C 0.333 3.667 26 O -0.375 6.375 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.219 0.781 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.015 0.985 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.709 15.966 -0.256 17.732 hybrid contribution 1.244 -0.256 -0.430 1.341 sum -6.464 15.711 -0.687 17.002 Atomic orbital electron populations 1.22083 0.72421 1.05270 1.04267 1.48312 1.07027 1.00544 1.56971 1.77350 1.01506 1.05654 1.24017 1.23482 0.95071 0.92313 0.95032 1.21188 0.92410 0.95870 1.25271 1.20567 0.89879 0.89576 0.96272 1.73843 1.20628 0.97694 1.24024 1.76712 0.87440 1.23119 0.96292 1.49163 1.06283 1.09245 1.54606 1.22648 0.87811 0.87829 0.95489 1.61754 1.52846 1.05138 1.06616 1.19840 0.94627 0.79935 0.98243 1.21194 1.00386 0.90862 1.42681 0.91170 1.24957 0.95660 0.98206 0.95442 1.69945 1.22886 1.13133 1.47684 0.86507 0.82379 0.79913 0.78747 1.20709 1.21391 1.19483 1.21698 0.95409 0.96102 0.91274 1.22299 1.02995 0.98907 0.90731 1.22916 0.95147 1.00157 1.03495 1.22937 0.94084 1.03899 1.01303 1.18349 0.89237 0.81699 0.77422 1.90889 1.17638 1.80162 1.48783 0.89973 0.88668 0.88313 0.78121 0.85290 0.89440 0.98476 0.93496 0.92821 0.94246 0.92408 0.86394 0.89822 0.89192 0.88971 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.46 59.85 0.69 1.43 16 2 N -0.34 -4.17 4.03 -67.23 -0.27 -4.44 16 3 N -0.26 -3.29 12.48 30.69 0.38 -2.91 16 4 C 0.13 1.62 12.04 -17.28 -0.21 1.42 16 5 C -0.32 -4.90 6.45 -104.91 -0.68 -5.58 16 6 C 0.28 4.04 8.16 -156.02 -1.27 2.76 16 7 N -0.27 -4.30 11.63 31.11 0.36 -3.94 16 8 N 0.15 2.69 12.10 60.35 0.73 3.42 16 9 N -0.36 -6.17 3.39 -64.52 -0.22 -6.38 16 10 C 0.27 4.89 5.38 -63.32 -0.34 4.55 16 11 N -0.54 -10.71 4.48 -239.98 -1.07 -11.78 16 12 C 0.20 4.64 4.49 -4.97 -0.02 4.61 16 13 C -0.51 -13.21 8.53 -34.44 -0.29 -13.50 16 14 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -25.13 13.29 55.43 0.74 -24.39 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.08 1.51 5.09 -3.82 -0.02 1.49 16 22 C -0.13 -2.25 5.58 -90.62 -0.51 -2.76 16 23 C -0.18 -2.71 10.18 -26.69 -0.27 -2.99 16 24 C -0.18 -2.64 10.25 -26.69 -0.27 -2.92 16 25 C 0.54 9.11 7.04 -12.67 -0.09 9.03 16 26 O -0.50 -9.17 16.06 5.06 0.08 -9.09 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.20 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.13 2.34 7.26 -51.93 -0.38 1.97 16 32 H 0.09 1.51 6.85 -51.93 -0.36 1.15 16 33 H 0.00 -0.06 8.00 -51.93 -0.42 -0.48 16 34 H 0.05 1.19 6.47 -51.93 -0.34 0.85 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.04 0.71 8.05 -51.93 -0.42 0.30 16 37 H 0.06 1.05 6.29 -51.93 -0.33 0.72 16 38 H 0.12 2.28 6.89 -51.93 -0.36 1.93 16 39 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -30.09 359.28 -7.77 -37.86 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.51 Total: 1.54 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.39 Total: -0.97 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.65 Total: -50.43 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.09 -7.77 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132571309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.563 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds