Wall clock time and date at job start Fri Apr 10 2020 14:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40120 * 125.85126 * 2 1 4 4 C 1.30573 * 109.48778 * 180.02562 * 3 2 1 5 5 C 1.40394 * 108.31382 * 359.97438 * 4 3 2 6 6 C 1.35627 * 125.84696 * 180.02562 * 2 1 3 7 7 N 1.34283 * 135.14715 * 359.97438 * 6 2 1 8 8 N 1.28292 * 121.81099 * 179.97438 * 7 6 2 9 9 N 1.28268 * 124.64197 * 359.97438 * 8 7 6 10 10 C 1.46497 * 119.44704 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47526 * 285.01786 * 10 9 8 12 12 C 1.46906 * 111.00221 * 155.00313 * 11 10 9 13 13 C 1.50706 * 109.46812 * 284.08098 * 12 11 10 14 14 H 1.07997 * 119.99925 * 4.80391 * 13 12 11 15 15 C 1.37876 * 119.99479 * 184.80480 * 13 12 11 16 16 N 1.31511 * 120.00317 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99499 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47196 * 90.00406 * 17 15 13 19 19 H 1.48509 * 109.46995 * 210.00112 * 17 15 13 20 20 H 1.48501 * 109.47293 * 330.00029 * 17 15 13 21 21 C 1.46899 * 111.00066 * 278.95564 * 11 10 9 22 22 C 1.53000 * 109.46865 * 163.78018 * 21 11 10 23 23 C 1.52998 * 117.50250 * 245.54855 * 22 21 11 24 24 C 1.53001 * 117.50047 * 176.88739 * 22 21 11 25 25 C 1.35424 * 121.10110 * 359.97438 * 9 8 7 26 26 O 1.21840 * 121.51025 * 180.02562 * 25 9 8 27 27 H 1.09006 * 109.46839 * 269.98068 * 1 2 3 28 28 H 1.09007 * 109.47089 * 29.97097 * 1 2 3 29 29 H 1.08996 * 109.47546 * 149.97490 * 1 2 3 30 30 H 1.07998 * 125.83849 * 180.26257 * 4 3 2 31 31 H 1.09003 * 109.47367 * 45.02092 * 10 9 8 32 32 H 1.09003 * 109.46750 * 165.01934 * 10 9 8 33 33 H 1.08996 * 109.46830 * 44.07519 * 12 11 10 34 34 H 1.08996 * 109.47167 * 164.08086 * 12 11 10 35 35 H 0.96996 * 120.00174 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.47345 * 283.78326 * 21 11 10 37 37 H 1.09002 * 109.47060 * 43.78554 * 21 11 10 38 38 H 1.08998 * 115.54938 * 31.22645 * 22 21 11 39 39 H 1.08999 * 117.49927 * 0.02562 * 23 22 21 40 40 H 1.08997 * 117.49605 * 145.02403 * 23 22 21 41 41 H 1.08998 * 117.50574 * 214.98562 * 24 22 21 42 42 H 1.09002 * 117.49296 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1357 0.0000 4 6 3.5385 0.7679 -0.0006 5 6 3.5863 -0.6353 -0.0003 6 6 2.2593 -1.0994 -0.0005 7 7 2.0491 -2.4257 -0.0007 8 7 3.0200 -3.2642 -0.0017 9 7 4.2616 -2.9422 -0.0030 10 6 5.2790 -3.9962 -0.0035 11 7 5.3623 -4.5971 1.3344 12 6 5.8800 -5.9701 1.2636 13 6 4.7971 -6.8899 0.7611 14 1 3.8475 -6.4841 0.4452 15 6 5.0189 -8.2496 0.7048 16 7 6.1755 -8.7437 1.0890 17 14 3.6764 -9.3898 0.0826 18 1 3.8114 -9.5580 -1.3866 19 1 3.8036 -10.7124 0.7460 20 1 2.3471 -8.8057 0.3941 21 6 6.1809 -3.7715 2.2323 22 6 5.9240 -4.1866 3.6823 23 6 5.2556 -3.1631 4.6024 24 6 6.7414 -3.4898 4.7720 25 6 4.6476 -1.6441 -0.0041 26 8 5.8247 -1.3298 -0.0059 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 4.3919 1.4298 0.0033 31 1 5.0081 -4.7625 -0.7298 32 1 6.2454 -3.5682 -0.2703 33 1 6.7299 -6.0032 0.5820 34 1 6.1973 -6.2904 2.2559 35 1 6.3314 -9.7002 1.0497 36 1 7.2353 -3.9127 1.9953 37 1 5.9167 -2.7220 2.1026 38 1 5.6759 -5.2371 3.8337 39 1 4.9984 -2.1942 4.1745 40 1 4.5679 -3.5403 5.3592 41 1 7.0305 -4.0817 5.6404 42 1 7.4618 -2.7354 4.4558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132571309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:42 Heat of formation + Delta-G solvation = 142.537092 kcal Electronic energy + Delta-G solvation = -27020.203873 eV Core-core repulsion = 23232.791522 eV Total energy + Delta-G solvation = -3787.412351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68931 -41.66858 -39.53488 -39.18145 -37.27065 -35.54648 -34.63514 -34.29145 -31.89640 -29.63361 -29.23143 -27.93943 -26.97252 -25.86178 -24.68419 -23.37736 -23.07205 -22.37158 -21.12343 -20.56940 -19.46776 -18.63166 -18.45877 -18.16918 -16.99016 -16.89017 -16.73823 -16.40407 -16.13250 -15.61676 -15.33629 -15.17005 -14.95226 -14.89450 -14.38273 -14.08556 -13.93590 -13.77118 -13.62464 -13.43830 -13.16465 -12.63220 -12.53205 -12.47384 -12.38763 -12.33275 -12.08803 -11.92453 -11.69921 -11.55380 -11.33892 -11.17051 -10.91906 -10.53715 -10.35253 -9.84371 -9.29108 -8.13692 -6.22020 -1.00754 0.15847 0.69669 0.89609 1.05310 1.47931 1.49634 1.61036 2.02661 2.34935 2.46156 2.76643 2.84438 3.09680 3.15346 3.22400 3.59692 3.77584 3.85119 3.97838 4.04607 4.13228 4.27139 4.33267 4.34017 4.37404 4.41511 4.57800 4.63293 4.66720 4.70075 4.72402 4.94873 5.02101 5.11701 5.19202 5.20406 5.31890 5.46052 5.72592 6.02073 6.04181 6.10190 6.23909 6.44047 6.92629 7.35018 7.47330 8.96551 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004379 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.542720 B = 6391.966354 C = 7689.754643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.331 5.331 3 N -0.259 5.259 4 C 0.134 3.866 5 C -0.335 4.335 6 C 0.258 3.742 7 N -0.258 5.258 8 N 0.129 4.871 9 N -0.363 5.363 10 C 0.279 3.721 11 N -0.543 5.543 12 C 0.215 3.785 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.011 3.989 16 N -0.931 5.931 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.092 3.908 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.163 4.163 25 C 0.536 3.464 26 O -0.525 6.525 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.122 0.878 32 H 0.093 0.907 33 H -0.020 1.020 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 17.775 -0.322 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.116 5.116 3 N -0.080 5.080 4 C -0.055 4.055 5 C -0.357 4.357 6 C 0.018 3.982 7 N -0.148 5.148 8 N 0.138 4.862 9 N -0.196 5.196 10 C 0.069 3.931 11 N -0.268 5.268 12 C 0.090 3.910 13 C -0.556 4.556 14 H 0.086 0.914 15 C -0.188 4.188 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.036 4.036 22 C -0.179 4.179 23 C -0.207 4.207 24 C -0.200 4.200 25 C 0.331 3.669 26 O -0.398 6.398 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.247 0.753 31 H 0.140 0.860 32 H 0.111 0.889 33 H -0.003 1.003 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.418 17.872 -0.115 20.202 hybrid contribution 1.631 -0.665 -0.472 1.824 sum -7.786 17.206 -0.588 18.895 Atomic orbital electron populations 1.22545 0.69738 1.07018 1.05902 1.48787 1.08453 0.99538 1.54834 1.77368 1.01568 1.05644 1.23422 1.23954 0.95919 0.91482 0.94167 1.21332 0.91978 0.96768 1.25651 1.20598 0.90542 0.89535 0.97553 1.73729 1.20207 0.98481 1.22424 1.76711 0.87550 1.23851 0.98078 1.48900 1.06073 1.09094 1.55506 1.22459 0.88433 0.87979 0.94231 1.61635 1.53098 1.04034 1.08050 1.19431 0.93505 0.81835 0.96209 1.21454 1.00630 0.91437 1.42093 0.91365 1.25725 0.97602 0.99748 0.95704 1.70059 1.24684 1.13406 1.49048 0.85529 0.79810 0.77781 0.78417 1.19902 1.21357 1.19023 1.21637 0.94766 0.95657 0.91549 1.22160 1.06610 0.98084 0.91053 1.22954 0.96035 0.99201 1.02520 1.23034 0.93887 1.03071 0.99998 1.18591 0.89456 0.81773 0.77106 1.90868 1.18408 1.80371 1.50163 0.88314 0.86223 0.87384 0.75260 0.86019 0.88946 1.00265 0.95726 0.92817 0.94749 0.92203 0.89142 0.89616 0.88216 0.87483 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.46 127.77 1.46 2.49 16 2 N -0.33 -7.18 4.03 -366.63 -1.48 -8.66 16 3 N -0.26 -5.71 12.48 -56.81 -0.71 -6.41 16 4 C 0.13 3.00 12.04 85.41 1.03 4.03 16 5 C -0.33 -9.65 6.45 -20.05 -0.13 -9.78 16 6 C 0.26 7.14 8.16 133.96 1.09 8.23 16 7 N -0.26 -7.95 11.63 -55.50 -0.65 -8.60 16 8 N 0.13 4.46 12.10 37.02 0.45 4.91 16 9 N -0.36 -12.59 3.39 -475.82 -1.61 -14.21 16 10 C 0.28 10.35 5.38 170.81 0.92 11.27 16 11 N -0.54 -22.34 4.48 -913.16 -4.09 -26.42 16 12 C 0.22 10.56 4.49 85.56 0.38 10.94 16 13 C -0.52 -27.32 8.53 25.60 0.22 -27.10 16 14 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -53.35 13.29 21.45 0.28 -53.07 16 17 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 C 0.09 3.40 5.09 86.30 0.44 3.84 16 22 C -0.16 -5.59 5.58 -10.79 -0.06 -5.65 16 23 C -0.17 -4.93 10.18 30.62 0.31 -4.62 16 24 C -0.16 -4.43 10.25 30.62 0.31 -4.12 16 25 C 0.54 17.98 7.04 86.27 0.61 18.59 16 26 O -0.52 -19.06 16.06 -4.80 -0.08 -19.14 16 27 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.23 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.12 4.62 7.26 -2.39 -0.02 4.60 16 32 H 0.09 3.30 6.85 -2.39 -0.02 3.28 16 33 H -0.02 -1.05 8.00 -2.39 -0.02 -1.07 16 34 H 0.02 1.32 6.47 -2.39 -0.02 1.30 16 35 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.03 1.29 8.05 -2.39 -0.02 1.27 16 37 H 0.06 2.18 6.29 -2.39 -0.02 2.17 16 38 H 0.09 3.67 6.89 -2.39 -0.02 3.65 16 39 H 0.09 2.45 8.04 -2.39 -0.02 2.43 16 40 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 42 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -65.03 359.28 2.25 -62.77 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.05 Total: 14.88 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 7.05 Total: 9.15 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -7.80 Total: -112.46 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.08 Total: -19.14 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -65.03 2.25 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132571309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.309 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds